Wall clock time and date at job start Mon Mar 30 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47067 * 2 1 4 4 C 1.50703 * 109.46866 * 240.00485 * 2 1 3 5 5 H 1.08001 * 119.99594 * 244.69886 * 4 2 1 6 6 C 1.37871 * 120.00086 * 64.69934 * 4 2 1 7 7 N 1.31520 * 120.00327 * 7.55661 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 187.56233 * 6 4 2 9 9 H 1.48505 * 109.46926 * 59.99904 * 8 6 4 10 10 H 1.48500 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47119 * 299.99805 * 8 6 4 12 12 N 1.46894 * 109.47334 * 120.00118 * 2 1 3 13 13 C 1.46900 * 111.00049 * 303.19796 * 12 2 1 14 14 C 1.46904 * 111.00011 * 179.24646 * 12 2 1 15 15 H 1.09005 * 110.01384 * 308.63006 * 14 12 2 16 16 C 1.53870 * 110.03232 * 70.01945 * 14 12 2 17 17 C 1.54262 * 106.59860 * 119.28600 * 16 14 12 18 18 C 1.54892 * 104.19627 * 23.61199 * 17 16 14 19 19 C 1.54259 * 110.03296 * 187.18915 * 14 12 2 20 20 H 1.09001 * 110.49054 * 335.78063 * 19 14 12 21 21 N 1.46903 * 110.48789 * 98.42857 * 19 14 12 22 22 H 1.09002 * 109.46746 * 186.12187 * 1 2 3 23 23 H 1.09003 * 109.46629 * 306.11696 * 1 2 3 24 24 H 1.08994 * 109.47532 * 66.11843 * 1 2 3 25 25 H 0.97002 * 119.99281 * 2.54979 * 7 6 4 26 26 H 1.09001 * 109.46923 * 60.00169 * 13 12 2 27 27 H 1.09005 * 109.46634 * 180.02562 * 13 12 2 28 28 H 1.08994 * 109.47031 * 299.99980 * 13 12 2 29 29 H 1.09003 * 110.03375 * 238.57100 * 16 14 12 30 30 H 1.08998 * 110.03143 * 359.95243 * 16 14 12 31 31 H 1.09008 * 110.48808 * 142.28838 * 17 16 14 32 32 H 1.08998 * 110.49147 * 264.79726 * 17 16 14 33 33 H 1.08999 * 110.75739 * 80.37052 * 18 17 16 34 34 H 1.09001 * 110.75537 * 203.55682 * 18 17 16 35 35 H 1.00906 * 111.00060 * 180.02562 * 21 19 14 36 36 H 1.00901 * 111.00008 * 303.94871 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5892 -1.6306 -1.1333 6 6 1.7810 -0.1854 -2.4804 7 7 1.2354 1.0057 -2.5959 8 14 2.2152 -1.1660 -4.0099 9 1 1.4688 -2.4499 -4.0032 10 1 1.8471 -0.3863 -5.2189 11 1 3.6744 -1.4418 -4.0234 12 7 2.0197 -0.6925 1.1994 13 6 1.4873 -0.0720 2.4198 14 6 3.4881 -0.7277 1.2243 15 1 3.8681 -1.1142 0.2786 16 6 4.0450 0.6840 1.4785 17 6 4.8517 0.6097 2.7913 18 6 5.2402 -0.8847 2.9143 19 6 3.9758 -1.6106 2.3914 20 1 3.2168 -1.6648 3.1718 21 7 4.3175 -2.9560 1.9104 22 1 -0.3633 -1.0218 0.1096 23 1 -0.3633 0.6058 0.8302 24 1 -0.3634 0.4160 -0.9396 25 1 1.0439 1.5303 -1.8028 26 1 0.3985 -0.1219 2.4075 27 1 1.8660 -0.6039 3.2927 28 1 1.8027 0.9703 2.4648 29 1 4.6960 0.9823 0.6567 30 1 3.2257 1.3954 1.5826 31 1 5.7444 1.2319 2.7263 32 1 4.2348 0.9164 3.6360 33 1 6.1030 -1.1123 2.2884 34 1 5.4384 -1.1480 3.9533 35 1 4.6373 -3.5405 2.6682 36 1 3.5355 -3.3789 1.4333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251594839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:50 Heat of formation + Delta-G solvation = -23.834234 kcal Electronic energy + Delta-G solvation = -15321.678658 eV Core-core repulsion = 13032.332203 eV Total energy + Delta-G solvation = -2289.346456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57618 -37.23714 -34.65246 -33.48562 -30.82342 -29.06038 -27.64579 -26.65137 -25.39369 -22.38785 -21.22764 -20.22437 -18.52795 -17.66875 -16.51889 -16.22104 -15.89773 -15.74203 -15.47995 -14.96520 -14.26043 -13.67487 -13.40996 -13.37414 -13.07552 -12.93505 -12.71028 -12.38511 -12.36956 -12.12668 -11.94814 -11.90424 -11.85273 -11.43637 -11.30919 -10.50322 -10.46488 -9.51027 -8.93971 -8.54991 -6.25200 1.53749 1.60959 1.80034 2.58298 3.19051 3.26233 3.59977 3.66812 3.98861 4.08691 4.35309 4.44943 4.54452 4.57272 4.60810 4.64566 4.71120 4.75912 4.81410 4.91556 4.96652 5.04790 5.09895 5.13435 5.27628 5.38452 5.41215 5.54087 5.97061 6.11181 6.34490 6.51755 6.56342 6.72621 6.79378 7.52004 8.81075 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.010534 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.335399 B = 2657.362965 C = 2952.821138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.204 3.796 3 H -0.040 1.040 4 C -0.585 4.585 5 H 0.047 0.953 6 C -0.029 4.029 7 N -0.937 5.937 8 Si 1.109 2.891 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.530 5.530 13 C 0.017 3.983 14 C 0.093 3.907 15 H 0.063 0.937 16 C -0.151 4.151 17 C -0.110 4.110 18 C -0.108 4.108 19 C 0.097 3.903 20 H 0.050 0.950 21 N -0.846 5.846 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.257 0.743 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.017 0.983 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.348 0.652 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -4.044 11.925 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.096 3.904 3 H -0.022 1.022 4 C -0.623 4.623 5 H 0.065 0.935 6 C -0.227 4.227 7 N -0.575 5.575 8 Si 0.932 3.068 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.253 5.253 13 C -0.131 4.131 14 C -0.017 4.017 15 H 0.082 0.918 16 C -0.191 4.191 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.015 4.015 20 H 0.067 0.933 21 N -0.377 5.377 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.161 0.839 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.544 -4.148 9.815 12.011 hybrid contribution -0.707 0.896 1.907 2.223 sum 4.836 -3.252 11.722 13.091 Atomic orbital electron populations 1.21755 0.97741 0.99858 0.99107 1.19145 0.91953 0.90486 0.88777 1.02225 1.22136 1.37554 1.10141 0.92474 0.93491 1.27028 0.94256 0.97038 1.04404 1.70918 1.42765 1.11078 1.32772 0.83023 0.76871 0.74501 0.72397 1.19759 1.21175 1.20126 1.62215 1.07802 1.53378 1.01943 1.22514 1.00303 0.96850 0.93394 1.22224 0.86957 0.93612 0.98860 0.91846 1.22661 0.99325 0.98478 0.98633 1.22250 0.99591 0.97132 0.95841 1.22491 0.96894 0.93844 1.01445 1.22228 0.95899 0.89195 0.94130 0.93250 1.58705 1.42130 1.04024 1.32822 0.93604 0.94166 0.94592 0.93325 0.91858 0.90199 0.96492 0.94109 0.93466 0.90613 0.90769 0.91309 0.89398 0.83860 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.34 71.98 0.60 -5.49 16 2 C 0.20 10.39 1.46 44.17 0.06 10.46 16 3 H -0.04 -2.24 6.37 -2.39 -0.02 -2.26 16 4 C -0.58 -33.04 7.63 25.60 0.20 -32.84 16 5 H 0.05 2.70 6.90 -2.91 -0.02 2.68 16 6 C -0.03 -1.68 5.18 84.65 0.44 -1.24 16 7 N -0.94 -57.36 12.86 21.45 0.28 -57.08 16 8 Si 1.11 51.51 29.91 68.60 2.05 53.56 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.53 -22.39 4.61 -871.96 -4.02 -26.42 16 13 C 0.02 0.61 8.43 127.69 1.08 1.68 16 14 C 0.09 3.65 2.45 45.63 0.11 3.76 16 15 H 0.06 3.04 6.22 -2.38 -0.01 3.02 16 16 C -0.15 -5.58 5.40 31.32 0.17 -5.41 16 17 C -0.11 -2.94 6.83 31.67 0.22 -2.72 16 18 C -0.11 -2.73 6.58 31.89 0.21 -2.52 16 19 C 0.10 2.92 3.48 45.99 0.16 3.08 16 20 H 0.05 1.43 5.89 -2.39 -0.01 1.41 16 21 N -0.85 -24.08 9.27 -164.23 -1.52 -25.60 16 22 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.04 1.69 6.72 -2.39 -0.02 1.67 16 24 H 0.04 1.89 6.27 -2.39 -0.01 1.87 16 25 H 0.26 15.90 6.16 -92.71 -0.57 15.33 16 26 H 0.06 2.16 6.39 -2.39 -0.02 2.14 16 27 H 0.08 2.34 6.01 -2.38 -0.01 2.32 16 28 H 0.02 0.59 6.13 -2.39 -0.01 0.58 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.87 5.12 -2.39 -0.01 1.86 16 31 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.35 7.62 9.08 -89.69 -0.81 6.80 16 36 H 0.34 10.55 9.02 -89.69 -0.81 9.74 16 Total: -1.00 -63.67 268.88 -0.32 -63.98 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.34 Total: 22.80 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.24 Total: -31.24 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -5.27 Total: -109.10 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Total: -63.67 -0.32 -63.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251594839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.149 kcal (2) G-P(sol) polarization free energy of solvation -63.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds