Wall clock time and date at job start Mon Mar 30 2020 02:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46812 * 2 1 4 4 C 1.50692 * 109.47142 * 120.00299 * 2 1 3 5 5 H 1.08001 * 120.00447 * 114.59262 * 4 2 1 6 6 C 1.37877 * 119.99825 * 294.59507 * 4 2 1 7 7 N 1.31519 * 120.00077 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00019 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46856 * 90.00084 * 8 6 4 10 10 H 1.48500 * 109.47355 * 209.99951 * 8 6 4 11 11 H 1.48499 * 109.47591 * 330.00291 * 8 6 4 12 12 N 1.46902 * 109.46932 * 240.00071 * 2 1 3 13 13 C 1.46847 * 111.00047 * 294.92685 * 12 2 1 14 14 C 1.53034 * 109.52435 * 174.16480 * 13 12 2 15 15 C 1.53125 * 109.28254 * 59.17345 * 14 13 12 16 16 H 1.08999 * 109.51746 * 62.25378 * 15 14 13 17 17 C 1.52992 * 109.52309 * 182.44448 * 15 14 13 18 18 C 1.53118 * 109.15746 * 302.34976 * 15 14 13 19 19 H 1.08994 * 109.50693 * 297.70775 * 18 15 14 20 20 N 1.46908 * 109.49945 * 177.59208 * 18 15 14 21 21 C 1.46842 * 110.99858 * 170.71481 * 12 2 1 22 22 H 1.08997 * 109.47138 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47016 * 300.00084 * 1 2 3 24 24 H 1.09005 * 109.46861 * 59.99702 * 1 2 3 25 25 H 0.97006 * 119.99450 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46235 * 294.17628 * 13 12 2 27 27 H 1.08996 * 109.46604 * 54.14540 * 13 12 2 28 28 H 1.09001 * 109.50790 * 179.11859 * 14 13 12 29 29 H 1.09002 * 109.50346 * 299.19630 * 14 13 12 30 30 H 1.09003 * 109.46744 * 179.68834 * 17 15 14 31 31 H 1.08997 * 109.47169 * 299.68295 * 17 15 14 32 32 H 1.08998 * 109.47550 * 59.68470 * 17 15 14 33 33 H 1.00900 * 110.99519 * 180.19942 * 20 18 15 34 34 H 1.00897 * 110.99718 * 304.14615 * 20 18 15 35 35 H 1.09002 * 109.46522 * 65.82094 * 21 12 2 36 36 H 1.09008 * 109.46385 * 305.85533 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5794 -1.6366 1.1337 6 6 1.7936 -0.1780 2.4796 7 7 1.1270 0.9496 2.5974 8 14 2.4156 -1.0590 4.0048 9 1 3.7811 -0.5760 4.3331 10 1 1.5047 -0.7799 5.1439 11 1 2.4559 -2.5214 3.7501 12 7 2.0197 -0.6925 -1.1995 13 6 1.6503 -2.1135 -1.1744 14 6 2.0471 -2.7686 -2.4993 15 6 3.5569 -2.6179 -2.7057 16 1 4.0872 -3.1373 -1.9075 17 6 3.9505 -3.2172 -4.0572 18 6 3.9217 -1.1311 -2.6794 19 1 3.4217 -0.6191 -3.5015 20 7 5.3764 -0.9806 -2.8191 21 6 3.4706 -0.5235 -1.3492 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.9588 1.3239 3.4763 26 1 2.1697 -2.6093 -0.3543 27 1 0.5738 -2.2066 -1.0313 28 1 1.7871 -3.8269 -2.4744 29 1 1.5171 -2.2829 -3.3185 30 1 5.0245 -3.1045 -4.2056 31 1 3.6904 -4.2755 -4.0750 32 1 3.4172 -2.6986 -4.8538 33 1 5.6425 -0.0075 -2.8014 34 1 5.8640 -1.5018 -2.1060 35 1 3.9816 -1.0267 -0.5283 36 1 3.7162 0.5384 -1.3331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251602678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:45 Heat of formation + Delta-G solvation = -13.229190 kcal Electronic energy + Delta-G solvation = -15160.519418 eV Core-core repulsion = 12871.632832 eV Total energy + Delta-G solvation = -2288.886586 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.85857 -35.35995 -32.77552 -32.22143 -29.39655 -28.21766 -25.66934 -25.11609 -22.13322 -21.87519 -19.66213 -19.18804 -16.26889 -15.50331 -15.24576 -14.39497 -14.25216 -13.99485 -13.53082 -13.18124 -12.77994 -12.50394 -11.77761 -11.65747 -11.59207 -11.39907 -11.02086 -10.86349 -10.66993 -10.48836 -10.27375 -10.15266 -10.08778 -9.71328 -9.64727 -9.17681 -8.42866 -8.31615 -7.13445 -6.02516 -4.14284 3.23579 3.31242 3.33881 4.37150 4.77147 5.06891 5.19023 5.24531 5.30054 5.55387 5.80523 5.89071 5.99423 6.05404 6.09365 6.18411 6.35489 6.45084 6.52975 6.59662 6.67576 6.72833 6.93065 6.94433 7.04963 7.18895 7.36591 7.54775 7.67710 7.70380 7.93013 8.14035 8.30846 8.44910 8.96439 9.53363 10.99203 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.009217 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.770253 B = 3037.056346 C = 3208.133779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.206 3.794 3 H 0.039 0.961 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.533 5.533 13 C 0.060 3.940 14 C -0.112 4.112 15 C -0.082 4.082 16 H 0.060 0.940 17 C -0.135 4.135 18 C 0.095 3.905 19 H 0.081 0.919 20 N -0.843 5.843 21 C 0.036 3.964 22 H 0.028 0.972 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.261 0.739 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.337 0.663 34 H 0.334 0.666 35 H 0.032 0.968 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -4.996 -8.365 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.099 3.901 3 H 0.057 0.943 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.258 5.258 13 C -0.069 4.069 14 C -0.151 4.151 15 C -0.101 4.101 16 H 0.078 0.922 17 C -0.192 4.192 18 C -0.017 4.017 19 H 0.099 0.901 20 N -0.370 5.370 21 C -0.094 4.094 22 H 0.047 0.953 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.050 0.950 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.642 -4.990 -9.360 11.215 hybrid contribution 0.649 -0.322 2.806 2.898 sum 4.291 -5.312 -6.554 9.465 Atomic orbital electron populations 1.21734 0.97926 0.98959 0.99759 1.19271 0.92169 0.94192 0.84434 0.94276 1.21712 1.35816 1.08664 0.91922 0.92631 1.24928 0.94912 0.94803 0.98872 1.69919 1.40039 1.18915 1.23664 0.86690 0.78713 0.80103 0.83062 1.20779 1.21108 1.20034 1.62394 1.10663 1.11046 1.41656 1.21931 1.00600 0.89605 0.94752 1.21700 0.94902 0.99453 0.99012 1.21131 0.96312 0.95144 0.97544 0.92175 1.21697 1.01779 0.99059 0.96658 1.21562 0.87219 0.95623 0.97247 0.90086 1.59117 1.06453 1.16035 1.55428 1.22670 0.90971 0.99788 0.96019 0.95339 0.90794 0.96460 0.92896 0.94627 0.91258 0.92489 0.91800 0.92037 0.93901 0.93254 0.85082 0.85387 0.94966 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.93 37.16 0.33 -2.71 16 2 C 0.21 5.15 2.22 -68.86 -0.15 5.00 16 3 H 0.04 1.09 8.00 -51.93 -0.42 0.67 16 4 C -0.54 -14.56 7.17 -34.44 -0.25 -14.81 16 5 H 0.06 1.51 5.85 -52.49 -0.31 1.20 16 6 C 0.07 1.85 5.33 -17.82 -0.09 1.75 16 7 N -0.89 -25.22 11.73 55.43 0.65 -24.57 16 8 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.53 -11.36 4.61 -228.08 -1.05 -12.42 16 13 C 0.06 1.17 4.79 -3.84 -0.02 1.15 16 14 C -0.11 -1.79 5.38 -26.65 -0.14 -1.93 16 15 C -0.08 -1.24 2.42 -90.50 -0.22 -1.46 16 16 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 17 C -0.13 -1.75 9.07 37.15 0.34 -1.41 16 18 C 0.10 1.49 2.83 -67.63 -0.19 1.30 16 19 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 20 N -0.84 -11.30 8.61 -4.59 -0.04 -11.34 16 21 C 0.04 0.70 4.75 -3.84 -0.02 0.68 16 22 H 0.03 0.65 6.41 -51.93 -0.33 0.32 16 23 H 0.07 1.95 6.51 -51.93 -0.34 1.61 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.04 0.77 6.32 -51.93 -0.33 0.44 16 27 H 0.07 1.40 6.18 -51.93 -0.32 1.08 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.79 7.68 -51.93 -0.40 0.40 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.34 4.16 9.04 -39.29 -0.36 3.81 16 34 H 0.33 4.31 8.98 -39.29 -0.35 3.95 16 35 H 0.03 0.68 7.36 -51.93 -0.38 0.30 16 36 H 0.06 1.17 8.02 -51.92 -0.42 0.75 16 LS Contribution 274.36 15.07 4.13 4.13 Total: -1.00 -27.53 274.36 -7.79 -35.32 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.04 Total: 5.10 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.42 Total: -12.42 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.44 Total: -48.32 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.53 -7.79 -35.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251602678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.090 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds