Wall clock time and date at job start Mon Mar 30 2020 02:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46812 * 2 1 4 4 C 1.50692 * 109.47142 * 120.00299 * 2 1 3 5 5 H 1.08001 * 120.00447 * 114.59262 * 4 2 1 6 6 C 1.37877 * 119.99825 * 294.59507 * 4 2 1 7 7 N 1.31519 * 120.00077 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00019 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46856 * 90.00084 * 8 6 4 10 10 H 1.48500 * 109.47355 * 209.99951 * 8 6 4 11 11 H 1.48499 * 109.47591 * 330.00291 * 8 6 4 12 12 N 1.46902 * 109.46932 * 240.00071 * 2 1 3 13 13 C 1.46847 * 111.00047 * 294.92685 * 12 2 1 14 14 C 1.53034 * 109.52435 * 174.16480 * 13 12 2 15 15 C 1.53125 * 109.28254 * 59.17345 * 14 13 12 16 16 H 1.08999 * 109.51746 * 62.25378 * 15 14 13 17 17 C 1.52992 * 109.52309 * 182.44448 * 15 14 13 18 18 C 1.53118 * 109.15746 * 302.34976 * 15 14 13 19 19 H 1.08994 * 109.50693 * 297.70775 * 18 15 14 20 20 N 1.46908 * 109.49945 * 177.59208 * 18 15 14 21 21 C 1.46842 * 110.99858 * 170.71481 * 12 2 1 22 22 H 1.08997 * 109.47138 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47016 * 300.00084 * 1 2 3 24 24 H 1.09005 * 109.46861 * 59.99702 * 1 2 3 25 25 H 0.97006 * 119.99450 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46235 * 294.17628 * 13 12 2 27 27 H 1.08996 * 109.46604 * 54.14540 * 13 12 2 28 28 H 1.09001 * 109.50790 * 179.11859 * 14 13 12 29 29 H 1.09002 * 109.50346 * 299.19630 * 14 13 12 30 30 H 1.09003 * 109.46744 * 179.68834 * 17 15 14 31 31 H 1.08997 * 109.47169 * 299.68295 * 17 15 14 32 32 H 1.08998 * 109.47550 * 59.68470 * 17 15 14 33 33 H 1.00900 * 110.99519 * 180.19942 * 20 18 15 34 34 H 1.00897 * 110.99718 * 304.14615 * 20 18 15 35 35 H 1.09002 * 109.46522 * 65.82094 * 21 12 2 36 36 H 1.09008 * 109.46385 * 305.85533 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5794 -1.6366 1.1337 6 6 1.7936 -0.1780 2.4796 7 7 1.1270 0.9496 2.5974 8 14 2.4156 -1.0590 4.0048 9 1 3.7811 -0.5760 4.3331 10 1 1.5047 -0.7799 5.1439 11 1 2.4559 -2.5214 3.7501 12 7 2.0197 -0.6925 -1.1995 13 6 1.6503 -2.1135 -1.1744 14 6 2.0471 -2.7686 -2.4993 15 6 3.5569 -2.6179 -2.7057 16 1 4.0872 -3.1373 -1.9075 17 6 3.9505 -3.2172 -4.0572 18 6 3.9217 -1.1311 -2.6794 19 1 3.4217 -0.6191 -3.5015 20 7 5.3764 -0.9806 -2.8191 21 6 3.4706 -0.5235 -1.3492 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.9588 1.3239 3.4763 26 1 2.1697 -2.6093 -0.3543 27 1 0.5738 -2.2066 -1.0313 28 1 1.7871 -3.8269 -2.4744 29 1 1.5171 -2.2829 -3.3185 30 1 5.0245 -3.1045 -4.2056 31 1 3.6904 -4.2755 -4.0750 32 1 3.4172 -2.6986 -4.8538 33 1 5.6425 -0.0075 -2.8014 34 1 5.8640 -1.5018 -2.1060 35 1 3.9816 -1.0267 -0.5283 36 1 3.7162 0.5384 -1.3331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251602678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:45 Heat of formation + Delta-G solvation = -32.640505 kcal Electronic energy + Delta-G solvation = -15161.361156 eV Core-core repulsion = 12871.632832 eV Total energy + Delta-G solvation = -2289.728324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36287 -37.00898 -34.45598 -33.75651 -31.18620 -29.60177 -27.25594 -27.06796 -23.69808 -23.27686 -21.34787 -20.72469 -18.26958 -17.13261 -16.65139 -16.09378 -15.83678 -15.36502 -15.20284 -14.67089 -14.49630 -13.87303 -13.41041 -13.15917 -13.06387 -13.02220 -12.82553 -12.55752 -12.37829 -12.24927 -11.98097 -11.91077 -11.52195 -11.29026 -11.18393 -11.02642 -10.54081 -9.57356 -8.96979 -8.10054 -6.31357 1.32898 1.35019 1.43991 2.35744 3.11122 3.32290 3.73305 3.86979 4.02503 4.23734 4.39830 4.54293 4.59340 4.72550 4.78313 4.90101 4.94261 4.99591 5.07116 5.11547 5.18101 5.18996 5.30519 5.33306 5.45175 5.53242 5.59996 5.66338 5.90833 6.15481 6.18304 6.35189 6.59432 6.67113 6.90051 7.39877 8.87982 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.009217 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.770253 B = 3037.056346 C = 3208.133779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.208 3.792 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.533 5.533 13 C 0.061 3.939 14 C -0.103 4.103 15 C -0.081 4.081 16 H 0.053 0.947 17 C -0.125 4.125 18 C 0.109 3.891 19 H 0.079 0.921 20 N -0.832 5.832 21 C 0.040 3.960 22 H 0.034 0.966 23 H 0.048 0.952 24 H 0.031 0.969 25 H 0.262 0.738 26 H 0.013 0.987 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.345 0.655 34 H 0.340 0.660 35 H 0.010 0.990 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -6.426 -9.380 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.196 1.196 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.142 4.142 15 C -0.100 4.100 16 H 0.071 0.929 17 C -0.183 4.183 18 C -0.004 4.004 19 H 0.097 0.903 20 N -0.360 5.360 21 C -0.091 4.091 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.029 0.971 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.338 -6.428 -10.392 12.966 hybrid contribution 0.451 0.154 3.105 3.141 sum 4.790 -6.274 -7.287 10.743 Atomic orbital electron populations 1.21562 0.97378 0.99110 0.99196 1.19076 0.92612 0.92600 0.85626 0.97855 1.21899 1.35559 1.08414 0.92872 0.93243 1.25663 0.95211 0.95516 1.01707 1.70036 1.40991 1.20092 1.24296 0.85718 0.78213 0.79055 0.79635 1.20359 1.20632 1.19615 1.62360 1.11975 1.12020 1.39334 1.21961 0.99839 0.88406 0.96470 1.21650 0.95601 1.00362 0.96547 1.21124 0.95557 0.94428 0.98874 0.92857 1.21606 1.01897 0.99816 0.94938 1.21403 0.88428 0.95998 0.94523 0.90253 1.59108 1.04877 1.16772 1.55277 1.22755 0.89507 0.99182 0.97642 0.94705 0.93268 0.95015 0.92837 0.96876 0.92052 0.90252 0.91131 0.91845 0.92398 0.92847 0.84247 0.84796 0.97134 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 8.93 71.98 0.64 -4.97 16 2 C 0.21 10.68 2.22 44.17 0.10 10.78 16 3 H 0.00 0.20 8.00 -2.39 -0.02 0.18 16 4 C -0.55 -29.97 7.17 25.60 0.18 -29.78 16 5 H 0.05 2.72 5.85 -2.91 -0.02 2.71 16 6 C 0.02 1.04 5.33 84.65 0.45 1.50 16 7 N -0.92 -52.97 11.73 21.45 0.25 -52.72 16 8 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.53 -22.80 4.61 -875.52 -4.04 -26.84 16 13 C 0.06 2.38 4.79 86.32 0.41 2.80 16 14 C -0.10 -3.05 5.38 30.65 0.16 -2.88 16 15 C -0.08 -2.24 2.42 -10.71 -0.03 -2.26 16 16 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 17 C -0.13 -2.81 9.07 71.98 0.65 -2.16 16 18 C 0.11 3.25 2.83 44.97 0.13 3.37 16 19 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 20 N -0.83 -20.72 8.61 -168.45 -1.45 -22.17 16 21 C 0.04 1.54 4.75 86.33 0.41 1.95 16 22 H 0.03 1.61 6.41 -2.39 -0.02 1.60 16 23 H 0.05 2.64 6.51 -2.39 -0.02 2.63 16 24 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 26 H 0.01 0.56 6.32 -2.39 -0.02 0.55 16 27 H 0.06 2.44 6.18 -2.39 -0.01 2.43 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.42 7.68 -2.39 -0.02 1.40 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.34 7.92 9.04 -89.69 -0.81 7.11 16 34 H 0.34 8.13 8.98 -89.70 -0.81 7.32 16 35 H 0.01 0.45 7.36 -2.39 -0.02 0.43 16 36 H 0.05 1.88 8.02 -2.38 -0.02 1.86 16 Total: -1.00 -58.82 274.36 -0.64 -59.47 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.55 Total: 18.12 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 3.12 Total: -21.66 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -5.23 Total: -101.72 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.82 -0.64 -59.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251602678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.827 kcal (2) G-P(sol) polarization free energy of solvation -58.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds