Wall clock time and date at job start Mon Mar 30 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46847 * 111.00253 * 176.04421 * 12 2 1 14 14 C 1.53029 * 109.52803 * 174.16454 * 13 12 2 15 15 C 1.53120 * 109.27994 * 59.17942 * 14 13 12 16 16 H 1.09001 * 109.51768 * 62.25028 * 15 14 13 17 17 C 1.52994 * 109.52625 * 182.44424 * 15 14 13 18 18 C 1.53123 * 109.16206 * 302.34909 * 15 14 13 19 19 H 1.08998 * 109.50396 * 297.71477 * 18 15 14 20 20 N 1.46894 * 109.50311 * 177.63039 * 18 15 14 21 21 C 1.46852 * 110.99599 * 51.84149 * 12 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46485 * 294.18739 * 13 12 2 27 27 H 1.09008 * 109.45747 * 54.15754 * 13 12 2 28 28 H 1.08993 * 109.50696 * 179.12701 * 14 13 12 29 29 H 1.09009 * 109.49958 * 299.20343 * 14 13 12 30 30 H 1.09001 * 109.47405 * 59.99835 * 17 15 14 31 31 H 1.09004 * 109.47484 * 180.02562 * 17 15 14 32 32 H 1.09001 * 109.47296 * 300.00111 * 17 15 14 33 33 H 1.00903 * 111.00147 * 180.02562 * 20 18 15 34 34 H 1.00900 * 111.00347 * 303.95555 * 20 18 15 35 35 H 1.08998 * 109.46100 * 305.85089 * 21 12 2 36 36 H 1.08996 * 109.46613 * 65.82182 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 3.4845 -0.7945 1.1872 14 6 3.9671 -1.3878 2.5126 15 6 3.3420 -2.7724 2.7042 16 1 3.6730 -3.4351 1.9046 17 6 3.7725 -3.3452 4.0560 18 6 1.8166 -2.6450 2.6648 19 1 1.4828 -2.0133 3.4880 20 7 1.2099 -3.9768 2.7911 21 6 1.3964 -2.0152 1.3347 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 3.7968 -1.4391 0.3656 27 1 3.9165 0.1975 1.0547 28 1 5.0532 -1.4778 2.4971 29 1 3.6677 -0.7360 3.3335 30 1 3.4383 -2.6826 4.8544 31 1 3.3274 -4.3310 4.1913 32 1 4.8588 -3.4303 4.0853 33 1 0.2028 -3.9190 2.7674 34 1 1.5529 -4.5998 2.0755 35 1 0.3118 -1.9099 1.3094 36 1 1.7184 -2.6542 0.5126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251602681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:47 Heat of formation + Delta-G solvation = -30.081391 kcal Electronic energy + Delta-G solvation = -15199.097108 eV Core-core repulsion = 12909.479755 eV Total energy + Delta-G solvation = -2289.617353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39552 -36.99184 -34.50008 -33.83878 -31.17403 -29.23810 -27.72008 -27.02653 -23.75680 -22.96200 -21.42535 -20.72457 -18.31420 -17.21252 -16.63571 -16.18676 -15.67712 -15.43679 -15.20235 -14.71519 -14.24706 -13.91042 -13.53797 -13.34345 -13.11256 -12.91703 -12.84061 -12.56521 -12.24001 -12.17465 -11.98349 -11.94692 -11.51453 -11.33244 -11.21828 -10.95272 -10.53709 -9.56410 -8.97481 -8.08266 -6.31527 1.32179 1.35006 1.44621 2.35506 3.10333 3.33373 3.73697 3.88404 4.02482 4.24753 4.39676 4.54954 4.59378 4.71902 4.79642 4.90486 4.92183 5.01296 5.04149 5.11002 5.14736 5.18464 5.28486 5.33079 5.47894 5.51813 5.60817 5.65768 5.93537 6.15018 6.22157 6.34639 6.60617 6.67554 6.89405 7.39816 8.87516 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.009160 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.149951 B = 3056.012152 C = 3162.449388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.207 3.793 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.949 3.051 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.534 5.534 13 C 0.063 3.937 14 C -0.102 4.102 15 C -0.081 4.081 16 H 0.052 0.948 17 C -0.125 4.125 18 C 0.107 3.893 19 H 0.079 0.921 20 N -0.832 5.832 21 C 0.036 3.964 22 H 0.032 0.968 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.263 0.737 26 H 0.014 0.986 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.345 0.655 34 H 0.339 0.661 35 H 0.062 0.938 36 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -7.422 9.297 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.100 3.900 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.258 5.258 13 C -0.065 4.065 14 C -0.140 4.140 15 C -0.100 4.100 16 H 0.071 0.929 17 C -0.182 4.182 18 C -0.006 4.006 19 H 0.097 0.903 20 N -0.360 5.360 21 C -0.094 4.094 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.281 -7.056 10.311 12.918 hybrid contribution -0.073 -0.251 -3.095 3.106 sum 3.208 -7.308 7.217 10.760 Atomic orbital electron populations 1.21687 0.97427 0.99058 0.99797 1.19087 0.92529 0.92750 0.85646 0.97761 1.21908 1.31466 1.12539 0.92713 0.93437 1.25648 0.95144 0.95597 1.01669 1.70002 1.37326 1.23884 1.24023 0.85655 0.78222 0.78673 0.79970 1.19775 1.20463 1.20499 1.62380 1.05801 1.18201 1.39392 1.21896 0.88660 0.99269 0.96683 1.21631 1.00031 0.95982 0.96364 1.21126 0.93846 0.96180 0.98863 0.92912 1.21605 1.00495 1.01204 0.94933 1.21420 0.94689 0.89618 0.94834 0.90293 1.59105 1.11990 1.09702 1.55218 1.22850 0.99018 0.90291 0.97265 0.94935 0.92195 0.95227 0.92810 0.96754 0.92983 0.90275 0.91146 0.92849 0.91811 0.92455 0.84214 0.84839 0.92014 0.97394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.47 71.98 0.61 -5.37 16 2 C 0.21 10.65 2.49 44.17 0.11 10.76 16 3 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 4 C -0.55 -29.95 7.21 25.60 0.18 -29.76 16 5 H 0.05 2.63 5.84 -2.91 -0.02 2.62 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -52.51 11.32 21.45 0.24 -52.27 16 8 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 N -0.53 -22.92 4.71 -875.50 -4.12 -27.05 16 13 C 0.06 2.51 4.97 86.32 0.43 2.94 16 14 C -0.10 -3.04 5.38 30.64 0.16 -2.87 16 15 C -0.08 -2.26 2.42 -10.71 -0.03 -2.28 16 16 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 17 C -0.13 -2.83 9.06 71.98 0.65 -2.17 16 18 C 0.11 3.17 2.83 44.97 0.13 3.30 16 19 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 20 N -0.83 -20.53 8.61 -168.46 -1.45 -21.98 16 21 C 0.04 1.38 4.31 86.33 0.37 1.75 16 22 H 0.03 1.51 6.19 -2.39 -0.01 1.50 16 23 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 24 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.01 0.62 6.46 -2.39 -0.02 0.61 16 27 H 0.05 2.14 8.12 -2.38 -0.02 2.12 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.43 7.69 -2.38 -0.02 1.41 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.35 7.79 9.04 -89.69 -0.81 6.98 16 34 H 0.34 8.07 8.98 -89.69 -0.81 7.27 16 35 H 0.06 2.40 5.84 -2.39 -0.01 2.39 16 36 H 0.01 0.33 7.17 -2.39 -0.02 0.31 16 Total: -1.00 -58.63 272.80 -0.79 -59.41 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.55 Total: 18.32 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.07 Total: -22.22 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -5.33 Total: -101.30 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.63 -0.79 -59.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251602681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.333 kcal (2) G-P(sol) polarization free energy of solvation -58.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds