Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 C 1.53004 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.64305 * 56.69569 * 4 3 2 6 6 C 1.54594 * 110.72406 * 293.54330 * 4 3 2 7 7 C 1.53992 * 105.14030 * 219.68679 * 6 4 3 8 8 N 1.47896 * 107.05956 * 358.77734 * 7 6 4 9 9 C 1.46889 * 111.00419 * 145.84417 * 8 7 6 10 10 H 1.08997 * 109.47338 * 299.87436 * 9 8 7 11 11 C 1.53007 * 109.47534 * 179.87282 * 9 8 7 12 12 C 1.50698 * 109.47372 * 59.87132 * 9 8 7 13 13 H 1.08011 * 119.99760 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00590 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99814 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00105 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47250 * 90.00169 * 16 14 12 18 18 H 1.48503 * 109.47047 * 210.00071 * 16 14 12 19 19 H 1.48495 * 109.47522 * 330.00203 * 16 14 12 20 20 C 1.48536 * 105.82027 * 25.32628 * 8 7 6 21 21 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 22 22 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 23 23 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 24 24 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 25 25 H 1.09004 * 109.47031 * 299.99620 * 3 2 1 26 26 H 1.08995 * 109.47111 * 59.99900 * 3 2 1 27 27 H 1.09007 * 110.30553 * 338.60549 * 6 4 3 28 28 H 1.09002 * 110.30848 * 100.66582 * 6 4 3 29 29 H 1.09003 * 109.91272 * 118.12856 * 7 6 4 30 30 H 1.08991 * 109.91534 * 239.41917 * 7 6 4 31 31 H 1.08993 * 109.46843 * 59.99673 * 11 9 8 32 32 H 1.08994 * 109.47211 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.46592 * 299.99996 * 11 9 8 34 34 H 0.97002 * 120.00057 * 180.02562 * 15 14 12 35 35 H 1.09000 * 110.66812 * 202.36057 * 20 8 7 36 36 H 1.09002 * 110.66260 * 79.23428 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5250 1.3306 -0.0006 5 1 3.8938 0.7607 -0.8533 6 6 4.0570 0.7384 1.3246 7 6 5.2924 1.5874 1.6771 8 7 5.4610 2.5793 0.5932 9 6 5.9845 3.8478 1.1170 10 1 5.2892 4.2517 1.8528 11 6 6.1480 4.8454 -0.0316 12 6 7.3221 3.6084 1.7686 13 1 7.7416 2.6133 1.7909 14 6 8.0106 4.6595 2.3363 15 7 7.5001 5.8713 2.3087 16 14 9.6682 4.3625 3.1445 17 1 10.7467 4.5253 2.1366 18 1 9.8657 5.3418 4.2433 19 1 9.7102 2.9845 3.6961 20 6 4.1116 2.7646 0.0004 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8306 -0.5261 -0.7814 25 1 1.6460 1.8948 -0.8901 26 1 1.6460 1.8948 0.8899 27 1 3.3029 0.8245 2.1070 28 1 4.3400 -0.3050 1.1860 29 1 5.1331 2.0984 2.6267 30 1 6.1750 0.9509 1.7386 31 1 5.1806 5.0185 -0.5028 32 1 6.5361 5.7868 0.3573 33 1 6.8434 4.4414 -0.7673 34 1 7.9846 6.6108 2.7078 35 1 4.1877 3.1499 -1.0163 36 1 3.5071 3.4272 0.6198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251626432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -1.326857 kcal Electronic energy + Delta-G solvation = -14593.283456 eV Core-core repulsion = 12304.912994 eV Total energy + Delta-G solvation = -2288.370462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.57361 -35.96838 -33.61222 -31.30476 -29.27985 -27.60057 -25.90366 -24.84374 -22.92308 -21.26916 -19.71471 -19.30822 -16.18156 -15.88090 -15.40954 -15.00850 -14.35863 -14.18797 -13.40906 -13.12590 -12.92966 -12.51386 -12.16731 -11.86308 -11.56680 -11.48629 -11.11629 -10.88765 -10.60843 -10.45889 -10.35413 -10.17519 -10.03591 -9.84999 -9.69567 -8.84292 -8.48308 -8.38966 -7.19187 -5.97235 -4.01382 3.33740 3.39713 3.43647 4.18915 4.45284 4.90387 5.16263 5.19700 5.32650 5.34690 5.40110 5.51805 5.72351 5.74706 5.84477 5.86717 6.05161 6.24361 6.42689 6.46623 6.64214 6.79680 6.84686 6.88601 6.94865 7.10431 7.15559 7.30347 7.53670 7.70730 7.87848 8.21408 8.37806 8.61829 9.05530 9.63657 11.09744 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061799 B = 0.006552 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.976470 B = 4272.205932 C = 4533.915325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.067 3.933 4 C -0.090 4.090 5 H 0.075 0.925 6 C -0.113 4.113 7 C 0.049 3.951 8 N -0.513 5.513 9 C 0.204 3.796 10 H -0.001 1.001 11 C -0.131 4.131 12 C -0.500 4.500 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.043 3.957 21 H 0.063 0.937 22 H 0.018 0.982 23 H 0.064 0.936 24 H 0.340 0.660 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.006 0.994 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.380 -8.210 -4.168 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.062 4.062 4 C -0.110 4.110 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.079 4.079 8 N -0.237 5.237 9 C 0.097 3.903 10 H 0.016 0.984 11 C -0.189 4.189 12 C -0.539 4.539 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.086 4.086 21 H 0.082 0.918 22 H 0.037 0.963 23 H 0.083 0.917 24 H 0.157 0.843 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.025 0.975 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.903 -8.254 -3.789 13.437 hybrid contribution 0.135 0.598 0.143 0.630 sum -9.769 -7.656 -3.646 12.936 Atomic orbital electron populations 1.22178 0.88270 1.01507 1.00242 1.60388 1.07220 1.14797 1.49907 1.22041 0.95017 0.88879 1.00303 1.22083 0.92656 0.97358 0.98870 0.90679 1.22358 0.97245 0.99208 0.96293 1.22626 0.96458 0.94470 0.94363 1.64841 1.18723 1.11891 1.28285 1.19432 0.94809 0.84164 0.91868 0.98367 1.21785 0.97031 1.02289 0.97774 1.21135 1.03177 0.94696 1.34898 0.92061 1.24937 0.98002 0.95111 0.96265 1.69897 1.38475 0.99503 1.45584 0.86519 0.84140 0.77913 0.78965 1.20687 1.21367 1.19929 1.23109 0.91360 0.94279 0.99856 0.91848 0.96315 0.91686 0.84307 0.95402 0.91067 0.92114 0.91991 0.94070 0.91493 0.97544 0.89744 0.94759 0.93055 0.91258 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.07 0.64 0.91 16 2 N -0.69 -7.97 6.67 -121.13 -0.81 -8.78 16 3 C 0.07 0.87 5.01 -3.82 -0.02 0.85 16 4 C -0.09 -1.38 3.25 -88.76 -0.29 -1.66 16 5 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 6 C -0.11 -1.84 6.33 -25.38 -0.16 -2.00 16 7 C 0.05 1.00 5.69 -2.76 -0.02 0.99 16 8 N -0.51 -11.45 5.10 -223.90 -1.14 -12.59 16 9 C 0.20 5.31 1.74 -68.87 -0.12 5.19 16 10 H 0.00 -0.03 8.00 -51.93 -0.42 -0.45 16 11 C -0.13 -3.29 8.89 37.16 0.33 -2.96 16 12 C -0.50 -14.06 8.07 -34.44 -0.28 -14.34 16 13 H 0.06 1.73 7.25 -52.48 -0.38 1.35 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.90 -25.95 11.32 55.43 0.63 -25.33 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 C 0.04 0.80 4.97 -1.90 -0.01 0.79 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.34 3.50 8.81 -39.29 -0.35 3.15 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.91 7.71 -51.93 -0.40 0.51 16 30 H 0.07 1.39 7.90 -51.93 -0.41 0.98 16 31 H 0.01 0.13 7.00 -51.93 -0.36 -0.24 16 32 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 1.26 7.67 -51.93 -0.40 0.86 16 36 H 0.03 0.65 7.87 -51.93 -0.41 0.24 16 LS Contribution 283.37 15.07 4.27 4.27 Total: -1.00 -29.09 283.37 -8.44 -37.53 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.36 Total: -1.06 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.01 Total: -10.71 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -1.32 Total: -46.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.09 -8.44 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251626432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.208 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds