Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 C 1.53004 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.64305 * 56.69569 * 4 3 2 6 6 C 1.54594 * 110.72406 * 293.54330 * 4 3 2 7 7 C 1.53992 * 105.14030 * 219.68679 * 6 4 3 8 8 N 1.47896 * 107.05956 * 358.77734 * 7 6 4 9 9 C 1.46889 * 111.00419 * 145.84417 * 8 7 6 10 10 H 1.08997 * 109.47338 * 299.87436 * 9 8 7 11 11 C 1.53007 * 109.47534 * 179.87282 * 9 8 7 12 12 C 1.50698 * 109.47372 * 59.87132 * 9 8 7 13 13 H 1.08011 * 119.99760 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00590 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99814 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00105 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47250 * 90.00169 * 16 14 12 18 18 H 1.48503 * 109.47047 * 210.00071 * 16 14 12 19 19 H 1.48495 * 109.47522 * 330.00203 * 16 14 12 20 20 C 1.48536 * 105.82027 * 25.32628 * 8 7 6 21 21 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 22 22 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 23 23 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 24 24 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 25 25 H 1.09004 * 109.47031 * 299.99620 * 3 2 1 26 26 H 1.08995 * 109.47111 * 59.99900 * 3 2 1 27 27 H 1.09007 * 110.30553 * 338.60549 * 6 4 3 28 28 H 1.09002 * 110.30848 * 100.66582 * 6 4 3 29 29 H 1.09003 * 109.91272 * 118.12856 * 7 6 4 30 30 H 1.08991 * 109.91534 * 239.41917 * 7 6 4 31 31 H 1.08993 * 109.46843 * 59.99673 * 11 9 8 32 32 H 1.08994 * 109.47211 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.46592 * 299.99996 * 11 9 8 34 34 H 0.97002 * 120.00057 * 180.02562 * 15 14 12 35 35 H 1.09000 * 110.66812 * 202.36057 * 20 8 7 36 36 H 1.09002 * 110.66260 * 79.23428 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5250 1.3306 -0.0006 5 1 3.8938 0.7607 -0.8533 6 6 4.0570 0.7384 1.3246 7 6 5.2924 1.5874 1.6771 8 7 5.4610 2.5793 0.5932 9 6 5.9845 3.8478 1.1170 10 1 5.2892 4.2517 1.8528 11 6 6.1480 4.8454 -0.0316 12 6 7.3221 3.6084 1.7686 13 1 7.7416 2.6133 1.7909 14 6 8.0106 4.6595 2.3363 15 7 7.5001 5.8713 2.3087 16 14 9.6682 4.3625 3.1445 17 1 10.7467 4.5253 2.1366 18 1 9.8657 5.3418 4.2433 19 1 9.7102 2.9845 3.6961 20 6 4.1116 2.7646 0.0004 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8306 -0.5261 -0.7814 25 1 1.6460 1.8948 -0.8901 26 1 1.6460 1.8948 0.8899 27 1 3.3029 0.8245 2.1070 28 1 4.3400 -0.3050 1.1860 29 1 5.1331 2.0984 2.6267 30 1 6.1750 0.9509 1.7386 31 1 5.1806 5.0185 -0.5028 32 1 6.5361 5.7868 0.3573 33 1 6.8434 4.4414 -0.7673 34 1 7.9846 6.6108 2.7078 35 1 4.1877 3.1499 -1.0163 36 1 3.5071 3.4272 0.6198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251626432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -22.223309 kcal Electronic energy + Delta-G solvation = -14594.189595 eV Core-core repulsion = 12304.912994 eV Total energy + Delta-G solvation = -2289.276601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09721 -37.18052 -35.40898 -33.09911 -30.76978 -29.32025 -27.45745 -26.51853 -24.00865 -22.96504 -21.19507 -21.03285 -18.25294 -17.28651 -16.81194 -16.44022 -15.85286 -15.48972 -14.84160 -14.65864 -14.53201 -14.10695 -13.43940 -13.36053 -13.14507 -12.84795 -12.76859 -12.61558 -12.52355 -12.22288 -12.06542 -11.70325 -11.63761 -11.54229 -11.35051 -10.92159 -10.53455 -9.35046 -9.03087 -8.12600 -6.24759 1.41389 1.42104 1.52758 2.41812 3.15107 3.22609 3.45208 3.91781 4.01644 4.04952 4.42461 4.47390 4.53540 4.62483 4.71709 4.74695 4.79526 4.82862 4.94774 5.00056 5.03597 5.06212 5.14318 5.24645 5.27937 5.45434 5.47839 5.71182 5.76226 6.04421 6.22987 6.36149 6.51239 6.66221 6.89307 7.44721 8.93623 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061799 B = 0.006552 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.976470 B = 4272.205932 C = 4533.915325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.701 5.701 3 C 0.076 3.924 4 C -0.076 4.076 5 H 0.087 0.913 6 C -0.100 4.100 7 C 0.048 3.952 8 N -0.523 5.523 9 C 0.209 3.791 10 H -0.039 1.039 11 C -0.119 4.119 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.040 3.960 21 H 0.058 0.942 22 H 0.026 0.974 23 H 0.080 0.920 24 H 0.349 0.651 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.014 0.986 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 -9.608 -4.825 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.332 5.332 3 C -0.053 4.053 4 C -0.095 4.095 5 H 0.105 0.895 6 C -0.138 4.138 7 C -0.080 4.080 8 N -0.248 5.248 9 C 0.101 3.899 10 H -0.021 1.021 11 C -0.177 4.177 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.089 4.089 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.099 0.901 24 H 0.167 0.833 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.443 -9.670 -4.458 14.915 hybrid contribution 0.255 1.025 0.338 1.109 sum -10.189 -8.646 -4.120 13.983 Atomic orbital electron populations 1.22219 0.86914 1.02615 1.00400 1.60341 1.08536 1.13718 1.50610 1.21848 0.93042 0.90034 1.00399 1.21986 0.94316 0.94691 0.98549 0.89468 1.22261 0.95241 0.99303 0.97011 1.22633 0.98299 0.94291 0.92822 1.64751 1.21227 1.10301 1.28485 1.19228 0.93462 0.85938 0.91253 1.02119 1.21599 0.97982 1.00783 0.97315 1.21384 1.04248 0.94500 1.35686 0.92784 1.25738 1.01557 0.94827 0.96705 1.70021 1.39845 1.00198 1.46058 0.85500 0.79721 0.77969 0.78111 1.19969 1.20769 1.19406 1.23193 0.89542 0.96658 0.99484 0.92284 0.95535 0.90145 0.83320 0.94353 0.92026 0.91697 0.90149 0.96716 0.92230 0.95281 0.92178 0.95007 0.92889 0.90555 0.95769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.70 127.69 1.37 1.82 16 2 N -0.70 -14.05 6.67 -537.13 -3.58 -17.63 16 3 C 0.08 1.79 5.01 86.30 0.43 2.23 16 4 C -0.08 -2.16 3.25 -9.59 -0.03 -2.19 16 5 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 6 C -0.10 -3.10 6.33 31.47 0.20 -2.90 16 7 C 0.05 1.97 5.69 86.45 0.49 2.46 16 8 N -0.52 -23.47 5.10 -862.28 -4.40 -27.87 16 9 C 0.21 11.13 1.74 44.17 0.08 11.21 16 10 H -0.04 -2.30 8.00 -2.39 -0.02 -2.32 16 11 C -0.12 -6.04 8.89 71.98 0.64 -5.40 16 12 C -0.52 -29.78 8.07 25.60 0.21 -29.58 16 13 H 0.05 3.10 7.25 -2.90 -0.02 3.08 16 14 C 0.01 0.58 5.30 84.65 0.45 1.03 16 15 N -0.92 -54.34 11.32 21.45 0.24 -54.10 16 16 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.04 1.45 4.97 86.65 0.43 1.88 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.35 6.00 8.81 -89.69 -0.79 5.21 16 25 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 27 H 0.06 1.97 7.80 -2.38 -0.02 1.95 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.01 0.66 7.71 -2.39 -0.02 0.64 16 30 H 0.06 2.49 7.90 -2.39 -0.02 2.47 16 31 H 0.03 1.29 7.00 -2.39 -0.02 1.27 16 32 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 33 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.08 2.65 7.67 -2.39 -0.02 2.63 16 36 H 0.02 0.93 7.87 -2.39 -0.02 0.91 16 Total: -1.00 -62.50 283.37 -1.21 -63.71 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.24 Total: 8.58 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 4.26 Total: -19.45 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -7.74 Total: -99.60 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.50 -1.21 -63.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251626432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.487 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds