Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47136 * 2 1 4 4 C 1.50701 * 109.47615 * 239.99887 * 2 1 3 5 5 H 1.07997 * 119.99928 * 244.70802 * 4 2 1 6 6 C 1.37875 * 119.99884 * 64.69405 * 4 2 1 7 7 N 1.31510 * 120.00127 * 7.57513 * 6 4 2 8 8 Si 1.86805 * 120.00017 * 187.56673 * 6 4 2 9 9 H 1.48497 * 109.46691 * 90.00308 * 8 6 4 10 10 H 1.48502 * 109.47017 * 330.00488 * 8 6 4 11 11 H 1.48499 * 109.47179 * 210.00663 * 8 6 4 12 12 N 1.46902 * 109.47235 * 119.99690 * 2 1 3 13 13 C 1.46895 * 110.99969 * 303.20007 * 12 2 1 14 14 C 1.46900 * 111.00394 * 179.24253 * 12 2 1 15 15 H 1.08998 * 110.01930 * 308.63148 * 14 12 2 16 16 C 1.53882 * 110.02840 * 70.02268 * 14 12 2 17 17 C 1.54264 * 106.59952 * 119.28718 * 16 14 12 18 18 C 1.54888 * 104.19424 * 23.60590 * 17 16 14 19 19 H 1.09007 * 110.75260 * 80.56115 * 18 17 16 20 20 N 1.46899 * 110.75906 * 203.74220 * 18 17 16 21 21 C 1.54264 * 110.03649 * 187.18777 * 14 12 2 22 22 H 1.09002 * 109.46905 * 186.12183 * 1 2 3 23 23 H 1.08998 * 109.47336 * 306.12072 * 1 2 3 24 24 H 1.09003 * 109.47339 * 66.12702 * 1 2 3 25 25 H 0.97006 * 120.00021 * 2.52811 * 7 6 4 26 26 H 1.09003 * 109.47409 * 60.00192 * 13 12 2 27 27 H 1.09003 * 109.47086 * 179.97438 * 13 12 2 28 28 H 1.08995 * 109.47267 * 299.99555 * 13 12 2 29 29 H 1.09004 * 110.03110 * 238.57248 * 16 14 12 30 30 H 1.08997 * 110.03026 * 359.95104 * 16 14 12 31 31 H 1.08999 * 110.48524 * 142.28609 * 17 16 14 32 32 H 1.09004 * 110.48620 * 264.79802 * 17 16 14 33 33 H 1.00901 * 111.00102 * 298.55279 * 20 18 17 34 34 H 1.00905 * 110.99668 * 62.49918 * 20 18 17 35 35 H 1.09007 * 110.48391 * 335.78726 * 21 14 12 36 36 H 1.08997 * 110.48756 * 98.42763 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5891 -1.6307 -1.1331 6 6 1.7810 -0.1856 -2.4804 7 7 1.2356 1.0055 -2.5960 8 14 2.2154 -1.1664 -4.0098 9 1 1.0571 -2.0083 -4.4033 10 1 3.3850 -2.0358 -3.7246 11 1 2.5492 -0.2349 -5.1170 12 7 2.0196 -0.6924 1.1995 13 6 1.4871 -0.0719 2.4198 14 6 3.4880 -0.7278 1.2245 15 1 3.8680 -1.1144 0.2789 16 6 4.0449 0.6840 1.4787 17 6 4.8515 0.6097 2.7915 18 6 5.2399 -0.8846 2.9147 19 1 6.1048 -1.1115 2.2913 20 7 5.5026 -1.2405 4.3155 21 6 3.9756 -1.6106 2.3917 22 1 -0.3633 -1.0218 0.1096 23 1 -0.3634 0.6058 0.8301 24 1 -0.3634 0.4159 -0.9398 25 1 1.0439 1.5302 -1.8029 26 1 0.3983 -0.1218 2.4075 27 1 1.8650 -0.6042 3.2927 28 1 1.8026 0.9704 2.4648 29 1 4.6959 0.9822 0.6568 30 1 3.2256 1.3954 1.5827 31 1 5.7442 1.2318 2.7265 32 1 4.2346 0.9165 3.6362 33 1 6.2741 -0.7060 4.6858 34 1 4.6753 -1.1202 4.8804 35 1 3.2165 -1.6647 3.1721 36 1 4.2291 -2.6089 2.0350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251637954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = -4.156961 kcal Electronic energy + Delta-G solvation = -15164.676512 eV Core-core repulsion = 12876.183327 eV Total energy + Delta-G solvation = -2288.493185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10661 -35.94724 -33.12690 -31.39394 -28.92162 -27.83865 -26.67145 -24.60518 -23.57655 -20.70591 -19.97763 -18.70816 -16.54896 -16.27613 -15.50900 -15.12835 -14.01910 -13.87665 -13.66986 -13.40715 -12.89935 -12.13104 -11.93133 -11.50869 -11.48792 -11.32851 -11.24529 -10.86406 -10.79671 -10.52817 -10.37423 -10.18507 -10.09431 -9.96792 -9.81199 -8.61318 -8.44490 -8.35686 -7.20052 -6.32518 -4.02706 3.45908 3.47901 3.64085 4.50151 4.55288 4.81266 5.00413 5.23208 5.27535 5.39629 5.67766 5.79741 5.87247 5.93596 6.01094 6.01531 6.04885 6.17025 6.32711 6.42365 6.52049 6.59826 6.72047 6.73145 6.83561 7.00157 7.17790 7.18339 7.44939 7.48600 7.93953 8.10597 8.41181 8.63362 8.90192 9.67374 11.03848 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038011 B = 0.009160 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.446524 B = 3056.143902 C = 3388.847698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.200 3.800 3 H -0.008 1.008 4 C -0.583 4.583 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 1.069 2.931 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.287 1.287 12 N -0.523 5.523 13 C 0.018 3.982 14 C 0.091 3.909 15 H 0.097 0.903 16 C -0.150 4.150 17 C -0.154 4.154 18 C 0.084 3.916 19 H 0.086 0.914 20 N -0.842 5.842 21 C -0.110 4.110 22 H 0.045 0.955 23 H 0.015 0.985 24 H 0.061 0.939 25 H 0.269 0.731 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.336 0.664 34 H 0.337 0.663 35 H 0.070 0.930 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -1.221 10.308 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.093 3.907 3 H 0.009 0.991 4 C -0.621 4.621 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.551 5.551 8 Si 0.897 3.103 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.213 1.213 12 N -0.246 5.246 13 C -0.131 4.131 14 C -0.018 4.018 15 H 0.115 0.885 16 C -0.189 4.189 17 C -0.194 4.194 18 C -0.028 4.028 19 H 0.104 0.896 20 N -0.370 5.370 21 C -0.148 4.148 22 H 0.064 0.936 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.088 0.912 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.294 -2.433 8.336 10.170 hybrid contribution 0.027 1.992 1.911 2.761 sum 5.321 -0.441 10.247 11.555 Atomic orbital electron populations 1.21929 0.98553 0.99731 0.99476 1.19344 0.91447 0.92194 0.87710 0.99055 1.21920 1.38344 1.10628 0.91214 0.92519 1.25736 0.94669 0.96858 1.01202 1.70769 1.40766 1.10100 1.33466 0.83548 0.76288 0.75100 0.75324 1.21445 1.21482 1.21277 1.62231 1.06444 1.53753 1.02142 1.22436 1.00163 0.96392 0.94066 1.22217 0.88423 0.92359 0.98838 0.88464 1.22703 0.99614 1.00268 0.96343 1.23133 0.99509 0.98133 0.98625 1.22503 0.98562 0.92431 0.89302 0.89607 1.58873 1.11081 1.63751 1.03269 1.22493 0.95404 0.98810 0.98087 0.93622 0.96593 0.92054 0.91967 0.92100 0.92811 0.96684 0.91972 0.91794 0.92533 0.92503 0.85221 0.85014 0.91173 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.34 37.15 0.31 -3.01 16 2 C 0.20 4.98 1.46 -68.87 -0.10 4.87 16 3 H -0.01 -0.22 6.37 -51.93 -0.33 -0.55 16 4 C -0.58 -16.05 7.63 -34.44 -0.26 -16.31 16 5 H 0.06 1.59 6.90 -52.49 -0.36 1.23 16 6 C 0.02 0.54 5.18 -17.82 -0.09 0.45 16 7 N -0.91 -27.14 12.86 55.43 0.71 -26.43 16 8 Si 1.07 25.20 29.91 -169.99 -5.08 20.11 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.52 -11.17 4.61 -226.96 -1.05 -12.22 16 13 C 0.02 0.33 8.43 60.06 0.51 0.83 16 14 C 0.09 1.77 2.76 -66.59 -0.18 1.58 16 15 H 0.10 2.15 6.32 -51.93 -0.33 1.82 16 16 C -0.15 -2.66 5.40 -25.61 -0.14 -2.80 16 17 C -0.15 -2.15 6.51 -25.07 -0.16 -2.32 16 18 C 0.08 1.15 4.06 -65.72 -0.27 0.88 16 19 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 20 N -0.84 -9.75 9.39 -2.98 -0.03 -9.78 16 21 C -0.11 -1.76 5.96 -25.08 -0.15 -1.91 16 22 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.02 0.33 6.72 -51.93 -0.35 -0.02 16 24 H 0.06 1.59 6.27 -51.93 -0.33 1.26 16 25 H 0.27 7.99 6.16 -40.82 -0.25 7.74 16 26 H 0.06 1.10 6.39 -51.93 -0.33 0.77 16 27 H 0.05 0.86 6.01 -51.93 -0.31 0.55 16 28 H 0.01 0.27 6.13 -51.93 -0.32 -0.05 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.24 5.12 -51.93 -0.27 0.97 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.34 3.25 9.07 -39.29 -0.36 2.90 16 34 H 0.34 3.64 8.85 -39.29 -0.35 3.29 16 35 H 0.07 1.11 5.74 -51.92 -0.30 0.81 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 268.72 15.07 4.05 4.05 Total: -1.00 -29.01 268.72 -7.45 -36.46 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.51 Total: 5.54 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -0.54 Total: -17.73 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.36 Total: -48.43 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.01 -7.45 -36.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251637954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.299 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds