Wall clock time and date at job start Mon Mar 30 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47136 * 2 1 4 4 C 1.50701 * 109.47615 * 239.99887 * 2 1 3 5 5 H 1.07997 * 119.99928 * 244.70802 * 4 2 1 6 6 C 1.37875 * 119.99884 * 64.69405 * 4 2 1 7 7 N 1.31510 * 120.00127 * 7.57513 * 6 4 2 8 8 Si 1.86805 * 120.00017 * 187.56673 * 6 4 2 9 9 H 1.48497 * 109.46691 * 90.00308 * 8 6 4 10 10 H 1.48502 * 109.47017 * 330.00488 * 8 6 4 11 11 H 1.48499 * 109.47179 * 210.00663 * 8 6 4 12 12 N 1.46902 * 109.47235 * 119.99690 * 2 1 3 13 13 C 1.46895 * 110.99969 * 303.20007 * 12 2 1 14 14 C 1.46900 * 111.00394 * 179.24253 * 12 2 1 15 15 H 1.08998 * 110.01930 * 308.63148 * 14 12 2 16 16 C 1.53882 * 110.02840 * 70.02268 * 14 12 2 17 17 C 1.54264 * 106.59952 * 119.28718 * 16 14 12 18 18 C 1.54888 * 104.19424 * 23.60590 * 17 16 14 19 19 H 1.09007 * 110.75260 * 80.56115 * 18 17 16 20 20 N 1.46899 * 110.75906 * 203.74220 * 18 17 16 21 21 C 1.54264 * 110.03649 * 187.18777 * 14 12 2 22 22 H 1.09002 * 109.46905 * 186.12183 * 1 2 3 23 23 H 1.08998 * 109.47336 * 306.12072 * 1 2 3 24 24 H 1.09003 * 109.47339 * 66.12702 * 1 2 3 25 25 H 0.97006 * 120.00021 * 2.52811 * 7 6 4 26 26 H 1.09003 * 109.47409 * 60.00192 * 13 12 2 27 27 H 1.09003 * 109.47086 * 179.97438 * 13 12 2 28 28 H 1.08995 * 109.47267 * 299.99555 * 13 12 2 29 29 H 1.09004 * 110.03110 * 238.57248 * 16 14 12 30 30 H 1.08997 * 110.03026 * 359.95104 * 16 14 12 31 31 H 1.08999 * 110.48524 * 142.28609 * 17 16 14 32 32 H 1.09004 * 110.48620 * 264.79802 * 17 16 14 33 33 H 1.00901 * 111.00102 * 298.55279 * 20 18 17 34 34 H 1.00905 * 110.99668 * 62.49918 * 20 18 17 35 35 H 1.09007 * 110.48391 * 335.78726 * 21 14 12 36 36 H 1.08997 * 110.48756 * 98.42763 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5891 -1.6307 -1.1331 6 6 1.7810 -0.1856 -2.4804 7 7 1.2356 1.0055 -2.5960 8 14 2.2154 -1.1664 -4.0098 9 1 1.0571 -2.0083 -4.4033 10 1 3.3850 -2.0358 -3.7246 11 1 2.5492 -0.2349 -5.1170 12 7 2.0196 -0.6924 1.1995 13 6 1.4871 -0.0719 2.4198 14 6 3.4880 -0.7278 1.2245 15 1 3.8680 -1.1144 0.2789 16 6 4.0449 0.6840 1.4787 17 6 4.8515 0.6097 2.7915 18 6 5.2399 -0.8846 2.9147 19 1 6.1048 -1.1115 2.2913 20 7 5.5026 -1.2405 4.3155 21 6 3.9756 -1.6106 2.3917 22 1 -0.3633 -1.0218 0.1096 23 1 -0.3634 0.6058 0.8301 24 1 -0.3634 0.4159 -0.9398 25 1 1.0439 1.5302 -1.8029 26 1 0.3983 -0.1218 2.4075 27 1 1.8650 -0.6042 3.2927 28 1 1.8026 0.9704 2.4648 29 1 4.6959 0.9822 0.6568 30 1 3.2256 1.3954 1.5827 31 1 5.7442 1.2318 2.7265 32 1 4.2346 0.9165 3.6362 33 1 6.2741 -0.7060 4.6858 34 1 4.6753 -1.1202 4.8804 35 1 3.2165 -1.6647 3.1721 36 1 4.2291 -2.6089 2.0350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251637954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:57 Heat of formation + Delta-G solvation = -25.247537 kcal Electronic energy + Delta-G solvation = -15165.591068 eV Core-core repulsion = 12876.183327 eV Total energy + Delta-G solvation = -2289.407741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58510 -37.51683 -34.97134 -32.80790 -30.61470 -29.34401 -28.24409 -26.38556 -25.25482 -22.40774 -21.27725 -20.38479 -18.49137 -17.66448 -16.87569 -16.56577 -15.77478 -15.47312 -15.39429 -14.70998 -14.37022 -13.69069 -13.40735 -13.32211 -13.08910 -13.01372 -12.89076 -12.63017 -12.30874 -12.17805 -12.08049 -11.94939 -11.67300 -11.50553 -11.35595 -10.51182 -10.47968 -9.58266 -8.94042 -8.57016 -6.27789 1.52974 1.60650 1.78324 2.56922 3.15943 3.23097 3.54617 3.71323 3.93573 4.06080 4.35911 4.41152 4.49540 4.55616 4.60524 4.62593 4.65938 4.68587 4.76488 4.85916 4.90951 4.98644 5.02364 5.15513 5.30349 5.34699 5.44901 5.54575 5.95676 6.11382 6.23805 6.51014 6.55335 6.64610 6.78793 7.49987 8.79023 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038011 B = 0.009160 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.446524 B = 3056.143902 C = 3388.847698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.203 3.797 3 H -0.038 1.038 4 C -0.589 4.589 5 H 0.046 0.954 6 C -0.029 4.029 7 N -0.937 5.937 8 Si 1.112 2.888 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.532 5.532 13 C 0.020 3.980 14 C 0.087 3.913 15 H 0.060 0.940 16 C -0.147 4.147 17 C -0.140 4.140 18 C 0.097 3.903 19 H 0.085 0.915 20 N -0.839 5.839 21 C -0.100 4.100 22 H 0.045 0.955 23 H 0.040 0.960 24 H 0.035 0.965 25 H 0.257 0.743 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.015 0.985 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.351 0.649 34 H 0.346 0.654 35 H 0.078 0.922 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 -1.989 11.947 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H -0.020 1.020 4 C -0.627 4.627 5 H 0.065 0.935 6 C -0.227 4.227 7 N -0.575 5.575 8 Si 0.935 3.065 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.255 5.255 13 C -0.128 4.128 14 C -0.022 4.022 15 H 0.078 0.922 16 C -0.186 4.186 17 C -0.180 4.180 18 C -0.016 4.016 19 H 0.103 0.897 20 N -0.369 5.369 21 C -0.138 4.138 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.096 0.904 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.092 -3.205 10.018 12.155 hybrid contribution -0.206 2.233 1.461 2.676 sum 5.886 -0.972 11.479 12.937 Atomic orbital electron populations 1.21762 0.97782 0.99897 0.99117 1.19151 0.91969 0.90545 0.88756 1.02037 1.22187 1.37786 1.10145 0.92582 0.93538 1.27058 0.94176 0.97011 1.04428 1.70884 1.42682 1.11080 1.32850 0.82987 0.77022 0.74278 0.72232 1.20094 1.19857 1.21172 1.62180 1.07796 1.53508 1.02051 1.22486 1.00257 0.96626 0.93411 1.22195 0.87375 0.93943 0.98720 0.92196 1.22609 0.99188 0.98640 0.98208 1.23067 0.99608 0.98868 0.96442 1.22288 0.97177 0.91467 0.90648 0.89729 1.58800 1.12060 1.63955 1.02068 1.22380 0.96728 0.97988 0.96733 0.93616 0.94103 0.94597 0.93257 0.91936 0.89966 0.96667 0.93773 0.93621 0.90918 0.91143 0.83548 0.84110 0.90363 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.15 8.34 71.98 0.60 -5.55 16 2 C 0.20 10.35 1.46 44.17 0.06 10.42 16 3 H -0.04 -2.12 6.37 -2.39 -0.02 -2.13 16 4 C -0.59 -33.19 7.63 25.60 0.20 -32.99 16 5 H 0.05 2.66 6.90 -2.91 -0.02 2.64 16 6 C -0.03 -1.64 5.18 84.65 0.44 -1.20 16 7 N -0.94 -57.03 12.86 21.45 0.28 -56.75 16 8 Si 1.11 51.04 29.91 68.60 2.05 53.10 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 N -0.53 -22.66 4.61 -871.97 -4.02 -26.68 16 13 C 0.02 0.70 8.43 127.69 1.08 1.78 16 14 C 0.09 3.38 2.76 45.64 0.13 3.50 16 15 H 0.06 2.74 6.32 -2.39 -0.02 2.73 16 16 C -0.15 -5.21 5.40 31.32 0.17 -5.04 16 17 C -0.14 -3.56 6.51 31.67 0.21 -3.36 16 18 C 0.10 2.38 4.06 46.20 0.19 2.57 16 19 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 20 N -0.84 -16.35 9.39 -163.35 -1.53 -17.88 16 21 C -0.10 -3.03 5.96 31.67 0.19 -2.84 16 22 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.04 1.72 6.72 -2.39 -0.02 1.70 16 24 H 0.04 1.89 6.27 -2.39 -0.01 1.87 16 25 H 0.26 15.86 6.16 -92.70 -0.57 15.28 16 26 H 0.06 2.14 6.39 -2.39 -0.02 2.12 16 27 H 0.08 2.38 6.01 -2.39 -0.01 2.37 16 28 H 0.01 0.53 6.13 -2.39 -0.01 0.51 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.78 5.12 -2.39 -0.01 1.77 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.35 5.40 9.07 -89.69 -0.81 4.58 16 34 H 0.35 6.03 8.85 -89.69 -0.79 5.24 16 35 H 0.08 2.24 5.74 -2.38 -0.01 2.23 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -63.27 268.72 -0.30 -63.57 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.33 Total: 17.36 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.25 Total: -32.72 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -5.28 Total: -101.31 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.10 kcal Total: -63.27 -0.30 -63.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251637954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.327 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds