Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.50700 * 109.46875 * 240.00186 * 2 1 3 5 5 H 1.08009 * 120.00179 * 240.00108 * 4 2 1 6 6 C 1.37875 * 120.00131 * 59.99975 * 4 2 1 7 7 N 1.31513 * 120.00023 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00269 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47061 * 89.99657 * 8 6 4 10 10 H 1.48496 * 109.47202 * 210.00211 * 8 6 4 11 11 H 1.48504 * 109.47038 * 330.00024 * 8 6 4 12 12 N 1.46898 * 109.47485 * 120.00629 * 2 1 3 13 13 C 1.46895 * 111.00210 * 54.52064 * 12 2 1 14 14 C 1.46911 * 110.99382 * 290.57015 * 12 2 1 15 15 H 1.08997 * 110.53876 * 62.69488 * 14 12 2 16 16 C 1.54890 * 110.48173 * 185.30843 * 14 12 2 17 17 C 1.54886 * 102.74738 * 156.62182 * 16 14 12 18 18 C 1.54270 * 104.19571 * 322.05487 * 17 16 14 19 19 H 1.09002 * 110.03143 * 264.32816 * 18 17 16 20 20 N 1.46895 * 110.03298 * 142.89600 * 18 17 16 21 21 C 1.53873 * 106.59732 * 23.61064 * 18 17 16 22 22 H 1.09004 * 109.47042 * 292.81570 * 1 2 3 23 23 H 1.09003 * 109.47596 * 52.81146 * 1 2 3 24 24 H 1.08998 * 109.47297 * 172.81521 * 1 2 3 25 25 H 0.97007 * 120.00041 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.47086 * 298.29164 * 13 12 2 27 27 H 1.09001 * 109.47167 * 58.29196 * 13 12 2 28 28 H 1.09002 * 109.47417 * 178.29209 * 13 12 2 29 29 H 1.08993 * 110.76000 * 38.29980 * 16 14 12 30 30 H 1.09005 * 110.75494 * 274.93549 * 16 14 12 31 31 H 1.08998 * 110.48870 * 203.37626 * 17 16 14 32 32 H 1.08999 * 110.59932 * 80.78643 * 17 16 14 33 33 H 1.00903 * 110.99922 * 62.83386 * 20 18 17 34 34 H 1.00902 * 110.99600 * 186.78830 * 20 18 17 35 35 H 1.09001 * 110.03194 * 119.28634 * 21 18 17 36 36 H 1.08999 * 110.02889 * 240.71940 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3211 -1.1203 -4.0081 9 1 1.3425 -2.1616 -4.4119 10 1 2.4863 -0.1413 -5.1123 11 1 3.6291 -1.7583 -3.7124 12 7 2.0197 -0.6926 1.1993 13 6 1.4448 -2.0406 1.3005 14 6 1.7408 0.0909 2.4104 15 1 0.6664 0.2096 2.5500 16 6 2.3776 -0.5835 3.6508 17 6 2.5272 0.5968 4.6425 18 6 2.9307 1.7902 3.7521 19 1 4.0147 1.9042 3.7492 20 7 2.2960 3.0210 4.2423 21 6 2.4307 1.4685 2.3329 22 1 -0.3633 0.3985 0.9473 23 1 -0.3634 0.6212 -0.8187 24 1 -0.3634 -1.0196 -0.1285 25 1 0.7086 1.1613 -3.4844 26 1 0.3607 -1.9676 1.3878 27 1 1.6998 -2.6122 0.4081 28 1 1.8473 -2.5422 2.1806 29 1 3.3513 -1.0062 3.4035 30 1 1.7155 -1.3481 4.0573 31 1 3.3079 0.3847 5.3730 32 1 1.5809 0.7982 5.1445 33 1 2.6140 3.2458 5.1732 34 1 2.4597 3.7892 3.6089 35 1 1.7172 2.2257 2.0078 36 1 3.2721 1.4264 1.6413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251637956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -3.600735 kcal Electronic energy + Delta-G solvation = -15008.853869 eV Core-core repulsion = 12720.384804 eV Total energy + Delta-G solvation = -2288.469065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.70083 -35.93818 -32.85892 -31.50643 -28.57476 -28.25975 -25.62713 -25.08766 -23.97612 -20.59954 -19.74318 -18.24394 -16.19527 -15.99927 -15.04495 -14.94898 -14.75169 -14.14902 -13.50230 -12.91225 -12.70925 -12.57474 -11.70618 -11.37120 -11.20417 -10.99209 -10.83107 -10.75083 -10.65335 -10.52871 -10.45900 -10.31014 -10.07044 -9.98920 -9.54744 -8.78450 -8.54515 -8.33376 -7.04176 -5.95793 -3.98445 3.33473 3.39951 3.44183 4.45453 4.67849 4.90896 5.02317 5.08447 5.36342 5.61571 5.75203 5.84188 5.91627 6.12382 6.16236 6.19311 6.29171 6.35467 6.50538 6.52930 6.70091 6.75744 6.78821 6.91735 6.96479 7.22073 7.35284 7.55588 7.60320 7.77213 7.91704 8.23603 8.45712 8.70513 9.07972 9.66160 11.11765 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044057 B = 0.008203 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.391156 B = 3412.674967 C = 3659.241647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.209 3.791 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.035 3.965 14 C 0.084 3.916 15 H 0.038 0.962 16 C -0.114 4.114 17 C -0.116 4.116 18 C 0.086 3.914 19 H 0.034 0.966 20 N -0.845 5.845 21 C -0.107 4.107 22 H 0.007 0.993 23 H 0.081 0.919 24 H 0.030 0.970 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.333 0.667 34 H 0.340 0.660 35 H 0.066 0.934 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 0.638 11.345 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 H 0.060 0.940 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.113 4.113 14 C -0.026 4.026 15 H 0.056 0.944 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.026 4.026 19 H 0.052 0.948 20 N -0.375 5.375 21 C -0.146 4.146 22 H 0.026 0.974 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.244 0.303 11.065 11.294 hybrid contribution 0.274 0.081 -0.828 0.876 sum 2.518 0.384 10.237 10.549 Atomic orbital electron populations 1.22355 1.01008 1.00267 0.99008 1.19311 0.89611 0.94742 0.86078 0.94047 1.21142 1.30420 1.12365 0.89768 0.92066 1.24928 0.95330 0.95155 0.98933 1.69913 1.37216 1.23097 1.23241 0.86553 0.79211 0.79289 0.82672 1.20886 1.21367 1.19911 1.62492 1.58609 1.02119 1.02149 1.22188 0.96319 0.91980 1.00837 1.22304 0.96676 0.92846 0.90749 0.94384 1.22514 1.01243 0.96586 0.94881 1.22378 1.01209 0.94609 0.97253 1.22008 0.95000 0.89944 0.95600 0.94804 1.58913 1.65683 1.06311 1.06591 1.22192 1.00960 0.96929 0.94485 0.97446 0.89988 0.95052 0.93133 0.96672 0.91128 0.93933 0.90809 0.92365 0.92554 0.90990 0.85520 0.84756 0.91484 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 7.99 37.15 0.30 -3.87 16 2 C 0.21 5.30 2.14 -68.87 -0.15 5.16 16 3 H 0.04 1.14 6.65 -51.93 -0.35 0.80 16 4 C -0.50 -13.81 7.93 -34.44 -0.27 -14.08 16 5 H 0.06 1.70 7.07 -52.48 -0.37 1.33 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.80 11.40 55.43 0.63 -25.16 16 8 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.53 -11.56 4.53 -226.31 -1.03 -12.58 16 13 C 0.04 0.71 8.59 60.06 0.52 1.23 16 14 C 0.08 1.57 2.28 -66.05 -0.15 1.42 16 15 H 0.04 0.77 6.64 -51.93 -0.35 0.43 16 16 C -0.11 -1.76 5.29 -24.74 -0.13 -1.89 16 17 C -0.12 -1.56 6.53 -25.07 -0.16 -1.73 16 18 C 0.09 1.22 4.03 -66.60 -0.27 0.95 16 19 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 20 N -0.85 -10.55 9.11 -3.72 -0.03 -10.58 16 21 C -0.11 -1.91 4.86 -25.61 -0.12 -2.04 16 22 H 0.01 0.15 6.47 -51.93 -0.34 -0.18 16 23 H 0.08 2.24 6.30 -51.93 -0.33 1.91 16 24 H 0.03 0.77 6.80 -51.93 -0.35 0.41 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.01 0.30 6.49 -51.93 -0.34 -0.03 16 27 H 0.07 1.51 6.77 -51.93 -0.35 1.16 16 28 H 0.04 0.74 6.94 -51.93 -0.36 0.38 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 33 H 0.33 3.37 9.07 -39.29 -0.36 3.02 16 34 H 0.34 3.96 8.99 -39.29 -0.35 3.60 16 35 H 0.07 1.26 7.90 -51.93 -0.41 0.85 16 36 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -28.70 273.36 -7.75 -36.44 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.88 Total: 4.55 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.54 Total: -13.34 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.43 Total: -48.33 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.70 -7.75 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251637956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.843 kcal (2) G-P(sol) polarization free energy of solvation -28.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds