Wall clock time and date at job start Mon Mar 30 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99702 * 2 1 4 4 H 1.08997 * 109.50918 * 35.07816 * 3 2 1 5 5 C 1.53121 * 109.50382 * 274.99338 * 3 2 1 6 6 C 1.53114 * 109.15928 * 182.40711 * 5 3 2 7 7 C 1.53036 * 109.28107 * 57.66140 * 6 5 3 8 8 N 1.46853 * 109.51795 * 300.82056 * 7 6 5 9 9 C 1.46906 * 110.99537 * 185.84214 * 8 7 6 10 10 H 1.09001 * 109.46922 * 296.03899 * 9 8 7 11 11 C 1.52998 * 109.46629 * 176.04405 * 9 8 7 12 12 C 1.50695 * 109.47572 * 56.04296 * 9 8 7 13 13 H 1.08002 * 119.99710 * 29.14136 * 12 9 8 14 14 C 1.37874 * 119.99970 * 209.14707 * 12 9 8 15 15 N 1.31509 * 120.00161 * 353.35867 * 14 12 9 16 16 Si 1.86803 * 119.99892 * 173.35920 * 14 12 9 17 17 H 1.48500 * 109.47036 * 60.00015 * 16 14 12 18 18 H 1.48504 * 109.47216 * 299.99889 * 16 14 12 19 19 H 1.48500 * 109.46969 * 179.97438 * 16 14 12 20 20 C 1.46840 * 111.20133 * 61.74148 * 8 7 6 21 21 H 1.08997 * 109.46976 * 300.00388 * 1 2 3 22 22 H 1.09000 * 109.46723 * 60.00381 * 1 2 3 23 23 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 24 24 H 1.00901 * 111.00186 * 236.04484 * 2 1 3 25 25 H 1.09004 * 109.51812 * 62.49893 * 5 3 2 26 26 H 1.09001 * 109.52418 * 302.31916 * 5 3 2 27 27 H 1.08998 * 109.50468 * 297.71365 * 6 5 3 28 28 H 1.09001 * 109.53041 * 177.61666 * 6 5 3 29 29 H 1.08997 * 109.46263 * 180.80219 * 7 6 5 30 30 H 1.08997 * 109.45459 * 60.82359 * 7 6 5 31 31 H 1.09001 * 109.47254 * 306.36161 * 11 9 8 32 32 H 1.09000 * 109.47750 * 66.36289 * 11 9 8 33 33 H 1.09000 * 109.46974 * 186.36238 * 11 9 8 34 34 H 0.96996 * 120.00088 * 354.72000 * 15 14 12 35 35 H 1.08995 * 109.46508 * 58.27336 * 20 8 7 36 36 H 1.09005 * 109.46094 * 178.24198 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3409 2.0126 0.5904 5 6 2.0613 1.8938 -1.4379 6 6 2.6667 3.3001 -1.4344 7 6 4.0529 3.2520 -0.7877 8 7 3.9360 2.7465 0.5861 9 6 5.2266 2.8168 1.2844 10 1 5.9424 2.1585 0.7920 11 6 5.0445 2.3758 2.7381 12 6 5.7403 4.2331 1.2496 13 1 5.0451 5.0587 1.2097 14 6 7.0975 4.4748 1.2687 15 7 7.9400 3.4812 1.4486 16 14 7.7397 6.2139 1.0390 17 1 7.2049 7.0853 2.1160 18 1 7.3014 6.7332 -0.2814 19 1 9.2234 6.2058 1.1006 20 6 3.4011 1.3792 0.6052 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8307 -0.5261 -0.7814 25 1 1.0563 1.9307 -1.8583 26 1 2.6840 1.2305 -2.0382 27 1 2.0232 3.9720 -0.8664 28 1 2.7556 3.6611 -2.4591 29 1 4.4808 4.2543 -0.7708 30 1 4.6997 2.5906 -1.3642 31 1 4.2478 2.9604 3.1980 32 1 4.7822 1.3183 2.7669 33 1 5.9739 2.5346 3.2850 34 1 7.6062 2.5917 1.6440 35 1 4.0510 0.7267 0.0222 36 1 3.3556 1.0213 1.6338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251671896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:11 Heat of formation + Delta-G solvation = -8.184543 kcal Electronic energy + Delta-G solvation = -14985.942994 eV Core-core repulsion = 12697.275160 eV Total energy + Delta-G solvation = -2288.667834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.81465 -35.81908 -33.57107 -31.71949 -29.32911 -28.49332 -25.13318 -24.44596 -23.30077 -21.48706 -20.21519 -19.33266 -16.78177 -15.70025 -15.18151 -14.43675 -14.22975 -13.94929 -13.70463 -13.23748 -12.94213 -12.76766 -12.34505 -12.30347 -11.61386 -11.21980 -11.08022 -10.87948 -10.71909 -10.67505 -10.55364 -10.15160 -10.06708 -10.01203 -9.67382 -8.57093 -8.29201 -8.26844 -7.20028 -6.33225 -4.04174 3.45180 3.46197 3.65256 4.23009 4.54653 4.93910 5.13223 5.22504 5.34361 5.41191 5.43322 5.44776 5.74160 5.83586 5.92892 5.97125 6.16196 6.21282 6.25454 6.36748 6.41656 6.59877 6.71578 6.78866 6.81450 6.99612 7.08493 7.19838 7.43960 7.50420 7.97629 8.10655 8.45857 8.63599 8.90584 9.67811 11.03468 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049427 B = 0.008101 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.360086 B = 3455.419645 C = 3811.251297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.692 5.692 3 C 0.091 3.909 4 H 0.082 0.918 5 C -0.145 4.145 6 C -0.113 4.113 7 C 0.068 3.932 8 N -0.531 5.531 9 C 0.196 3.804 10 H 0.002 0.998 11 C -0.130 4.130 12 C -0.582 4.582 13 H 0.056 0.944 14 C 0.019 3.981 15 N -0.913 5.913 16 Si 1.066 2.934 17 H -0.288 1.288 18 H -0.288 1.288 19 H -0.284 1.284 20 C 0.065 3.935 21 H 0.063 0.937 22 H 0.019 0.981 23 H 0.062 0.938 24 H 0.338 0.662 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.015 0.985 31 H 0.045 0.955 32 H 0.018 0.982 33 H 0.049 0.951 34 H 0.269 0.731 35 H 0.017 0.983 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 -3.835 -4.757 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.321 5.321 3 C -0.019 4.019 4 H 0.100 0.900 5 C -0.184 4.184 6 C -0.152 4.152 7 C -0.061 4.061 8 N -0.256 5.256 9 C 0.090 3.910 10 H 0.020 0.980 11 C -0.188 4.188 12 C -0.621 4.621 13 H 0.074 0.926 14 C -0.185 4.185 15 N -0.549 5.549 16 Si 0.894 3.106 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.209 1.209 20 C -0.064 4.064 21 H 0.082 0.918 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.155 0.845 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.265 -2.726 -3.944 11.329 hybrid contribution -1.080 -1.234 -1.233 2.052 sum -11.345 -3.960 -5.177 13.084 Atomic orbital electron populations 1.22174 0.88236 1.01263 1.00264 1.60440 1.07342 1.14621 1.49707 1.21655 0.97399 0.87942 0.94939 0.90007 1.22269 0.99895 0.98441 0.97845 1.21572 0.98048 0.95748 0.99793 1.21875 0.93888 1.01756 0.88536 1.61983 1.30074 1.18666 1.14885 1.19410 0.84324 0.97281 0.90023 0.98006 1.21917 1.00592 0.96840 0.99483 1.21842 0.93835 0.91453 1.54947 0.92574 1.25808 0.93387 1.05335 0.94004 1.70778 1.37540 1.02047 1.44538 0.83593 0.76127 0.74332 0.76524 1.21403 1.21490 1.20909 1.21970 0.92987 0.90959 1.00477 0.91769 0.96283 0.91881 0.84522 0.92971 0.92567 0.91565 0.92439 0.89186 0.96689 0.93594 0.96274 0.93241 0.91959 0.96483 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.50 60.07 0.63 0.97 16 2 N -0.69 -9.38 6.61 -113.92 -0.75 -10.13 16 3 C 0.09 1.42 2.63 -67.63 -0.18 1.24 16 4 H 0.08 1.36 7.80 -51.93 -0.41 0.95 16 5 C -0.15 -2.11 5.25 -26.61 -0.14 -2.25 16 6 C -0.11 -1.84 6.09 -26.65 -0.16 -2.00 16 7 C 0.07 1.39 5.23 -3.83 -0.02 1.37 16 8 N -0.53 -11.67 4.52 -228.08 -1.03 -12.70 16 9 C 0.20 4.98 1.71 -68.86 -0.12 4.86 16 10 H 0.00 0.06 6.94 -51.93 -0.36 -0.30 16 11 C -0.13 -3.08 8.63 37.16 0.32 -2.76 16 12 C -0.58 -16.12 6.89 -34.44 -0.24 -16.36 16 13 H 0.06 1.58 7.67 -52.49 -0.40 1.18 16 14 C 0.02 0.53 5.45 -17.82 -0.10 0.44 16 15 N -0.91 -27.41 13.55 55.43 0.75 -26.66 16 16 Si 1.07 25.03 29.91 -169.99 -5.08 19.95 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.07 1.25 4.82 -3.83 -0.02 1.23 16 21 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 22 H 0.02 0.20 7.49 -51.93 -0.39 -0.19 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.34 4.18 8.54 -39.29 -0.34 3.85 16 25 H 0.05 0.67 7.52 -51.93 -0.39 0.28 16 26 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 2.04 6.66 -51.93 -0.35 1.69 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.02 0.40 6.63 -51.93 -0.34 0.06 16 33 H 0.05 1.23 7.87 -51.93 -0.41 0.82 16 34 H 0.27 8.10 6.52 -40.82 -0.27 7.83 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 1.51 6.14 -51.93 -0.32 1.19 16 LS Contribution 277.89 15.07 4.19 4.19 Total: -1.00 -29.25 277.89 -8.08 -37.33 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.14 Total: 1.28 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.02 Total: -13.25 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -1.03 Total: -49.49 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.25 -8.08 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251671896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.145 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds