Wall clock time and date at job start Mon Mar 30 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99702 * 2 1 4 4 H 1.08997 * 109.50918 * 35.07816 * 3 2 1 5 5 C 1.53121 * 109.50382 * 274.99338 * 3 2 1 6 6 C 1.53114 * 109.15928 * 182.40711 * 5 3 2 7 7 C 1.53036 * 109.28107 * 57.66140 * 6 5 3 8 8 N 1.46853 * 109.51795 * 300.82056 * 7 6 5 9 9 C 1.46906 * 110.99537 * 185.84214 * 8 7 6 10 10 H 1.09001 * 109.46922 * 296.03899 * 9 8 7 11 11 C 1.52998 * 109.46629 * 176.04405 * 9 8 7 12 12 C 1.50695 * 109.47572 * 56.04296 * 9 8 7 13 13 H 1.08002 * 119.99710 * 29.14136 * 12 9 8 14 14 C 1.37874 * 119.99970 * 209.14707 * 12 9 8 15 15 N 1.31509 * 120.00161 * 353.35867 * 14 12 9 16 16 Si 1.86803 * 119.99892 * 173.35920 * 14 12 9 17 17 H 1.48500 * 109.47036 * 60.00015 * 16 14 12 18 18 H 1.48504 * 109.47216 * 299.99889 * 16 14 12 19 19 H 1.48500 * 109.46969 * 179.97438 * 16 14 12 20 20 C 1.46840 * 111.20133 * 61.74148 * 8 7 6 21 21 H 1.08997 * 109.46976 * 300.00388 * 1 2 3 22 22 H 1.09000 * 109.46723 * 60.00381 * 1 2 3 23 23 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 24 24 H 1.00901 * 111.00186 * 236.04484 * 2 1 3 25 25 H 1.09004 * 109.51812 * 62.49893 * 5 3 2 26 26 H 1.09001 * 109.52418 * 302.31916 * 5 3 2 27 27 H 1.08998 * 109.50468 * 297.71365 * 6 5 3 28 28 H 1.09001 * 109.53041 * 177.61666 * 6 5 3 29 29 H 1.08997 * 109.46263 * 180.80219 * 7 6 5 30 30 H 1.08997 * 109.45459 * 60.82359 * 7 6 5 31 31 H 1.09001 * 109.47254 * 306.36161 * 11 9 8 32 32 H 1.09000 * 109.47750 * 66.36289 * 11 9 8 33 33 H 1.09000 * 109.46974 * 186.36238 * 11 9 8 34 34 H 0.96996 * 120.00088 * 354.72000 * 15 14 12 35 35 H 1.08995 * 109.46508 * 58.27336 * 20 8 7 36 36 H 1.09005 * 109.46094 * 178.24198 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3409 2.0126 0.5904 5 6 2.0613 1.8938 -1.4379 6 6 2.6667 3.3001 -1.4344 7 6 4.0529 3.2520 -0.7877 8 7 3.9360 2.7465 0.5861 9 6 5.2266 2.8168 1.2844 10 1 5.9424 2.1585 0.7920 11 6 5.0445 2.3758 2.7381 12 6 5.7403 4.2331 1.2496 13 1 5.0451 5.0587 1.2097 14 6 7.0975 4.4748 1.2687 15 7 7.9400 3.4812 1.4486 16 14 7.7397 6.2139 1.0390 17 1 7.2049 7.0853 2.1160 18 1 7.3014 6.7332 -0.2814 19 1 9.2234 6.2058 1.1006 20 6 3.4011 1.3792 0.6052 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8307 -0.5261 -0.7814 25 1 1.0563 1.9307 -1.8583 26 1 2.6840 1.2305 -2.0382 27 1 2.0232 3.9720 -0.8664 28 1 2.7556 3.6611 -2.4591 29 1 4.4808 4.2543 -0.7708 30 1 4.6997 2.5906 -1.3642 31 1 4.2478 2.9604 3.1980 32 1 4.7822 1.3183 2.7669 33 1 5.9739 2.5346 3.2850 34 1 7.6062 2.5917 1.6440 35 1 4.0510 0.7267 0.0222 36 1 3.3556 1.0213 1.6338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251671896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:10 Heat of formation + Delta-G solvation = -29.189705 kcal Electronic energy + Delta-G solvation = -14986.853847 eV Core-core repulsion = 12697.275160 eV Total energy + Delta-G solvation = -2289.578686 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32044 -37.35114 -35.24525 -33.49176 -30.72722 -30.28626 -27.01332 -25.71875 -24.94863 -22.88418 -22.03119 -20.85063 -18.80497 -17.27927 -16.62567 -15.76159 -15.69753 -15.58197 -15.41550 -14.68452 -14.58135 -14.24994 -13.70596 -13.53992 -13.32404 -13.01868 -12.65790 -12.59969 -12.46702 -12.21412 -12.17444 -11.92870 -11.77271 -11.56981 -11.21271 -10.66923 -10.39477 -9.36085 -9.04601 -8.59136 -6.30997 1.53850 1.61243 1.80669 2.57124 2.94137 3.22235 3.54723 3.83929 3.91960 4.08157 4.28371 4.41341 4.49651 4.53551 4.60142 4.68090 4.70444 4.77511 4.78562 4.84376 4.95443 5.01980 5.06012 5.11268 5.12326 5.26895 5.34049 5.50479 5.96654 6.03849 6.05225 6.44836 6.49274 6.51202 6.76471 7.49171 8.76986 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049427 B = 0.008101 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.360086 B = 3455.419645 C = 3811.251297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.701 5.701 3 C 0.102 3.898 4 H 0.077 0.923 5 C -0.137 4.137 6 C -0.104 4.104 7 C 0.067 3.933 8 N -0.533 5.533 9 C 0.195 3.805 10 H -0.034 1.034 11 C -0.117 4.117 12 C -0.586 4.586 13 H 0.049 0.951 14 C -0.031 4.031 15 N -0.939 5.939 16 Si 1.112 2.888 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.286 1.286 20 C 0.067 3.933 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.081 0.919 24 H 0.345 0.655 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.063 0.937 30 H -0.001 1.001 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.256 0.744 35 H 0.005 0.995 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 -3.563 -5.669 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.331 5.331 3 C -0.008 4.008 4 H 0.095 0.905 5 C -0.177 4.177 6 C -0.142 4.142 7 C -0.061 4.061 8 N -0.258 5.258 9 C 0.088 3.912 10 H -0.017 1.017 11 C -0.176 4.176 12 C -0.624 4.624 13 H 0.068 0.932 14 C -0.229 4.229 15 N -0.577 5.577 16 Si 0.934 3.066 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.212 1.212 20 C -0.062 4.062 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.099 0.901 24 H 0.164 0.836 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.017 0.983 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.340 -2.473 -4.863 13.492 hybrid contribution -0.496 -1.390 -0.947 1.754 sum -12.836 -3.863 -5.810 14.609 Atomic orbital electron populations 1.22236 0.86266 1.02656 1.00652 1.60342 1.09145 1.13173 1.50445 1.21414 0.94664 0.89397 0.95365 0.90460 1.22213 1.01402 0.96956 0.97080 1.21506 0.94921 0.97296 1.00518 1.21894 0.96656 0.99607 0.87947 1.61952 1.27686 1.20614 1.15593 1.19291 0.85302 0.95538 0.91047 1.01660 1.21734 0.99621 0.98166 0.98045 1.22067 0.93930 0.92327 1.54115 0.93233 1.27219 0.94104 1.08281 0.93255 1.70900 1.37927 1.02003 1.46842 0.82996 0.75435 0.70346 0.77787 1.19580 1.19618 1.21202 1.22012 0.95101 0.88900 1.00191 0.92120 0.95068 0.90062 0.83649 0.90003 0.92362 0.91349 0.90139 0.91843 0.98300 0.93147 0.94313 0.95230 0.93411 0.97654 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.50 127.69 1.34 1.92 16 2 N -0.70 -17.19 6.61 -514.32 -3.40 -20.58 16 3 C 0.10 2.98 2.63 44.97 0.12 3.10 16 4 H 0.08 2.37 7.80 -2.39 -0.02 2.35 16 5 C -0.14 -3.57 5.25 30.67 0.16 -3.41 16 6 C -0.10 -3.15 6.09 30.64 0.19 -2.96 16 7 C 0.07 2.77 5.23 86.32 0.45 3.23 16 8 N -0.53 -23.63 4.52 -875.50 -3.96 -27.59 16 9 C 0.20 10.23 1.71 44.17 0.08 10.30 16 10 H -0.03 -2.02 6.94 -2.39 -0.02 -2.03 16 11 C -0.12 -5.67 8.63 71.98 0.62 -5.04 16 12 C -0.59 -33.11 6.89 25.60 0.18 -32.94 16 13 H 0.05 2.82 7.67 -2.91 -0.02 2.79 16 14 C -0.03 -1.76 5.45 84.65 0.46 -1.30 16 15 N -0.94 -58.00 13.55 21.45 0.29 -57.71 16 16 Si 1.11 50.50 29.91 68.60 2.05 52.55 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 C 0.07 2.54 4.82 86.33 0.42 2.95 16 21 H 0.06 1.19 8.06 -2.39 -0.02 1.17 16 22 H 0.03 0.52 7.49 -2.39 -0.02 0.50 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.35 7.62 8.54 -89.69 -0.77 6.85 16 25 H 0.08 1.72 7.52 -2.38 -0.02 1.71 16 26 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 2.92 6.66 -2.39 -0.02 2.90 16 30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 31 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.67 6.63 -2.39 -0.02 1.65 16 33 H 0.03 1.50 7.87 -2.39 -0.02 1.48 16 34 H 0.26 16.08 6.52 -92.71 -0.60 15.47 16 35 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.07 2.63 6.14 -2.38 -0.01 2.61 16 Total: -1.00 -64.03 277.89 -0.57 -64.59 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.44 Total: 12.88 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.01 Total: -24.14 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -7.06 Total: -105.88 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -64.03 -0.57 -64.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251671896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.404 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds