Wall clock time and date at job start Mon Mar 30 2020 02:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 108.75527 * 2 1 4 4 C 1.50741 * 108.79019 * 241.65186 * 2 1 3 5 5 C 1.54510 * 108.94150 * 146.44981 * 4 2 1 6 6 N 1.40078 * 111.51310 * 76.02486 * 5 4 2 7 7 C 1.46902 * 111.00420 * 171.85826 * 6 5 4 8 8 C 1.47689 * 114.56275 * 298.54648 * 6 5 4 9 9 C 1.50781 * 108.10580 * 81.30495 * 8 6 5 10 10 H 1.08993 * 108.99445 * 26.02292 * 9 8 6 11 11 C 1.50701 * 108.99184 * 144.85134 * 9 8 6 12 12 H 1.07994 * 120.00366 * 33.64108 * 11 9 8 13 13 C 1.37876 * 120.00018 * 213.64801 * 11 9 8 14 14 N 1.31513 * 120.00376 * 179.97438 * 13 11 9 15 15 Si 1.86806 * 119.99746 * 359.97438 * 13 11 9 16 16 H 1.48504 * 109.46954 * 90.00591 * 15 13 11 17 17 H 1.48501 * 109.47150 * 209.99921 * 15 13 11 18 18 H 1.48497 * 109.47222 * 330.00327 * 15 13 11 19 19 N 1.47754 * 111.91437 * 265.39124 * 9 8 6 20 20 C 1.46903 * 111.00182 * 275.06108 * 19 9 8 21 21 H 1.09003 * 109.47016 * 178.35508 * 1 2 3 22 22 H 1.08998 * 109.47139 * 298.34753 * 1 2 3 23 23 H 1.09000 * 109.47639 * 58.34841 * 1 2 3 24 24 H 1.08999 * 109.55633 * 266.28836 * 4 2 1 25 25 H 1.08999 * 109.56036 * 26.50275 * 4 2 1 26 26 H 1.08999 * 109.07343 * 196.54415 * 5 4 2 27 27 H 1.09004 * 109.07493 * 315.49997 * 5 4 2 28 28 H 1.09002 * 109.47358 * 63.94805 * 7 6 5 29 29 H 1.08992 * 109.47275 * 183.95318 * 7 6 5 30 30 H 1.09003 * 109.46570 * 303.95351 * 7 6 5 31 31 H 1.08998 * 109.73998 * 200.95523 * 8 6 5 32 32 H 1.09002 * 109.74005 * 321.60493 * 8 6 5 33 33 H 0.97004 * 119.99976 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.46598 * 180.98974 * 20 19 9 35 35 H 1.09005 * 109.47031 * 300.98479 * 20 19 9 36 36 H 1.08993 * 109.46949 * 60.98721 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8804 1.0322 0.0000 4 6 2.0155 -0.6776 -1.2559 5 6 3.3301 -0.0060 -1.7121 6 7 4.4135 -0.4068 -0.9198 7 6 5.6822 0.0819 -1.4764 8 6 4.2924 -0.0549 0.5094 9 6 3.4203 -1.0896 1.1745 10 1 3.4858 -2.0221 0.6140 11 6 3.9203 -1.3245 2.5766 12 1 4.3524 -0.5103 3.1393 13 6 3.8262 -2.5789 3.1410 14 7 4.2630 -2.7841 4.3644 15 14 3.0782 -3.9872 2.1678 16 1 4.1452 -4.6829 1.4043 17 1 2.4322 -4.9452 3.1006 18 1 2.0628 -3.4530 1.2251 19 7 2.0069 -0.6632 1.2349 20 6 1.7609 0.1788 2.4134 21 1 -0.3633 -1.0273 -0.0295 22 1 -0.3633 0.4879 0.9044 23 1 -0.3634 0.5393 -0.8748 24 1 2.1960 -1.7335 -1.0544 25 1 1.2629 -0.5789 -2.0382 26 1 3.5276 -0.2774 -2.7491 27 1 3.2197 1.0763 -1.6433 28 1 5.6928 1.1716 -1.4544 29 1 6.5114 -0.3017 -0.8822 30 1 5.7834 -0.2617 -2.5059 31 1 5.2789 -0.0522 0.9729 32 1 3.8366 0.9303 0.6086 33 1 4.1971 -3.6668 4.7613 34 1 0.7094 0.4641 2.4428 35 1 2.0118 -0.3779 3.3164 36 1 2.3790 1.0746 2.3552 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251720235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:27 Heat of formation + Delta-G solvation = 19.071726 kcal Electronic energy + Delta-G solvation = -15603.617278 eV Core-core repulsion = 13316.131364 eV Total energy + Delta-G solvation = -2287.485914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23600 -35.65236 -33.56329 -31.63407 -29.24284 -28.12638 -25.65948 -25.10755 -23.39383 -21.54574 -20.24144 -18.26390 -16.79971 -15.67288 -15.28466 -14.69762 -14.43709 -14.03377 -13.27595 -13.11211 -12.55537 -12.31501 -12.21561 -12.02009 -11.79710 -11.47498 -11.27743 -11.12832 -10.84278 -10.70468 -10.29231 -10.18471 -10.01341 -9.62031 -9.49689 -9.04196 -8.50688 -7.78992 -6.97550 -6.04745 -4.07359 3.44224 3.51429 3.69496 4.47387 4.57361 4.81303 5.24783 5.27849 5.45601 5.59895 5.68012 5.76216 5.84888 5.90488 6.09386 6.10460 6.13800 6.17050 6.20244 6.41800 6.45839 6.48899 6.57105 6.65738 6.72696 6.88961 7.10717 7.30777 7.66172 7.67783 7.89415 8.21984 8.47887 8.65353 8.97374 9.59866 11.06168 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.014312 C = 0.011846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.621744 B = 1955.927304 C = 2363.154500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.022 0.978 4 C -0.116 4.116 5 C 0.078 3.922 6 N -0.562 5.562 7 C 0.034 3.966 8 C 0.056 3.944 9 C 0.182 3.818 10 H 0.060 0.940 11 C -0.511 4.511 12 H 0.070 0.930 13 C 0.083 3.917 14 N -0.898 5.898 15 Si 0.879 3.121 16 H -0.283 1.283 17 H -0.295 1.295 18 H -0.244 1.244 19 N -0.544 5.544 20 C 0.048 3.952 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.009 0.991 28 H 0.015 0.985 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 5.147 -10.552 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.040 0.960 4 C -0.154 4.154 5 C -0.052 4.052 6 N -0.286 5.286 7 C -0.114 4.114 8 C -0.072 4.072 9 C 0.077 3.923 10 H 0.078 0.922 11 C -0.550 4.550 12 H 0.088 0.912 13 C -0.121 4.121 14 N -0.535 5.535 15 Si 0.706 3.294 16 H -0.209 1.209 17 H -0.222 1.222 18 H -0.167 1.167 19 N -0.270 5.270 20 C -0.100 4.100 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -3.639 4.145 -10.396 11.768 hybrid contribution 0.136 0.886 -0.438 0.997 sum -3.503 5.030 -10.834 12.448 Atomic orbital electron populations 1.21906 0.95847 1.01710 1.00310 1.21326 0.94665 0.95370 0.91637 0.96042 1.21608 0.95356 1.02039 0.96395 1.20991 0.91662 0.95977 0.96576 1.59109 1.02031 1.63607 1.03830 1.22290 0.92438 0.96869 0.99788 1.22621 1.02094 0.97625 0.84832 1.19562 0.82088 0.94105 0.96533 0.92238 1.20882 1.39900 0.96684 0.97540 0.91240 1.25012 0.93661 0.98839 0.94538 1.69923 1.46284 1.23013 1.14272 0.86753 0.80661 0.81324 0.80627 1.20888 1.22205 1.16679 1.62656 1.23190 1.40995 1.00176 1.22072 0.96845 0.94846 0.96202 0.92352 0.92981 0.93681 0.89978 0.91573 0.91998 0.97297 0.96640 0.91361 0.92326 0.90328 0.96065 0.92673 0.94594 0.89263 0.97902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.00 37.16 0.33 -1.86 16 2 C 0.08 1.43 1.81 -68.20 -0.12 1.31 16 3 H 0.02 0.41 6.40 -51.93 -0.33 0.07 16 4 C -0.12 -1.96 5.19 -27.07 -0.14 -2.10 16 5 C 0.08 1.27 4.95 -6.56 -0.03 1.24 16 6 N -0.56 -10.35 4.23 -248.02 -1.05 -11.40 16 7 C 0.03 0.52 9.46 60.07 0.57 1.08 16 8 C 0.06 1.18 4.83 -4.50 -0.02 1.15 16 9 C 0.18 4.31 1.29 -69.51 -0.09 4.22 16 10 H 0.06 1.50 4.59 -51.93 -0.24 1.27 16 11 C -0.51 -13.93 6.23 -34.44 -0.21 -14.14 16 12 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 13 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 14 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 15 Si 0.88 22.17 27.00 -169.99 -4.59 17.58 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.24 -6.05 6.83 56.52 0.39 -5.66 16 19 N -0.54 -11.90 4.62 -229.37 -1.06 -12.96 16 20 C 0.05 1.03 8.63 60.07 0.52 1.55 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 23 H 0.04 0.59 8.08 -51.93 -0.42 0.18 16 24 H 0.08 1.59 7.19 -51.93 -0.37 1.21 16 25 H 0.07 0.93 7.68 -51.93 -0.40 0.54 16 26 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 27 H 0.01 0.15 7.60 -51.93 -0.39 -0.25 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 1.03 7.95 -51.93 -0.41 0.62 16 30 H 0.06 0.77 7.98 -51.93 -0.41 0.35 16 31 H 0.08 1.71 7.30 -51.93 -0.38 1.33 16 32 H 0.02 0.45 6.28 -51.93 -0.33 0.12 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.04 0.67 6.37 -51.93 -0.33 0.34 16 35 H 0.09 2.15 6.60 -51.93 -0.34 1.81 16 36 H 0.00 0.05 7.70 -51.93 -0.40 -0.35 16 LS Contribution 266.46 15.07 4.02 4.02 Total: -1.00 -29.25 266.46 -7.14 -36.39 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.93 Total: -2.11 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 0.70 Total: -5.28 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -1.34 Total: -50.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.59 Total: 17.58 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.25 -7.14 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251720235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.463 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds