Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 108.91659 * 2 1 4 4 C 1.46138 * 108.93474 * 118.69961 * 2 1 3 5 5 C 1.54253 * 111.90090 * 181.56578 * 4 2 1 6 6 N 1.44255 * 108.64347 * 281.39780 * 5 4 2 7 7 C 1.46905 * 110.99739 * 219.84935 * 6 5 4 8 8 C 1.48197 * 114.27325 * 93.39401 * 6 5 4 9 9 C 1.53928 * 112.77313 * 318.13017 * 8 6 5 10 10 H 1.09004 * 108.86935 * 79.07503 * 9 8 6 11 11 C 1.50697 * 108.86671 * 197.58845 * 9 8 6 12 12 H 1.08002 * 119.99878 * 62.77701 * 11 9 8 13 13 C 1.37874 * 120.00792 * 242.78255 * 11 9 8 14 14 N 1.31509 * 120.00414 * 189.00535 * 13 11 9 15 15 Si 1.86805 * 119.99452 * 8.99923 * 13 11 9 16 16 H 1.48501 * 109.47042 * 275.21279 * 15 13 11 17 17 H 1.48502 * 109.46912 * 155.21611 * 15 13 11 18 18 H 1.48500 * 109.47125 * 35.21884 * 15 13 11 19 19 N 1.44249 * 112.55114 * 318.38414 * 9 8 6 20 20 C 1.46902 * 111.00314 * 217.13506 * 19 9 8 21 21 H 1.08994 * 109.47583 * 301.29863 * 1 2 3 22 22 H 1.08999 * 109.46929 * 61.29950 * 1 2 3 23 23 H 1.09007 * 109.46966 * 181.29409 * 1 2 3 24 24 H 1.09004 * 108.99170 * 60.94692 * 4 2 1 25 25 H 1.09001 * 108.93010 * 302.15053 * 4 2 1 26 26 H 1.09000 * 109.60778 * 161.64523 * 5 4 2 27 27 H 1.09004 * 109.75069 * 41.22940 * 5 4 2 28 28 H 1.09004 * 109.46848 * 291.75367 * 7 6 5 29 29 H 1.08997 * 109.47107 * 51.75025 * 7 6 5 30 30 H 1.08998 * 109.46571 * 171.75743 * 7 6 5 31 31 H 1.08999 * 108.81702 * 197.28272 * 8 6 5 32 32 H 1.08994 * 108.73475 * 78.92433 * 8 6 5 33 33 H 0.97005 * 120.00212 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.47368 * 58.24236 * 20 19 9 35 35 H 1.09003 * 109.47802 * 178.24816 * 20 19 9 36 36 H 1.09007 * 109.47080 * 298.24823 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8834 1.0311 0.0000 4 6 2.0042 -0.6638 1.2125 5 6 3.5441 -0.6679 1.3014 6 7 4.0531 -1.7063 0.4391 7 6 5.1829 -2.4049 1.0666 8 6 4.4041 -1.2474 -0.9256 9 6 3.3679 -0.2711 -1.5108 10 1 3.5373 0.7187 -1.0868 11 6 3.5553 -0.1992 -3.0043 12 1 3.4085 -1.0812 -3.6101 13 6 3.9143 0.9925 -3.5977 14 7 3.9058 1.1035 -4.9080 15 14 4.4126 2.4494 -2.5400 16 1 3.1978 3.1879 -2.1108 17 1 5.2901 3.3541 -3.3254 18 1 5.1460 1.9645 -1.3432 19 7 2.0107 -0.6709 -1.2297 20 6 1.1292 -0.3785 -2.3678 21 1 -0.3634 0.5338 0.8780 22 1 -0.3633 0.4935 -0.9014 23 1 -0.3633 -1.0275 0.0232 24 1 1.6459 -1.6933 1.2166 25 1 1.6000 -0.1442 2.0812 26 1 3.8507 -0.8628 2.3291 27 1 3.9342 0.2980 0.9804 28 1 6.0358 -1.7294 1.1335 29 1 4.8982 -2.7309 2.0669 30 1 5.4530 -3.2725 0.4646 31 1 4.4783 -2.1156 -1.5803 32 1 5.3738 -0.7510 -0.8893 33 1 4.1588 1.9418 -5.3254 34 1 1.4963 -0.8960 -3.2541 35 1 0.1184 -0.7180 -2.1413 36 1 1.1187 0.6958 -2.5527 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251720238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = 23.487975 kcal Electronic energy + Delta-G solvation = -15606.012295 eV Core-core repulsion = 13318.717885 eV Total energy + Delta-G solvation = -2287.294411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99591 -35.68345 -33.79597 -31.70865 -29.34712 -27.91529 -25.60051 -25.31197 -23.08704 -21.71229 -19.53502 -18.68339 -17.00817 -15.74415 -15.21848 -14.45212 -14.32181 -14.06044 -13.42212 -12.98540 -12.56749 -12.44436 -12.34596 -11.91478 -11.69501 -11.40271 -11.14132 -11.07889 -10.89250 -10.69032 -10.42227 -10.23774 -9.90080 -9.81063 -9.65621 -9.04459 -8.59081 -7.51407 -7.04636 -6.19793 -4.17044 3.18201 3.27362 3.28919 4.30368 4.51397 4.92935 5.21847 5.34198 5.43987 5.69540 5.73897 5.83653 5.96085 6.00978 6.12613 6.16890 6.20657 6.27226 6.30766 6.38324 6.52217 6.55202 6.66248 6.73643 6.79778 6.98105 7.28431 7.33802 7.42684 7.77867 7.93581 8.15289 8.41165 8.65455 8.88175 9.44157 10.92623 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026384 B = 0.014399 C = 0.011683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.979782 B = 1944.167673 C = 2396.065947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.023 0.977 4 C -0.100 4.100 5 C 0.068 3.932 6 N -0.551 5.551 7 C 0.033 3.967 8 C 0.087 3.913 9 C 0.180 3.820 10 H 0.005 0.995 11 C -0.513 4.513 12 H 0.083 0.917 13 C 0.077 3.923 14 N -0.889 5.889 15 Si 0.870 3.130 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.270 1.270 19 N -0.515 5.515 20 C 0.053 3.947 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.013 0.987 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -1.991 10.964 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 H 0.041 0.959 4 C -0.139 4.139 5 C -0.061 4.061 6 N -0.276 5.276 7 C -0.116 4.116 8 C -0.040 4.040 9 C 0.071 3.929 10 H 0.023 0.977 11 C -0.552 4.552 12 H 0.101 0.899 13 C -0.126 4.126 14 N -0.526 5.526 15 Si 0.698 3.302 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.196 1.196 19 N -0.240 5.240 20 C -0.094 4.094 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -2.653 -2.681 10.817 11.456 hybrid contribution 1.125 2.435 0.434 2.717 sum -1.528 -0.246 11.251 11.357 Atomic orbital electron populations 1.22094 0.95789 1.01865 1.01035 1.20594 0.94402 0.95285 0.92954 0.95932 1.20585 0.95123 1.02018 0.96127 1.21701 0.95674 0.93478 0.95208 1.60540 1.33370 1.30293 1.03386 1.22333 0.92052 0.98308 0.98873 1.22700 0.96222 0.98949 0.86080 1.19474 0.85984 0.91403 0.95998 0.97732 1.20991 1.47156 0.97614 0.89429 0.89906 1.25035 0.94802 0.98044 0.94736 1.69892 1.47391 1.26500 1.08852 0.86961 0.79234 0.83158 0.80836 1.20349 1.21271 1.19569 1.61830 1.03074 1.57313 1.01748 1.22146 0.93849 0.98636 0.94792 0.93553 0.92265 0.92125 0.90562 0.92908 0.92549 0.95158 0.96839 0.92447 0.91916 0.91003 0.96354 0.92476 0.89937 0.94366 0.96871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.01 37.16 0.30 -2.09 16 2 C 0.08 1.44 2.24 -70.31 -0.16 1.28 16 3 H 0.02 0.47 7.37 -51.93 -0.38 0.09 16 4 C -0.10 -1.67 4.84 -29.33 -0.14 -1.81 16 5 C 0.07 1.19 5.40 -4.58 -0.02 1.17 16 6 N -0.55 -10.40 4.40 -242.55 -1.07 -11.47 16 7 C 0.03 0.50 9.41 60.07 0.57 1.07 16 8 C 0.09 1.92 5.14 -2.62 -0.01 1.91 16 9 C 0.18 4.30 1.72 -69.80 -0.12 4.18 16 10 H 0.01 0.13 3.21 -51.93 -0.17 -0.04 16 11 C -0.51 -13.93 6.21 -34.44 -0.21 -14.14 16 12 H 0.08 2.45 7.49 -52.49 -0.39 2.06 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 15 Si 0.87 21.62 26.89 -169.99 -4.57 17.05 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.61 6.89 56.52 0.39 -6.22 16 19 N -0.51 -11.29 4.60 -232.73 -1.07 -12.36 16 20 C 0.05 1.17 7.35 60.07 0.44 1.61 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.96 6.23 -51.93 -0.32 0.64 16 23 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 24 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 25 H 0.05 0.75 8.13 -51.93 -0.42 0.32 16 26 H 0.06 0.83 7.44 -51.93 -0.39 0.45 16 27 H 0.03 0.58 6.98 -51.93 -0.36 0.22 16 28 H 0.01 0.20 8.10 -51.93 -0.42 -0.22 16 29 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.63 7.97 -51.93 -0.41 1.22 16 32 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.08 1.98 6.26 -51.93 -0.32 1.66 16 35 H 0.04 0.72 6.21 -51.93 -0.32 0.40 16 36 H 0.01 0.30 8.05 -51.93 -0.42 -0.12 16 LS Contribution 266.85 15.07 4.02 4.02 Total: -1.00 -28.76 266.85 -7.37 -36.14 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.00 Total: -3.13 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 0.54 Total: -4.76 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -1.36 Total: -49.32 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.57 Total: 17.05 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.76 -7.37 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251720238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.624 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds