Wall clock time and date at job start Mon Mar 30 2020 02:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 108.91659 * 2 1 4 4 C 1.46138 * 108.93474 * 118.69961 * 2 1 3 5 5 C 1.54253 * 111.90090 * 181.56578 * 4 2 1 6 6 N 1.44255 * 108.64347 * 281.39780 * 5 4 2 7 7 C 1.46905 * 110.99739 * 219.84935 * 6 5 4 8 8 C 1.48197 * 114.27325 * 93.39401 * 6 5 4 9 9 C 1.53928 * 112.77313 * 318.13017 * 8 6 5 10 10 H 1.09004 * 108.86935 * 79.07503 * 9 8 6 11 11 C 1.50697 * 108.86671 * 197.58845 * 9 8 6 12 12 H 1.08002 * 119.99878 * 62.77701 * 11 9 8 13 13 C 1.37874 * 120.00792 * 242.78255 * 11 9 8 14 14 N 1.31509 * 120.00414 * 189.00535 * 13 11 9 15 15 Si 1.86805 * 119.99452 * 8.99923 * 13 11 9 16 16 H 1.48501 * 109.47042 * 275.21279 * 15 13 11 17 17 H 1.48502 * 109.46912 * 155.21611 * 15 13 11 18 18 H 1.48500 * 109.47125 * 35.21884 * 15 13 11 19 19 N 1.44249 * 112.55114 * 318.38414 * 9 8 6 20 20 C 1.46902 * 111.00314 * 217.13506 * 19 9 8 21 21 H 1.08994 * 109.47583 * 301.29863 * 1 2 3 22 22 H 1.08999 * 109.46929 * 61.29950 * 1 2 3 23 23 H 1.09007 * 109.46966 * 181.29409 * 1 2 3 24 24 H 1.09004 * 108.99170 * 60.94692 * 4 2 1 25 25 H 1.09001 * 108.93010 * 302.15053 * 4 2 1 26 26 H 1.09000 * 109.60778 * 161.64523 * 5 4 2 27 27 H 1.09004 * 109.75069 * 41.22940 * 5 4 2 28 28 H 1.09004 * 109.46848 * 291.75367 * 7 6 5 29 29 H 1.08997 * 109.47107 * 51.75025 * 7 6 5 30 30 H 1.08998 * 109.46571 * 171.75743 * 7 6 5 31 31 H 1.08999 * 108.81702 * 197.28272 * 8 6 5 32 32 H 1.08994 * 108.73475 * 78.92433 * 8 6 5 33 33 H 0.97005 * 120.00212 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.47368 * 58.24236 * 20 19 9 35 35 H 1.09003 * 109.47802 * 178.24816 * 20 19 9 36 36 H 1.09007 * 109.47080 * 298.24823 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8834 1.0311 0.0000 4 6 2.0042 -0.6638 1.2125 5 6 3.5441 -0.6679 1.3014 6 7 4.0531 -1.7063 0.4391 7 6 5.1829 -2.4049 1.0666 8 6 4.4041 -1.2474 -0.9256 9 6 3.3679 -0.2711 -1.5108 10 1 3.5373 0.7187 -1.0868 11 6 3.5553 -0.1992 -3.0043 12 1 3.4085 -1.0812 -3.6101 13 6 3.9143 0.9925 -3.5977 14 7 3.9058 1.1035 -4.9080 15 14 4.4126 2.4494 -2.5400 16 1 3.1978 3.1879 -2.1108 17 1 5.2901 3.3541 -3.3254 18 1 5.1460 1.9645 -1.3432 19 7 2.0107 -0.6709 -1.2297 20 6 1.1292 -0.3785 -2.3678 21 1 -0.3634 0.5338 0.8780 22 1 -0.3633 0.4935 -0.9014 23 1 -0.3633 -1.0275 0.0232 24 1 1.6459 -1.6933 1.2166 25 1 1.6000 -0.1442 2.0812 26 1 3.8507 -0.8628 2.3291 27 1 3.9342 0.2980 0.9804 28 1 6.0358 -1.7294 1.1335 29 1 4.8982 -2.7309 2.0669 30 1 5.4530 -3.2725 0.4646 31 1 4.4783 -2.1156 -1.5803 32 1 5.3738 -0.7510 -0.8893 33 1 4.1588 1.9418 -5.3254 34 1 1.4963 -0.8960 -3.2541 35 1 0.1184 -0.7180 -2.1413 36 1 1.1187 0.6958 -2.5527 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251720238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:29 Heat of formation + Delta-G solvation = 2.274562 kcal Electronic energy + Delta-G solvation = -15606.932178 eV Core-core repulsion = 13318.717885 eV Total energy + Delta-G solvation = -2288.214293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60059 -37.20191 -35.59821 -33.66089 -30.89593 -29.43958 -27.54579 -26.77520 -24.63958 -23.35668 -21.05897 -20.46046 -19.06752 -17.29483 -16.92027 -16.02666 -15.98656 -15.82707 -14.89568 -14.75572 -14.41552 -13.92776 -13.92290 -13.42480 -13.17827 -13.05372 -12.84131 -12.67867 -12.51330 -12.24313 -12.02549 -11.96870 -11.62061 -11.47559 -11.23488 -11.04017 -10.74535 -9.02263 -8.80658 -8.38518 -6.38411 1.18477 1.22174 1.30555 2.21200 2.84311 3.20010 3.38704 3.97524 4.11047 4.32790 4.35483 4.42406 4.50911 4.53956 4.68388 4.73208 4.77326 4.87206 4.92221 4.95377 4.97986 5.04171 5.10726 5.19943 5.33348 5.39766 5.43968 5.50726 5.61201 6.09334 6.26709 6.49796 6.50419 6.71070 6.81005 7.25590 8.77684 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026384 B = 0.014399 C = 0.011683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.979782 B = 1944.167673 C = 2396.065947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.005 0.995 4 C -0.097 4.097 5 C 0.063 3.937 6 N -0.559 5.559 7 C 0.032 3.968 8 C 0.096 3.904 9 C 0.185 3.815 10 H -0.005 1.005 11 C -0.507 4.507 12 H 0.044 0.956 13 C 0.028 3.972 14 N -0.932 5.932 15 Si 0.927 3.073 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.263 1.263 19 N -0.521 5.521 20 C 0.065 3.935 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.008 0.992 28 H 0.016 0.984 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.009 0.991 33 H 0.267 0.733 34 H 0.049 0.951 35 H 0.072 0.928 36 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -1.896 14.059 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 H 0.022 0.978 4 C -0.135 4.135 5 C -0.065 4.065 6 N -0.283 5.283 7 C -0.116 4.116 8 C -0.032 4.032 9 C 0.076 3.924 10 H 0.013 0.987 11 C -0.547 4.547 12 H 0.062 0.938 13 C -0.171 4.171 14 N -0.572 5.572 15 Si 0.752 3.248 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.188 1.188 19 N -0.245 5.245 20 C -0.083 4.083 21 H 0.095 0.905 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -3.261 -2.598 13.937 14.547 hybrid contribution 1.273 2.316 -0.516 2.692 sum -1.988 -0.282 13.421 13.570 Atomic orbital electron populations 1.22039 0.93197 1.02817 1.02117 1.20804 0.96668 0.94158 0.92168 0.97752 1.20594 0.94636 1.02163 0.96103 1.21861 0.96179 0.91930 0.96545 1.60503 1.34867 1.30663 1.02287 1.22435 0.91070 0.97961 1.00124 1.22367 0.94979 0.97561 0.88288 1.19367 0.87766 0.91658 0.93590 0.98718 1.21087 1.46182 0.96158 0.91227 0.93809 1.25704 0.95076 1.00686 0.95682 1.70012 1.49219 1.27428 1.10513 0.86045 0.79115 0.80133 0.79470 1.19846 1.20535 1.18804 1.61837 1.02066 1.57718 1.02914 1.22008 0.95569 0.96798 0.93943 0.90528 0.93148 0.91251 0.90525 0.89358 0.89076 0.97312 0.96589 0.89436 0.91768 0.92709 0.97304 0.92332 0.93253 0.90920 0.98967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.01 71.98 0.58 -3.52 16 2 C 0.07 2.48 2.24 42.57 0.10 2.57 16 3 H 0.00 0.18 7.37 -2.39 -0.02 0.16 16 4 C -0.10 -2.86 4.84 28.91 0.14 -2.72 16 5 C 0.06 2.01 5.40 87.22 0.47 2.48 16 6 N -0.56 -19.88 4.40 -921.28 -4.05 -23.94 16 7 C 0.03 0.89 9.41 127.69 1.20 2.09 16 8 C 0.10 4.21 5.14 86.37 0.44 4.66 16 9 C 0.18 8.92 1.72 44.98 0.08 9.00 16 10 H 0.00 -0.23 3.21 -2.38 -0.01 -0.24 16 11 C -0.51 -28.65 6.21 25.60 0.16 -28.49 16 12 H 0.04 2.76 7.49 -2.91 -0.02 2.74 16 13 C 0.03 1.62 5.47 84.65 0.46 2.08 16 14 N -0.93 -57.03 13.96 21.45 0.30 -56.73 16 15 Si 0.93 45.12 26.89 68.60 1.84 46.97 16 16 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 18 H -0.26 -12.41 6.89 99.48 0.69 -11.72 16 19 N -0.52 -22.59 4.60 -890.21 -4.09 -26.68 16 20 C 0.06 2.86 7.35 127.69 0.94 3.80 16 21 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.05 1.51 6.23 -2.39 -0.01 1.49 16 23 H 0.07 1.86 8.13 -2.38 -0.02 1.84 16 24 H 0.08 2.31 8.12 -2.38 -0.02 2.29 16 25 H 0.09 2.03 8.13 -2.39 -0.02 2.01 16 26 H 0.09 2.26 7.44 -2.39 -0.02 2.24 16 27 H 0.01 0.31 6.98 -2.38 -0.02 0.29 16 28 H 0.02 0.44 8.10 -2.39 -0.02 0.42 16 29 H 0.09 1.94 7.84 -2.39 -0.02 1.92 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 2.54 7.97 -2.39 -0.02 2.52 16 32 H 0.01 0.40 8.01 -2.39 -0.02 0.38 16 33 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 34 H 0.05 2.47 6.26 -2.39 -0.01 2.46 16 35 H 0.07 2.67 6.21 -2.39 -0.01 2.65 16 36 H -0.01 -0.40 8.05 -2.38 -0.02 -0.42 16 Total: -1.00 -63.72 266.85 -0.43 -64.15 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.01 Total: 4.29 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.57 Total: -8.05 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -7.85 Total: -107.35 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.84 Total: 46.97 kcal Total: -63.72 -0.43 -64.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251720238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.421 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds