Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47439 * 2 1 4 4 C 1.50701 * 109.46836 * 240.00425 * 2 1 3 5 5 H 1.08001 * 120.00280 * 245.55527 * 4 2 1 6 6 C 1.37883 * 120.00197 * 65.55237 * 4 2 1 7 7 N 1.31507 * 120.00176 * 196.50188 * 6 4 2 8 8 Si 1.86801 * 119.99832 * 16.77703 * 6 4 2 9 9 H 1.48495 * 109.47373 * 179.72658 * 8 6 4 10 10 H 1.48508 * 109.46975 * 299.72450 * 8 6 4 11 11 H 1.48497 * 109.46999 * 59.72223 * 8 6 4 12 12 N 1.46898 * 109.47468 * 120.00357 * 2 1 3 13 13 C 1.46954 * 111.00227 * 171.19515 * 12 2 1 14 14 C 1.53048 * 109.36603 * 183.18810 * 13 12 2 15 15 H 1.08999 * 109.48871 * 61.57447 * 14 13 12 16 16 C 1.53002 * 109.50720 * 181.62261 * 14 13 12 17 17 N 1.46955 * 109.36481 * 301.60003 * 14 13 12 18 18 C 1.46958 * 110.87602 * 59.32139 * 17 14 13 19 19 H 1.09000 * 109.48688 * 180.70771 * 18 17 14 20 20 C 1.53000 * 109.50850 * 60.65749 * 18 17 14 21 21 C 1.46956 * 110.99933 * 295.00026 * 12 2 1 22 22 H 1.09006 * 109.47045 * 307.13142 * 1 2 3 23 23 H 1.08996 * 109.47331 * 67.12883 * 1 2 3 24 24 H 1.09003 * 109.47464 * 187.13265 * 1 2 3 25 25 H 0.97005 * 120.00109 * 356.11644 * 7 6 4 26 26 H 1.09000 * 109.49135 * 303.16117 * 13 12 2 27 27 H 1.09000 * 109.48537 * 63.22366 * 13 12 2 28 28 H 1.09000 * 109.47416 * 179.90381 * 16 14 13 29 29 H 1.09001 * 109.47094 * 299.90278 * 16 14 13 30 30 H 1.09003 * 109.46941 * 59.90105 * 16 14 13 31 31 H 1.00895 * 111.00261 * 295.45368 * 17 14 13 32 32 H 1.08999 * 109.47466 * 300.09710 * 20 18 17 33 33 H 1.09000 * 109.47237 * 60.09226 * 20 18 17 34 34 H 1.09002 * 109.47393 * 180.09262 * 20 18 17 35 35 H 1.09002 * 109.48510 * 296.77591 * 21 12 2 36 36 H 1.09001 * 109.48760 * 56.84479 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.5771 -1.6378 -1.1341 6 6 1.7961 -0.1762 -2.4796 7 7 1.9340 -0.9251 -3.5518 8 14 1.2877 1.6132 -2.6493 9 1 1.1025 1.9412 -4.0857 10 1 0.0122 1.8365 -1.9222 11 1 2.3440 2.4845 -2.0747 12 7 2.0197 -0.6925 1.1993 13 6 3.4735 -0.8967 1.1329 14 6 3.9313 -1.6891 2.3597 15 1 3.4495 -2.6668 2.3616 16 6 5.4500 -1.8686 2.3143 17 7 3.5603 -0.9572 3.5788 18 6 2.1064 -0.7532 3.6452 19 1 1.8580 -0.1984 4.5499 20 6 1.4006 -2.1104 3.6687 21 6 1.6486 0.0393 2.4185 22 1 -0.3633 0.6204 0.8194 23 1 -0.3634 0.3994 -0.9468 24 1 -0.3634 -1.0197 0.1276 25 1 2.2561 -1.8364 -3.4688 26 1 3.7219 -1.4514 0.2281 27 1 3.9761 0.0704 1.1164 28 1 5.7757 -2.4315 3.1891 29 1 5.7249 -2.4115 1.4100 30 1 5.9316 -0.8907 2.3116 31 1 4.0518 -0.0780 3.6364 32 1 1.6497 -2.6653 2.7642 33 1 1.7268 -2.6745 4.5424 34 1 0.3222 -1.9584 3.7162 35 1 2.1305 1.0170 2.4165 36 1 0.5666 0.1668 2.4509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251772091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -19.304961 kcal Electronic energy + Delta-G solvation = -15312.312110 eV Core-core repulsion = 13023.162059 eV Total energy + Delta-G solvation = -2289.150052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70196 -36.95436 -34.48306 -33.97401 -31.33172 -29.17285 -28.13573 -26.37019 -25.06178 -22.84192 -21.35672 -20.27003 -19.58476 -17.33978 -16.38474 -16.06795 -15.84151 -15.68549 -15.45165 -14.79722 -14.15530 -13.96306 -13.81238 -13.32165 -13.21427 -13.09061 -12.71222 -12.48858 -12.43461 -12.27016 -12.08955 -11.88847 -11.83614 -11.57438 -11.41869 -10.87926 -10.46239 -9.40492 -8.99286 -8.76770 -6.36129 1.39928 1.46134 1.65905 2.43674 3.01775 3.08823 3.28841 4.00227 4.09708 4.14315 4.18560 4.30829 4.47350 4.52621 4.62580 4.70058 4.76779 4.77369 4.80572 4.90299 4.99001 5.05590 5.11048 5.16939 5.25824 5.27948 5.47849 5.52009 5.80359 6.00767 6.05855 6.19008 6.49069 6.57209 6.70527 7.40494 8.62961 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036908 B = 0.010329 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.469829 B = 2710.272327 C = 3059.601182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.187 3.813 3 H -0.018 1.018 4 C -0.588 4.588 5 H 0.027 0.973 6 C -0.021 4.021 7 N -0.938 5.938 8 Si 1.082 2.918 9 H -0.287 1.287 10 H -0.242 1.242 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.041 3.959 14 C 0.090 3.910 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.669 5.669 18 C 0.090 3.910 19 H 0.106 0.894 20 C -0.129 4.129 21 C 0.016 3.984 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.251 0.749 26 H 0.053 0.947 27 H 0.009 0.991 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.341 0.659 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.156 2.743 14.964 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 H -0.001 1.001 4 C -0.626 4.626 5 H 0.045 0.955 6 C -0.219 4.219 7 N -0.575 5.575 8 Si 0.904 3.096 9 H -0.214 1.214 10 H -0.166 1.166 11 H -0.200 1.200 12 N -0.253 5.253 13 C -0.089 4.089 14 C -0.021 4.021 15 H 0.094 0.906 16 C -0.193 4.193 17 N -0.299 5.299 18 C -0.020 4.020 19 H 0.124 0.876 20 C -0.187 4.187 21 C -0.114 4.114 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.027 0.973 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.468 2.839 14.298 14.584 hybrid contribution 0.892 -0.067 -0.418 0.987 sum 1.360 2.773 13.880 14.219 Atomic orbital electron populations 1.22064 0.96485 1.00603 1.00123 1.19464 0.93093 0.91092 0.88484 1.00061 1.22166 1.39045 1.08774 0.92615 0.95506 1.27058 0.94719 1.08194 0.91920 1.70983 1.44656 1.09545 1.32299 0.83590 0.78616 0.71030 0.76356 1.21353 1.16635 1.19953 1.62029 1.12372 1.48969 1.01953 1.22652 0.88313 0.97997 0.99893 1.21594 0.96565 0.97426 0.86496 0.90567 1.21706 0.93006 1.02216 1.02374 1.60950 1.06432 1.25370 1.37144 1.21689 0.87561 0.96965 0.95828 0.87593 1.21644 0.99597 0.96056 1.01354 1.23010 1.01743 0.94747 0.91911 0.92822 0.93452 0.93730 0.93955 0.92898 0.97263 0.90374 0.92625 0.92431 0.84165 0.93922 0.91796 0.92046 0.96263 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.57 71.98 0.62 -5.20 16 2 C 0.19 8.89 1.65 44.17 0.07 8.96 16 3 H -0.02 -0.87 6.80 -2.39 -0.02 -0.89 16 4 C -0.59 -33.60 8.03 25.60 0.21 -33.40 16 5 H 0.03 1.70 6.54 -2.91 -0.02 1.68 16 6 C -0.02 -1.21 5.30 84.66 0.45 -0.76 16 7 N -0.94 -59.31 13.70 21.45 0.29 -59.02 16 8 Si 1.08 50.54 26.26 68.60 1.80 52.34 16 9 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.24 -10.00 5.74 99.48 0.57 -9.43 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.53 -21.81 3.89 -874.90 -3.40 -25.21 16 13 C 0.04 1.66 4.54 86.31 0.39 2.05 16 14 C 0.09 2.79 2.82 44.92 0.13 2.91 16 15 H 0.08 2.58 6.35 -2.39 -0.02 2.57 16 16 C -0.13 -3.48 9.45 71.98 0.68 -2.80 16 17 N -0.67 -17.80 6.35 -469.05 -2.98 -20.78 16 18 C 0.09 2.37 3.69 44.92 0.17 2.54 16 19 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 20 C -0.13 -3.47 8.84 71.98 0.64 -2.83 16 21 C 0.02 0.51 4.82 86.31 0.42 0.92 16 22 H 0.05 1.93 6.82 -2.38 -0.02 1.91 16 23 H 0.05 2.10 4.81 -2.39 -0.01 2.09 16 24 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.25 16.18 8.73 -92.70 -0.81 15.37 16 26 H 0.05 2.51 5.96 -2.39 -0.01 2.49 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.34 8.34 8.80 -89.70 -0.79 7.55 16 32 H 0.04 1.39 5.94 -2.39 -0.01 1.38 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 2.53 6.45 -2.39 -0.02 2.52 16 Total: -1.00 -64.09 268.32 -0.43 -64.53 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.09 Total: 15.75 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 3.76 Total: -27.61 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -6.09 Total: -105.01 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.80 Total: 52.34 kcal Total: -64.09 -0.43 -64.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251772091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.222 kcal (2) G-P(sol) polarization free energy of solvation -64.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds