Wall clock time and date at job start Mon Mar 30 2020 02:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46572 * 2 1 4 4 N 1.46889 * 109.47655 * 119.99928 * 2 1 3 5 5 C 1.46961 * 111.00138 * 62.75654 * 4 2 1 6 6 C 1.53050 * 109.36522 * 176.81241 * 5 4 2 7 7 H 1.08998 * 109.48474 * 178.39084 * 6 5 4 8 8 C 1.52998 * 109.48909 * 298.42847 * 6 5 4 9 9 N 1.46949 * 109.36629 * 58.40332 * 6 5 4 10 10 C 1.46956 * 110.87975 * 300.67474 * 9 6 5 11 11 H 1.09000 * 109.51264 * 299.34555 * 10 9 6 12 12 C 1.50699 * 109.49115 * 179.28703 * 10 9 6 13 13 H 1.08002 * 120.00516 * 240.10759 * 12 10 9 14 14 C 1.37884 * 119.99783 * 60.11059 * 12 10 9 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 10 17 17 H 1.48497 * 109.47172 * 179.72730 * 16 14 12 18 18 H 1.48506 * 109.47132 * 299.72429 * 16 14 12 19 19 H 1.48501 * 109.47173 * 59.72550 * 16 14 12 20 20 C 1.46959 * 111.00260 * 298.95506 * 4 2 1 21 21 H 1.08999 * 109.47425 * 59.99933 * 1 2 3 22 22 H 1.09007 * 109.46745 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47112 * 299.99100 * 1 2 3 24 24 H 1.08997 * 109.47252 * 240.00655 * 2 1 3 25 25 H 1.09001 * 109.46963 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47300 * 300.00144 * 3 2 1 27 27 H 1.08997 * 109.47267 * 60.00627 * 3 2 1 28 28 H 1.09000 * 109.48277 * 296.78100 * 5 4 2 29 29 H 1.09001 * 109.48640 * 56.82220 * 5 4 2 30 30 H 1.09004 * 109.47039 * 60.00632 * 8 6 5 31 31 H 1.08997 * 109.47181 * 180.02562 * 8 6 5 32 32 H 1.08997 * 109.47579 * 300.00275 * 8 6 5 33 33 H 1.00899 * 111.00303 * 176.81345 * 9 6 5 34 34 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.48859 * 63.22044 * 20 4 2 36 36 H 1.08998 * 109.50906 * 303.16524 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1993 5 6 1.6032 -2.1018 1.2008 6 6 2.1985 -2.8055 2.4226 7 1 1.8675 -3.8439 2.4412 8 6 3.7257 -2.7580 2.3454 9 7 1.7478 -2.1250 3.6446 10 6 2.1644 -0.7157 3.6432 11 1 3.2521 -0.6576 3.6023 12 6 1.6720 -0.0446 4.8994 13 1 1.0016 0.7996 4.8336 14 6 2.0774 -0.5083 6.1330 15 7 2.8942 -1.5359 6.2133 16 14 1.4610 0.3187 7.6904 17 1 2.0345 -0.3678 8.8757 18 1 1.8795 1.7436 7.6931 19 1 -0.0210 0.2380 7.7405 20 6 1.5692 -0.0118 2.4214 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5137 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 3.1299 1.4427 -0.0005 26 1 1.6765 1.9564 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 0.5155 -2.1593 1.2419 29 1 1.9591 -2.5870 0.2920 30 1 4.0565 -1.7195 2.3276 31 1 4.1493 -3.2597 3.2154 32 1 4.0596 -3.2612 1.4380 33 1 2.0842 -2.6006 4.4684 34 1 3.1797 -1.8619 7.0811 35 1 0.4811 -0.0457 2.4764 36 1 1.9002 1.0266 2.4028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251772176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:22 Heat of formation + Delta-G solvation = 1.224453 kcal Electronic energy + Delta-G solvation = -15364.541029 eV Core-core repulsion = 13076.281200 eV Total energy + Delta-G solvation = -2288.259829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.91132 -35.40929 -32.89409 -30.49437 -30.08317 -27.13195 -26.38530 -25.17834 -23.89342 -21.29156 -19.76078 -17.57680 -16.68377 -15.43703 -14.56733 -14.45134 -14.11053 -13.76711 -13.61170 -13.46150 -12.57109 -12.39578 -12.18533 -11.80022 -11.55284 -11.17404 -11.02600 -10.91930 -10.87917 -10.68424 -10.56692 -10.30044 -10.20055 -9.64973 -9.31468 -9.04831 -8.53199 -7.56143 -6.76185 -6.05801 -4.08092 3.32977 3.37338 3.40311 4.40295 4.61140 5.19394 5.22612 5.41148 5.58089 5.70561 5.80125 5.85657 5.97795 6.02893 6.03763 6.16271 6.22423 6.28786 6.43306 6.44500 6.47812 6.56208 6.68270 6.78233 6.82996 7.02966 7.16962 7.59073 7.79359 7.82302 7.97104 8.27541 8.72096 9.04214 9.18564 9.59060 11.04458 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034273 B = 0.010384 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.782207 B = 2695.836031 C = 3182.532286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 C -0.144 4.144 4 N -0.532 5.532 5 C 0.068 3.932 6 C 0.078 3.922 7 H 0.060 0.940 8 C -0.168 4.168 9 N -0.681 5.681 10 C 0.217 3.783 11 H 0.010 0.990 12 C -0.506 4.506 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.288 1.288 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.065 3.935 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.362 0.638 34 H 0.263 0.737 35 H 0.030 0.970 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 0.646 -9.685 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 C -0.201 4.201 4 N -0.256 5.256 5 C -0.061 4.061 6 C -0.033 4.033 7 H 0.078 0.922 8 C -0.227 4.227 9 N -0.317 5.317 10 C 0.109 3.891 11 H 0.027 0.973 12 C -0.545 4.545 13 H 0.075 0.925 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.214 1.214 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.063 4.063 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.186 0.814 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.640 0.679 -9.785 9.945 hybrid contribution -0.259 0.206 1.042 1.093 sum -1.899 0.886 -8.744 8.991 Atomic orbital electron populations 1.22467 0.98284 1.01813 1.01829 1.21646 0.92323 0.95301 0.94163 1.21856 1.01635 0.95365 1.01260 1.62452 1.58991 1.01979 1.02175 1.22073 0.97587 0.88920 0.97473 1.21529 0.92586 0.96537 0.92656 0.92196 1.22333 0.98199 1.02743 0.99395 1.61164 1.62581 1.04806 1.03167 1.19051 0.94017 0.85240 0.90749 0.97252 1.21100 1.28626 1.14391 0.90413 0.92485 1.24960 0.94412 0.94933 0.99089 1.69678 1.34010 1.25251 1.24961 0.86577 0.79150 0.79404 0.82321 1.21367 1.20371 1.20252 1.22389 0.97570 0.97415 0.88914 0.93029 0.92711 0.92066 0.91111 0.92140 0.93102 0.92190 0.94804 0.92385 0.91244 0.93690 0.94657 0.81388 0.92668 0.95178 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 8.50 37.16 0.32 -2.37 16 2 C 0.07 1.15 2.99 -67.72 -0.20 0.95 16 3 C -0.14 -2.04 8.93 37.16 0.33 -1.70 16 4 N -0.53 -9.98 4.03 -226.49 -0.91 -10.89 16 5 C 0.07 1.25 4.63 -3.76 -0.02 1.23 16 6 C 0.08 1.60 3.70 -67.66 -0.25 1.35 16 7 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 8 C -0.17 -3.34 8.83 37.16 0.33 -3.01 16 9 N -0.68 -16.57 6.32 -100.82 -0.64 -17.21 16 10 C 0.22 5.51 2.17 -68.81 -0.15 5.36 16 11 H 0.01 0.28 6.35 -51.93 -0.33 -0.05 16 12 C -0.51 -13.93 8.76 -34.44 -0.30 -14.23 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.85 5.34 -17.82 -0.10 1.76 16 15 N -0.90 -25.21 11.50 55.43 0.64 -24.58 16 16 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.06 1.40 4.05 -3.76 -0.02 1.38 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.81 6.53 -51.92 -0.34 0.47 16 23 H 0.06 0.98 6.50 -51.93 -0.34 0.64 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.91 6.32 -51.93 -0.33 0.58 16 28 H 0.03 0.64 6.54 -51.93 -0.34 0.30 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.52 5.94 -51.93 -0.31 1.22 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.36 9.57 6.71 -39.29 -0.26 9.31 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.03 0.68 6.50 -51.93 -0.34 0.34 16 36 H 0.06 1.36 6.12 -51.93 -0.32 1.04 16 LS Contribution 269.31 15.07 4.06 4.06 Total: -1.00 -27.45 269.31 -7.76 -35.21 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.82 Total: 6.42 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.06 Total: -9.28 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.91 Total: -52.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.45 -7.76 -35.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251772176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.433 kcal (2) G-P(sol) polarization free energy of solvation -27.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds