Wall clock time and date at job start Mon Mar 30 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46896 * 109.47053 * 240.00416 * 2 1 3 5 5 C 1.46958 * 111.00600 * 66.04069 * 4 2 1 6 6 C 1.53047 * 109.36896 * 183.18938 * 5 4 2 7 7 H 1.08997 * 109.48880 * 61.56225 * 6 5 4 8 8 C 1.50701 * 109.49032 * 181.61156 * 6 5 4 9 9 H 1.08000 * 119.99468 * 0.02562 * 8 6 5 10 10 C 1.37867 * 119.99932 * 180.02562 * 8 6 5 11 11 N 1.31517 * 120.00244 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 119.99877 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47185 * 90.00278 * 12 10 8 14 14 H 1.48498 * 109.47064 * 209.99871 * 12 10 8 15 15 H 1.48500 * 109.47223 * 330.00111 * 12 10 8 16 16 N 1.46955 * 109.36223 * 301.60156 * 6 5 4 17 17 C 1.46958 * 110.88383 * 59.31910 * 16 6 5 18 18 H 1.09002 * 109.48616 * 60.66937 * 17 16 6 19 19 C 1.53004 * 109.49040 * 180.71153 * 17 16 6 20 20 C 1.46960 * 111.00057 * 189.84524 * 4 2 1 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.09000 * 109.48638 * 303.15985 * 5 4 2 29 29 H 1.09008 * 109.48479 * 63.21761 * 5 4 2 30 30 H 0.96998 * 119.99812 * 179.97438 * 11 10 8 31 31 H 1.00907 * 111.00230 * 295.45283 * 16 6 5 32 32 H 1.08997 * 109.47248 * 59.99730 * 19 17 16 33 33 H 1.08994 * 109.46681 * 180.02562 * 19 17 16 34 34 H 1.08999 * 109.46961 * 300.00179 * 19 17 16 35 35 H 1.09006 * 109.48477 * 296.77307 * 20 4 2 36 36 H 1.08996 * 109.49071 * 56.84257 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.6700 0.0523 -2.4172 6 6 2.1264 -0.7394 -3.6449 7 1 1.6098 -1.6988 -3.6717 8 6 1.8047 0.0400 -4.8939 9 1 1.3232 1.0039 -4.8198 10 6 2.1250 -0.4774 -6.1310 11 7 2.7118 -1.6509 -6.2212 12 14 1.7256 0.4885 -7.6793 13 1 2.8727 1.3659 -8.0251 14 1 1.4683 -0.4537 -8.7979 15 1 0.5183 1.3210 -7.4457 16 7 3.5764 -0.9655 -3.5674 17 6 3.9261 -1.7102 -2.3497 18 1 3.4302 -2.6808 -2.3620 19 6 5.4417 -1.9121 -2.2923 20 6 3.4697 -0.9185 -1.1220 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 0.5903 0.1961 -2.4580 29 1 2.1662 1.0227 -2.4050 30 1 2.9368 -2.0151 -7.0916 31 1 4.0815 -0.0933 -3.6153 32 1 5.9373 -0.9414 -2.2794 33 1 5.7006 -2.4648 -1.3893 34 1 5.7667 -2.4742 -3.1678 35 1 3.9864 0.0409 -1.0952 36 1 3.7020 -1.4825 -0.2187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251772177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:25 Heat of formation + Delta-G solvation = 1.350368 kcal Electronic energy + Delta-G solvation = -15204.229878 eV Core-core repulsion = 12915.975509 eV Total energy + Delta-G solvation = -2288.254369 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94648 -35.32701 -32.96274 -30.88333 -30.11093 -27.05251 -26.55089 -25.11614 -23.63864 -20.91215 -19.83239 -18.81123 -16.37075 -15.38809 -14.62316 -14.29675 -14.25337 -14.16320 -13.43896 -13.08860 -12.88812 -12.42729 -11.94999 -11.90840 -11.65124 -11.42858 -11.17192 -10.89098 -10.85950 -10.66878 -10.58278 -10.40425 -10.16625 -9.92441 -9.58140 -8.86486 -8.36524 -7.70662 -6.70484 -5.83063 -3.97782 3.35839 3.42963 3.45297 4.40378 4.56988 5.15243 5.26271 5.35648 5.53129 5.60704 5.69104 5.78841 5.85464 5.93162 5.99122 6.07045 6.11446 6.17529 6.22314 6.29673 6.42147 6.44168 6.55959 6.56883 6.77078 6.95056 6.97504 7.47253 7.75296 7.82285 7.97592 8.29600 8.67546 9.01400 9.18529 9.70647 11.21142 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030238 B = 0.010464 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.774383 B = 2675.304363 C = 3311.608938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 C -0.184 4.184 4 N -0.531 5.531 5 C 0.026 3.974 6 C 0.227 3.773 7 H 0.044 0.956 8 C -0.539 4.539 9 H 0.052 0.948 10 C 0.084 3.916 11 N -0.845 5.845 12 Si 0.882 3.118 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.276 1.276 16 N -0.642 5.642 17 C 0.082 3.918 18 H 0.075 0.925 19 C -0.137 4.137 20 C 0.026 3.974 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.255 0.745 31 H 0.316 0.684 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 2.451 10.403 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.243 4.243 4 N -0.255 5.255 5 C -0.103 4.103 6 C 0.119 3.881 7 H 0.062 0.938 8 C -0.578 4.578 9 H 0.070 0.930 10 C -0.123 4.123 11 N -0.479 5.479 12 Si 0.710 3.290 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.201 1.201 16 N -0.271 5.271 17 C -0.030 4.030 18 H 0.093 0.907 19 C -0.195 4.195 20 C -0.105 4.105 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.489 1.252 9.836 9.927 hybrid contribution 0.136 2.107 -0.050 2.112 sum 0.625 3.359 9.786 10.365 Atomic orbital electron populations 1.21804 0.94726 1.02157 1.01153 1.21674 0.95693 0.92127 0.94011 1.22459 1.01093 0.98813 1.01965 1.62409 1.13145 1.47828 1.02078 1.23141 1.00453 0.95597 0.91088 1.19146 0.84475 0.95254 0.89210 0.93765 1.20904 1.41630 1.04871 0.90392 0.92977 1.24934 0.94278 0.94592 0.98450 1.70117 1.38191 1.16257 1.23337 0.86796 0.78591 0.80029 0.83619 1.20838 1.21331 1.20101 1.61144 1.09170 1.24007 1.32735 1.21622 0.94285 0.98567 0.88516 0.90660 1.21727 0.95970 1.00819 1.00966 1.22937 0.88270 0.98761 1.00508 0.92082 0.93120 0.92329 0.91187 0.92908 0.93053 0.91966 0.91559 0.95966 0.93495 0.86751 0.93763 0.93649 0.91803 0.95885 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.12 37.16 0.34 -1.66 16 2 C 0.07 1.14 2.92 -67.72 -0.20 0.94 16 3 C -0.18 -2.66 8.44 37.16 0.31 -2.35 16 4 N -0.53 -9.90 4.66 -226.49 -1.06 -10.96 16 5 C 0.03 0.56 3.96 -3.77 -0.01 0.54 16 6 C 0.23 5.70 2.45 -68.81 -0.17 5.54 16 7 H 0.04 1.27 8.14 -51.93 -0.42 0.84 16 8 C -0.54 -14.75 8.69 -34.44 -0.30 -15.05 16 9 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 10 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 11 N -0.84 -24.56 12.78 55.43 0.71 -23.85 16 12 Si 0.88 21.25 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 N -0.64 -15.18 5.53 -100.82 -0.56 -15.73 16 17 C 0.08 1.62 3.20 -67.66 -0.22 1.40 16 18 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 19 C -0.14 -2.28 9.45 37.16 0.35 -1.93 16 20 C 0.03 0.45 4.61 -3.77 -0.02 0.44 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.89 6.49 -51.93 -0.34 0.56 16 24 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.75 6.75 -51.93 -0.35 0.40 16 27 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 28 H 0.07 1.41 6.33 -51.93 -0.33 1.08 16 29 H 0.02 0.48 6.41 -51.92 -0.33 0.14 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.32 7.44 8.70 -39.29 -0.34 7.10 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.41 6.75 -51.93 -0.35 0.06 16 36 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 LS Contribution 277.18 15.07 4.18 4.18 Total: -1.00 -28.19 277.18 -7.89 -36.08 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.13 Total: 3.95 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.01 Total: -9.89 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.90 Total: -50.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.19 -7.89 -36.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251772177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.429 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds