Wall clock time and date at job start Mon Mar 30 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46896 * 109.47053 * 240.00416 * 2 1 3 5 5 C 1.46958 * 111.00600 * 66.04069 * 4 2 1 6 6 C 1.53047 * 109.36896 * 183.18938 * 5 4 2 7 7 H 1.08997 * 109.48880 * 61.56225 * 6 5 4 8 8 C 1.50701 * 109.49032 * 181.61156 * 6 5 4 9 9 H 1.08000 * 119.99468 * 0.02562 * 8 6 5 10 10 C 1.37867 * 119.99932 * 180.02562 * 8 6 5 11 11 N 1.31517 * 120.00244 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 119.99877 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47185 * 90.00278 * 12 10 8 14 14 H 1.48498 * 109.47064 * 209.99871 * 12 10 8 15 15 H 1.48500 * 109.47223 * 330.00111 * 12 10 8 16 16 N 1.46955 * 109.36223 * 301.60156 * 6 5 4 17 17 C 1.46958 * 110.88383 * 59.31910 * 16 6 5 18 18 H 1.09002 * 109.48616 * 60.66937 * 17 16 6 19 19 C 1.53004 * 109.49040 * 180.71153 * 17 16 6 20 20 C 1.46960 * 111.00057 * 189.84524 * 4 2 1 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.09000 * 109.48638 * 303.15985 * 5 4 2 29 29 H 1.09008 * 109.48479 * 63.21761 * 5 4 2 30 30 H 0.96998 * 119.99812 * 179.97438 * 11 10 8 31 31 H 1.00907 * 111.00230 * 295.45283 * 16 6 5 32 32 H 1.08997 * 109.47248 * 59.99730 * 19 17 16 33 33 H 1.08994 * 109.46681 * 180.02562 * 19 17 16 34 34 H 1.08999 * 109.46961 * 300.00179 * 19 17 16 35 35 H 1.09006 * 109.48477 * 296.77307 * 20 4 2 36 36 H 1.08996 * 109.49071 * 56.84257 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.6700 0.0523 -2.4172 6 6 2.1264 -0.7394 -3.6449 7 1 1.6098 -1.6988 -3.6717 8 6 1.8047 0.0400 -4.8939 9 1 1.3232 1.0039 -4.8198 10 6 2.1250 -0.4774 -6.1310 11 7 2.7118 -1.6509 -6.2212 12 14 1.7256 0.4885 -7.6793 13 1 2.8727 1.3659 -8.0251 14 1 1.4683 -0.4537 -8.7979 15 1 0.5183 1.3210 -7.4457 16 7 3.5764 -0.9655 -3.5674 17 6 3.9261 -1.7102 -2.3497 18 1 3.4302 -2.6808 -2.3620 19 6 5.4417 -1.9121 -2.2923 20 6 3.4697 -0.9185 -1.1220 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 0.5903 0.1961 -2.4580 29 1 2.1662 1.0227 -2.4050 30 1 2.9368 -2.0151 -7.0916 31 1 4.0815 -0.0933 -3.6153 32 1 5.9373 -0.9414 -2.2794 33 1 5.7006 -2.4648 -1.3893 34 1 5.7667 -2.4742 -3.1678 35 1 3.9864 0.0409 -1.0952 36 1 3.7020 -1.4825 -0.2187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251772177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:25 Heat of formation + Delta-G solvation = -18.596182 kcal Electronic energy + Delta-G solvation = -15205.094826 eV Core-core repulsion = 12915.975509 eV Total energy + Delta-G solvation = -2289.119317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49462 -36.85365 -34.90143 -32.63739 -31.63873 -28.34691 -28.08793 -26.99576 -25.15989 -22.71132 -21.37135 -20.33524 -18.39328 -16.95569 -16.29058 -16.00347 -15.79523 -15.70751 -14.97185 -14.74085 -14.30344 -13.92861 -13.61988 -13.25219 -13.05317 -12.85960 -12.73995 -12.68005 -12.49018 -12.28351 -11.98622 -11.92898 -11.76731 -11.49745 -11.46445 -10.85906 -10.50572 -9.19316 -8.49263 -7.95148 -6.17597 1.44353 1.45190 1.54704 2.47237 3.05913 3.24847 3.87527 3.94313 4.14679 4.21798 4.32980 4.39618 4.49805 4.53383 4.62543 4.73756 4.77130 4.81097 4.85408 4.96728 4.97277 5.02264 5.14175 5.28626 5.33552 5.39403 5.44028 5.57653 5.76560 6.15018 6.29926 6.37125 6.68288 7.15349 7.16537 7.55072 9.07946 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030238 B = 0.010464 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.774383 B = 2675.304363 C = 3311.608938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 C -0.177 4.177 4 N -0.545 5.545 5 C 0.047 3.953 6 C 0.230 3.770 7 H -0.003 1.003 8 C -0.555 4.555 9 H 0.050 0.950 10 C 0.036 3.964 11 N -0.878 5.878 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.270 1.270 16 N -0.661 5.661 17 C 0.079 3.921 18 H 0.049 0.951 19 C -0.126 4.126 20 C 0.034 3.966 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.255 0.745 31 H 0.315 0.685 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.028 0.972 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 3.471 11.911 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.038 4.038 3 C -0.236 4.236 4 N -0.269 5.269 5 C -0.083 4.083 6 C 0.121 3.879 7 H 0.015 0.985 8 C -0.594 4.594 9 H 0.068 0.932 10 C -0.168 4.168 11 N -0.514 5.514 12 Si 0.775 3.225 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.195 1.195 16 N -0.289 5.289 17 C -0.032 4.032 18 H 0.068 0.932 19 C -0.184 4.184 20 C -0.096 4.096 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.844 2.280 11.364 11.621 hybrid contribution 0.004 1.744 -0.450 1.801 sum 0.848 4.024 10.914 11.663 Atomic orbital electron populations 1.21791 0.93983 1.01969 1.01781 1.21838 0.96353 0.92733 0.92848 1.22379 1.00897 0.97981 1.02359 1.62357 1.13936 1.48261 1.02338 1.22694 0.99729 0.94823 0.91009 1.18863 0.85342 0.93102 0.90555 0.98482 1.21254 1.41468 1.04888 0.91779 0.93220 1.25672 0.94151 0.95466 1.01487 1.70258 1.39434 1.17781 1.23910 0.85739 0.78518 0.78614 0.79675 1.20266 1.21148 1.19497 1.60902 1.08171 1.24135 1.35699 1.21659 0.96308 0.97034 0.88220 0.93240 1.21629 0.93365 1.01609 1.01796 1.22826 0.87716 0.98859 1.00196 0.92709 0.90150 0.94004 0.89223 0.90229 0.93212 0.93820 0.92284 0.96201 0.93642 0.86865 0.92753 0.90491 0.93407 0.95345 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.12 71.98 0.66 -2.98 16 2 C 0.07 1.99 2.92 44.92 0.13 2.12 16 3 C -0.18 -4.64 8.44 71.98 0.61 -4.03 16 4 N -0.54 -19.78 4.66 -870.48 -4.06 -23.84 16 5 C 0.05 2.02 3.96 86.31 0.34 2.36 16 6 C 0.23 11.93 2.45 44.17 0.11 12.04 16 7 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 8 C -0.55 -31.09 8.69 25.60 0.22 -30.87 16 9 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 10 C 0.04 2.04 5.39 84.65 0.46 2.50 16 11 N -0.88 -52.35 12.78 21.44 0.27 -52.08 16 12 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 16 N -0.66 -31.86 5.53 -472.89 -2.61 -34.47 16 17 C 0.08 3.10 3.20 44.92 0.14 3.24 16 18 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 19 C -0.13 -4.02 9.45 71.98 0.68 -3.34 16 20 C 0.03 1.14 4.61 86.31 0.40 1.54 16 21 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.04 1.23 6.49 -2.39 -0.02 1.22 16 24 H 0.09 2.24 8.03 -2.39 -0.02 2.22 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.31 6.75 -2.39 -0.02 1.29 16 27 H 0.04 1.30 6.40 -2.39 -0.02 1.28 16 28 H 0.06 2.57 6.33 -2.39 -0.02 2.55 16 29 H 0.02 0.86 6.41 -2.38 -0.02 0.84 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.31 15.01 8.70 -89.69 -0.78 14.23 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 0.94 6.75 -2.38 -0.02 0.93 16 36 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 Total: -1.00 -61.74 277.18 -0.36 -62.11 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.26 Total: 19.51 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 3.75 Total: -17.42 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -6.40 Total: -110.39 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -61.74 -0.36 -62.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251772177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.509 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds