Wall clock time and date at job start Mon Mar 30 2020 02:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 108.66020 * 2 1 4 4 C 1.50744 * 108.79115 * 118.29791 * 2 1 3 5 5 C 1.54515 * 108.93947 * 213.54576 * 4 2 1 6 6 N 1.40082 * 111.51238 * 283.98751 * 5 4 2 7 7 C 1.46897 * 111.00129 * 188.14806 * 6 5 4 8 8 C 1.47683 * 114.56886 * 61.44918 * 6 5 4 9 9 H 1.08997 * 109.74084 * 38.34857 * 8 6 5 10 10 C 1.50700 * 109.73719 * 158.99747 * 8 6 5 11 11 H 1.08003 * 120.00507 * 60.88469 * 10 8 6 12 12 C 1.37885 * 119.99883 * 240.89218 * 10 8 6 13 13 N 1.31512 * 119.99711 * 6.58216 * 12 10 8 14 14 Si 1.86797 * 120.00043 * 186.58087 * 12 10 8 15 15 H 1.48501 * 109.46958 * 89.99798 * 14 12 10 16 16 H 1.48498 * 109.47291 * 209.99803 * 14 12 10 17 17 H 1.48500 * 109.47459 * 330.00189 * 14 12 10 18 18 C 1.50775 * 108.10407 * 278.69071 * 8 6 5 19 19 N 1.47753 * 111.91285 * 94.60756 * 18 8 6 20 20 C 1.46900 * 110.99783 * 192.81151 * 19 18 8 21 21 H 1.08999 * 109.46951 * 178.29231 * 1 2 3 22 22 H 1.09002 * 109.47236 * 298.28767 * 1 2 3 23 23 H 1.08994 * 109.47585 * 58.29564 * 1 2 3 24 24 H 1.08999 * 109.55931 * 333.38360 * 4 2 1 25 25 H 1.08994 * 109.56012 * 93.60149 * 4 2 1 26 26 H 1.09002 * 109.07311 * 44.50628 * 5 4 2 27 27 H 1.09002 * 109.07309 * 163.46192 * 5 4 2 28 28 H 1.08999 * 109.47700 * 53.09665 * 7 6 5 29 29 H 1.09002 * 109.47162 * 173.09985 * 7 6 5 30 30 H 1.09005 * 109.47356 * 293.10011 * 7 6 5 31 31 H 0.97006 * 119.99726 * 180.02562 * 13 12 10 32 32 H 1.09003 * 108.99282 * 333.98250 * 18 8 6 33 33 H 1.09001 * 108.99843 * 215.24139 * 18 8 6 34 34 H 1.09008 * 109.46668 * 187.59928 * 20 19 18 35 35 H 1.08998 * 109.47485 * 67.60685 * 20 19 18 36 36 H 1.09001 * 109.47252 * 307.59919 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8787 1.0328 0.0000 4 6 2.0155 -0.6765 1.2565 5 6 3.3302 -0.0045 1.7120 6 7 4.4135 -0.4059 0.9198 7 6 5.6822 0.0831 1.4760 8 6 4.2922 -0.0552 -0.5097 9 1 3.8357 0.9295 -0.6097 10 6 5.6563 -0.0509 -1.1502 11 1 6.2474 -0.9546 -1.1680 12 6 6.1498 1.1068 -1.7135 13 7 5.4900 2.2365 -1.5792 14 14 7.7555 1.0707 -2.6672 15 1 7.4751 0.7888 -4.0980 16 1 8.4333 2.3864 -2.5455 17 1 8.6347 0.0082 -2.1165 18 6 3.4202 -1.0906 -1.1737 19 7 2.0068 -0.6643 -1.2343 20 6 1.1333 -1.7879 -1.5987 21 1 -0.3633 -1.0272 -0.0306 22 1 -0.3634 0.4870 0.9049 23 1 -0.3634 0.5400 -0.8742 24 1 1.2637 -0.5753 2.0393 25 1 2.1941 -1.7330 1.0565 26 1 3.2198 1.0777 1.6423 27 1 3.5278 -0.2751 2.7492 28 1 5.7597 -0.2153 2.5215 29 1 6.5134 -0.3428 0.9140 30 1 5.7149 1.1704 1.4052 31 1 5.8370 3.0509 -1.9758 32 1 3.4859 -2.0226 -0.6123 33 1 3.7827 -1.2626 -2.1872 34 1 0.1210 -1.4209 -1.7680 35 1 1.1243 -2.5183 -0.7897 36 1 1.5064 -2.2579 -2.5086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251773001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:45 Heat of formation + Delta-G solvation = -1.675132 kcal Electronic energy + Delta-G solvation = -15516.959757 eV Core-core repulsion = 13228.574192 eV Total energy + Delta-G solvation = -2288.385565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67869 -37.32694 -35.04014 -33.38636 -30.64558 -29.97704 -27.02775 -26.42902 -24.75358 -23.91801 -21.30910 -19.96378 -18.51808 -17.30820 -16.79307 -16.15155 -15.96075 -15.69330 -15.13070 -14.59483 -14.25945 -14.05579 -13.33930 -13.18732 -13.07141 -12.99094 -12.78879 -12.67735 -12.48014 -12.27213 -12.16606 -11.96470 -11.65359 -11.34874 -11.16127 -11.00980 -10.66842 -8.92803 -8.77230 -8.16777 -6.26264 1.40414 1.41749 1.51857 2.39816 3.05299 3.17131 3.56926 3.94151 4.05389 4.26720 4.46104 4.54434 4.58956 4.67143 4.72083 4.80423 4.83978 4.87293 4.91109 4.94726 5.01543 5.10830 5.15699 5.23461 5.31913 5.43323 5.46252 5.62653 5.75704 6.07477 6.37363 6.44773 6.51394 6.96816 7.08606 7.41562 8.91296 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036341 B = 0.010925 C = 0.009633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.301087 B = 2562.320607 C = 2906.084008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.128 4.128 5 C 0.075 3.925 6 N -0.570 5.570 7 C 0.069 3.931 8 C 0.203 3.797 9 H 0.020 0.980 10 C -0.517 4.517 11 H 0.054 0.946 12 C 0.021 3.979 13 N -0.923 5.923 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.264 1.264 18 C 0.092 3.908 19 N -0.568 5.568 20 C 0.029 3.971 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.061 0.939 26 H -0.014 1.014 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.060 0.940 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 -5.601 4.125 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.168 4.168 5 C -0.055 4.055 6 N -0.295 5.295 7 C -0.079 4.079 8 C 0.098 3.902 9 H 0.038 0.962 10 C -0.556 4.556 11 H 0.072 0.928 12 C -0.179 4.179 13 N -0.562 5.562 14 Si 0.782 3.218 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.036 4.036 19 N -0.293 5.293 20 C -0.119 4.119 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.004 0.996 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.044 0.956 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.521 -5.552 3.740 10.068 hybrid contribution 1.120 0.731 -0.047 1.339 sum -6.400 -4.821 3.693 8.823 Atomic orbital electron populations 1.22048 0.92427 1.02839 1.02445 1.21436 0.96365 0.97031 0.87843 0.94457 1.22011 0.96430 0.99924 0.98390 1.21024 0.92224 0.95032 0.97244 1.59512 1.02370 1.63122 1.04506 1.21806 0.92908 0.95686 0.97477 1.19069 0.94517 0.93469 0.83136 0.96230 1.21141 1.02195 0.95811 1.36477 0.92791 1.25741 1.00510 0.94924 0.96696 1.70072 1.41068 0.99683 1.45338 0.85582 0.79604 0.77446 0.79197 1.20001 1.21137 1.18786 1.21859 0.86197 0.96803 0.98753 1.62154 1.02938 1.30298 1.33914 1.22423 0.97919 0.91895 0.99654 0.90835 0.90842 0.92508 0.88631 0.92012 0.99591 0.90964 0.92025 0.92083 0.99227 0.92905 0.95750 0.93241 0.89630 0.95555 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 7.81 71.98 0.56 -3.13 16 2 C 0.08 2.93 2.32 43.96 0.10 3.03 16 3 H 0.04 1.64 6.52 -2.38 -0.02 1.63 16 4 C -0.13 -4.28 5.15 30.38 0.16 -4.13 16 5 C 0.07 2.96 4.95 88.05 0.44 3.39 16 6 N -0.57 -26.13 4.20 -917.54 -3.85 -29.98 16 7 C 0.07 3.11 8.81 127.69 1.12 4.23 16 8 C 0.20 10.51 2.17 43.30 0.09 10.61 16 9 H 0.02 1.19 5.59 -2.39 -0.01 1.17 16 10 C -0.52 -28.53 5.75 25.60 0.15 -28.38 16 11 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 12 C 0.02 1.19 5.45 84.66 0.46 1.65 16 13 N -0.92 -54.93 12.64 21.45 0.27 -54.66 16 14 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 C 0.09 4.21 4.64 85.42 0.40 4.61 16 19 N -0.57 -22.60 4.93 -900.43 -4.44 -27.04 16 20 C 0.03 0.88 8.29 127.69 1.06 1.94 16 21 H 0.07 1.66 6.40 -2.39 -0.02 1.65 16 22 H 0.07 1.65 7.99 -2.39 -0.02 1.63 16 23 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 24 H 0.10 2.52 7.63 -2.39 -0.02 2.50 16 25 H 0.06 2.13 6.68 -2.39 -0.02 2.12 16 26 H -0.01 -0.62 7.60 -2.39 -0.02 -0.64 16 27 H 0.07 2.49 7.87 -2.39 -0.02 2.47 16 28 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 29 H 0.06 2.89 6.56 -2.39 -0.02 2.87 16 30 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 31 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 32 H 0.02 1.09 7.08 -2.39 -0.02 1.07 16 33 H 0.05 2.41 7.71 -2.39 -0.02 2.40 16 34 H 0.09 2.20 6.27 -2.38 -0.01 2.18 16 35 H 0.03 0.74 7.64 -2.39 -0.02 0.73 16 36 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 Total: -1.00 -62.50 267.83 -0.42 -62.93 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.03 Total: 9.01 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.54 Total: -6.16 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -8.02 Total: -111.68 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -62.50 -0.42 -62.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251773001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.251 kcal (2) G-P(sol) polarization free energy of solvation -62.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds