Wall clock time and date at job start Mon Mar 30 2020 02:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 108.74100 * 2 1 4 4 C 1.54310 * 108.85858 * 241.54140 * 2 1 3 5 5 C 1.54316 * 111.73255 * 198.11355 * 4 2 1 6 6 N 1.44186 * 112.61150 * 318.90995 * 5 4 2 7 7 C 1.46896 * 110.99469 * 217.51295 * 6 5 4 8 8 C 1.48091 * 109.90086 * 94.33944 * 6 5 4 9 9 H 1.08997 * 108.94442 * 40.27063 * 8 6 5 10 10 C 1.50704 * 108.94164 * 158.97713 * 8 6 5 11 11 H 1.08000 * 119.99786 * 64.34103 * 10 8 6 12 12 C 1.37875 * 119.99849 * 244.33956 * 10 8 6 13 13 N 1.31514 * 120.00313 * 5.18051 * 12 10 8 14 14 Si 1.86801 * 119.99631 * 185.17569 * 12 10 8 15 15 H 1.48495 * 109.47113 * 90.00284 * 14 12 10 16 16 H 1.48510 * 109.46783 * 210.00271 * 14 12 10 17 17 H 1.48498 * 109.47409 * 330.00258 * 14 12 10 18 18 C 1.46092 * 112.15369 * 279.66396 * 8 6 5 19 19 N 1.44181 * 108.85237 * 118.44887 * 2 1 3 20 20 C 1.46900 * 111.00273 * 338.33176 * 19 2 1 21 21 H 1.08994 * 109.47141 * 301.55028 * 1 2 3 22 22 H 1.09001 * 109.46938 * 61.54462 * 1 2 3 23 23 H 1.09001 * 109.46657 * 181.54074 * 1 2 3 24 24 H 1.09007 * 109.02335 * 318.69066 * 4 2 1 25 25 H 1.08995 * 109.03166 * 77.60006 * 4 2 1 26 26 H 1.08990 * 108.85395 * 198.10617 * 5 4 2 27 27 H 1.08996 * 108.85164 * 79.71477 * 5 4 2 28 28 H 1.08998 * 109.47580 * 291.09915 * 7 6 5 29 29 H 1.08998 * 109.47343 * 51.10357 * 7 6 5 30 30 H 1.09002 * 109.47253 * 171.10229 * 7 6 5 31 31 H 0.96992 * 120.00225 * 179.97438 * 13 12 10 32 32 H 1.08993 * 108.94285 * 181.37721 * 18 8 6 33 33 H 1.08999 * 108.94229 * 300.00036 * 18 8 6 34 34 H 1.08998 * 109.46495 * 293.50721 * 20 19 2 35 35 H 1.08996 * 109.46979 * 53.50844 * 20 19 2 36 36 H 1.08998 * 109.46676 * 173.50933 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8803 1.0322 0.0000 4 6 2.0289 -0.6959 -1.2838 5 6 3.5029 -1.1355 -1.1596 6 7 4.3226 -0.1475 -0.5033 7 6 5.6571 -0.0811 -1.1138 8 6 4.4153 -0.4498 0.9434 9 1 4.5200 -1.5269 1.0739 10 6 5.6349 0.2317 1.5084 11 1 5.6956 1.3100 1.5172 12 6 6.6732 -0.5213 2.0142 13 7 6.6457 -1.8321 1.9117 14 14 8.1192 0.3205 2.8450 15 1 7.8425 0.4611 4.2971 16 1 9.3449 -0.4954 2.6513 17 1 8.3198 1.6648 2.2469 18 6 3.2361 0.0030 1.6775 19 7 1.9960 -0.6500 1.1997 20 6 0.9600 -0.6383 2.2411 21 1 -0.3633 0.5377 0.8757 22 1 -0.3633 0.4897 -0.9035 23 1 -0.3633 -1.0273 0.0276 24 1 1.4112 -1.5734 -1.4752 25 1 1.9344 -0.0055 -2.1219 26 1 3.9015 -1.3172 -2.1576 27 1 3.5467 -2.0640 -0.5905 28 1 6.2044 -0.9970 -0.8914 29 1 5.5575 0.0296 -2.1936 30 1 6.1995 0.7736 -0.7095 31 1 7.3763 -2.3619 2.2672 32 1 3.3697 -0.2227 2.7354 33 1 3.1371 1.0817 1.5572 34 1 0.7803 0.3874 2.5632 35 1 0.0381 -1.0605 1.8412 36 1 1.2931 -1.2332 3.0916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251773003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:47 Heat of formation + Delta-G solvation = 3.006687 kcal Electronic energy + Delta-G solvation = -15453.783501 eV Core-core repulsion = 13165.600955 eV Total energy + Delta-G solvation = -2288.182546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46599 -37.43854 -35.00930 -33.43234 -30.75357 -29.80141 -27.13323 -26.56044 -24.76320 -23.44384 -21.12461 -20.11000 -18.61500 -17.12189 -16.51610 -16.38084 -15.98988 -15.71092 -14.83708 -14.65256 -14.20805 -13.95594 -13.68750 -13.09435 -13.08599 -12.90157 -12.74458 -12.61724 -12.44567 -12.19669 -11.96685 -11.74188 -11.55125 -11.34313 -11.20634 -10.90077 -10.67394 -9.01229 -8.78636 -8.16342 -6.27956 1.39096 1.40360 1.50809 2.38735 3.02694 3.24647 3.68249 4.06887 4.11002 4.40244 4.46880 4.56396 4.62170 4.67125 4.73221 4.77537 4.84022 4.94391 4.98403 5.03535 5.06807 5.14713 5.25410 5.33818 5.35511 5.40006 5.56850 5.64613 5.78234 6.08320 6.38065 6.53101 6.54796 6.91755 7.00862 7.40540 8.90557 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040220 B = 0.010410 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.995437 B = 2688.949423 C = 3085.406800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.087 3.913 3 H 0.026 0.974 4 C -0.088 4.088 5 C 0.063 3.937 6 N -0.542 5.542 7 C 0.068 3.932 8 C 0.197 3.803 9 H 0.010 0.990 10 C -0.521 4.521 11 H 0.049 0.951 12 C 0.023 3.977 13 N -0.921 5.921 14 Si 0.955 3.045 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.266 1.266 18 C 0.099 3.901 19 N -0.554 5.554 20 C 0.025 3.975 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.005 0.995 28 H -0.006 1.006 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.017 0.983 34 H 0.025 0.975 35 H 0.094 0.906 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 2.766 -3.625 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 H 0.044 0.956 4 C -0.126 4.126 5 C -0.067 4.067 6 N -0.267 5.267 7 C -0.080 4.080 8 C 0.091 3.909 9 H 0.028 0.972 10 C -0.560 4.560 11 H 0.068 0.932 12 C -0.177 4.177 13 N -0.560 5.560 14 Si 0.780 3.220 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.029 4.029 19 N -0.278 5.278 20 C -0.123 4.123 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.012 0.988 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.112 0.888 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.765 2.575 -3.752 10.773 hybrid contribution 1.440 0.136 0.929 1.719 sum -8.325 2.711 -2.824 9.199 Atomic orbital electron populations 1.22216 0.93328 1.02554 1.02603 1.21320 0.95127 0.95275 0.90465 0.95571 1.21992 0.94034 1.00146 0.96471 1.21747 0.95048 0.92952 0.96912 1.61911 1.12426 1.47592 1.04766 1.21859 0.90496 0.99278 0.96356 1.18343 0.92349 0.95664 0.84532 0.97191 1.21232 1.02392 0.92779 1.39647 0.93228 1.25721 1.00681 0.95277 0.96055 1.70070 1.33528 1.05889 1.46520 0.85611 0.78648 0.78708 0.79044 1.19956 1.21003 1.19057 1.20974 0.89727 0.94755 0.97400 1.61661 1.04951 1.55726 1.05489 1.22578 0.95735 0.99601 0.94379 0.91908 0.91056 0.91371 0.91172 0.91093 0.92878 0.97710 0.98775 0.92194 0.92814 0.92873 0.93785 0.96474 0.95687 0.88781 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 7.66 71.98 0.55 -3.05 16 2 C 0.09 2.93 2.48 45.87 0.11 3.04 16 3 H 0.03 0.99 7.16 -2.39 -0.02 0.97 16 4 C -0.09 -2.86 5.79 31.49 0.18 -2.68 16 5 C 0.06 2.58 5.28 87.26 0.46 3.04 16 6 N -0.54 -25.23 4.46 -915.39 -4.09 -29.32 16 7 C 0.07 3.14 8.52 127.69 1.09 4.23 16 8 C 0.20 10.28 2.12 41.82 0.09 10.37 16 9 H 0.01 0.62 6.12 -2.39 -0.01 0.60 16 10 C -0.52 -28.79 6.05 25.60 0.15 -28.63 16 11 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 12 C 0.02 1.27 5.45 84.65 0.46 1.73 16 13 N -0.92 -54.30 12.61 21.45 0.27 -54.03 16 14 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C 0.10 4.59 4.34 83.95 0.36 4.95 16 19 N -0.55 -21.35 4.52 -910.81 -4.11 -25.46 16 20 C 0.02 0.76 8.18 127.69 1.04 1.80 16 21 H 0.06 1.41 6.43 -2.39 -0.02 1.40 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.54 7.37 -2.39 -0.02 1.52 16 24 H 0.07 2.04 7.98 -2.38 -0.02 2.02 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.98 7.38 -2.39 -0.02 1.96 16 27 H 0.00 0.21 7.16 -2.39 -0.02 0.20 16 28 H -0.01 -0.34 8.12 -2.39 -0.02 -0.36 16 29 H 0.06 2.30 7.79 -2.39 -0.02 2.28 16 30 H 0.05 2.56 7.01 -2.39 -0.02 2.54 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.04 2.13 7.83 -2.39 -0.02 2.11 16 33 H 0.02 0.80 7.37 -2.39 -0.02 0.78 16 34 H 0.02 0.72 7.75 -2.39 -0.02 0.70 16 35 H 0.09 2.35 5.73 -2.39 -0.01 2.34 16 36 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 Total: -1.00 -61.79 270.07 -0.37 -62.15 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.03 Total: 6.12 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 4.51 Total: -5.20 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -7.93 Total: -108.80 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -61.79 -0.37 -62.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251773003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.160 kcal (2) G-P(sol) polarization free energy of solvation -61.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds