Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.52419 * 2 1 4 4 C 1.53116 * 109.58172 * 239.83391 * 2 1 3 5 5 C 1.53037 * 109.28293 * 182.40835 * 4 2 1 6 6 N 1.46850 * 109.51777 * 59.17903 * 5 4 2 7 7 C 1.46907 * 110.99704 * 174.15936 * 6 5 4 8 8 C 1.53004 * 109.47025 * 294.21367 * 7 6 5 9 9 C 1.50695 * 109.46637 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00546 * 0.27598 * 9 8 7 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47228 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 120.00131 * 13 11 9 16 16 H 1.48500 * 109.47000 * 240.00224 * 13 11 9 17 17 C 1.46839 * 111.20307 * 298.25722 * 6 5 4 18 18 C 1.53040 * 109.52256 * 61.74247 * 17 6 5 19 19 H 1.09004 * 109.50258 * 60.80488 * 18 17 6 20 20 N 1.46899 * 109.50578 * 180.87868 * 18 17 6 21 21 H 1.09001 * 109.47508 * 299.88014 * 1 2 3 22 22 H 1.09010 * 109.46594 * 59.88204 * 1 2 3 23 23 H 1.08996 * 109.47183 * 179.87401 * 1 2 3 24 24 H 1.08998 * 109.50031 * 302.35478 * 4 2 1 25 25 H 1.09005 * 109.49993 * 62.42954 * 4 2 1 26 26 H 1.08998 * 109.46260 * 299.17322 * 5 4 2 27 27 H 1.08998 * 109.46356 * 179.19254 * 5 4 2 28 28 H 1.09000 * 109.46806 * 174.21444 * 7 6 5 29 29 H 1.08997 * 109.46869 * 54.20949 * 7 6 5 30 30 H 1.08992 * 109.47421 * 60.00076 * 8 7 6 31 31 H 1.08997 * 109.46955 * 299.99529 * 8 7 6 32 32 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.46657 * 181.75972 * 17 6 5 34 34 H 1.09001 * 109.46307 * 301.73114 * 17 6 5 35 35 H 1.00901 * 110.99959 * 300.00673 * 20 18 17 36 36 H 1.00899 * 110.99870 * 63.95617 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0431 -0.7249 -1.2472 5 6 3.5723 -0.7736 -1.2102 6 7 4.0115 -1.4766 0.0020 7 6 5.4686 -1.6642 0.0029 8 6 5.8619 -2.6083 -1.1350 9 6 7.3565 -2.8012 -1.1336 10 1 7.9645 -2.3040 -0.3923 11 6 7.9471 -3.6174 -2.0750 12 7 7.2062 -4.2272 -2.9743 13 14 9.7999 -3.8559 -2.0737 14 1 10.3999 -3.0659 -0.9688 15 1 10.1136 -5.2945 -1.8801 16 1 10.3588 -3.3976 -3.3709 17 6 3.5708 -0.7730 1.2131 18 6 2.0416 -0.7242 1.2484 19 1 1.6455 -1.7395 1.2688 20 7 1.6015 -0.0019 2.4494 21 1 -0.3634 0.5120 0.8910 22 1 -0.3633 0.5157 -0.8890 23 1 -0.3633 -1.0276 -0.0023 24 1 1.6470 -1.7402 -1.2668 25 1 1.7170 -0.1898 -2.1391 26 1 3.9679 0.2420 -1.2045 27 1 3.9402 -1.3018 -2.0898 28 1 5.7789 -2.0939 0.9553 29 1 5.9589 -0.7010 -0.1383 30 1 5.5516 -2.1787 -2.0874 31 1 5.3716 -3.5715 -0.9938 32 1 7.6218 -4.8011 -3.6368 33 1 3.9377 -1.3005 2.0935 34 1 3.9665 0.2427 1.2074 35 1 1.9297 -0.4590 3.2869 36 1 1.9009 0.9613 2.4221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251816912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = -19.855124 kcal Electronic energy + Delta-G solvation = -14535.673563 eV Core-core repulsion = 12246.499654 eV Total energy + Delta-G solvation = -2289.173908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15970 -35.35473 -33.04655 -32.74571 -29.90739 -28.59433 -26.58543 -24.07391 -22.47118 -21.89225 -19.93258 -19.60124 -16.47338 -15.77892 -15.25878 -14.71345 -14.54350 -14.33115 -14.06061 -13.46217 -13.02046 -12.76412 -12.12387 -12.03846 -11.90525 -11.82782 -11.18536 -11.02184 -10.93773 -10.63006 -10.51407 -10.29971 -10.12104 -9.80711 -9.51475 -9.11089 -8.61737 -8.33499 -7.71970 -6.00112 -4.02521 3.30598 3.37960 3.41876 4.30021 4.48085 4.69170 4.84069 4.99529 5.20548 5.35831 5.43205 5.51058 5.64337 5.74922 5.81178 5.85134 5.99897 6.04019 6.12566 6.24886 6.31097 6.36130 6.47388 6.54296 6.61185 6.95593 7.07928 7.39996 7.51404 7.60285 7.80502 7.89992 8.08090 8.43212 9.04886 9.61162 11.11317 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062586 B = 0.006047 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.280049 B = 4629.540632 C = 4932.178566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.060 0.940 4 C -0.111 4.111 5 C 0.053 3.947 6 N -0.534 5.534 7 C 0.063 3.937 8 C 0.028 3.972 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.025 3.975 18 C 0.097 3.903 19 H 0.088 0.912 20 N -0.841 5.841 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.021 0.979 35 H 0.339 0.661 36 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 8.456 6.605 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.075 4.075 6 N -0.259 5.259 7 C -0.063 4.063 8 C -0.010 4.010 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.106 4.106 18 C -0.015 4.015 19 H 0.106 0.894 20 N -0.369 5.369 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.151 0.849 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.456 7.707 6.219 15.143 hybrid contribution 2.608 0.750 0.128 2.716 sum -8.848 8.457 6.347 13.788 Atomic orbital electron populations 1.21695 0.94746 1.01678 1.01183 1.21165 0.96078 0.98654 0.94350 0.92186 1.21665 0.95489 1.01161 0.96667 1.22136 0.94614 0.96169 0.94587 1.61992 1.15146 1.48068 1.00648 1.22331 0.83533 0.98772 1.01706 1.19104 0.95529 0.94368 0.91963 1.21234 0.92534 1.28047 1.14271 0.92815 1.24994 0.98072 0.95685 0.95541 1.69983 1.35062 1.30732 1.17439 0.86544 0.85741 0.77915 0.77845 1.19807 1.20958 1.21009 1.22941 0.96718 0.96269 0.94683 1.21541 0.91934 0.98402 0.89600 0.89362 1.59055 1.67093 1.06326 1.04385 0.91904 0.93605 0.92968 0.90966 0.91728 0.95899 0.89394 0.92278 0.96424 0.96417 0.95693 0.93035 0.91495 0.96057 0.84861 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.07 37.15 0.34 -1.18 16 2 C -0.08 -1.04 2.42 -90.50 -0.22 -1.26 16 3 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.57 5.38 -26.65 -0.14 -1.71 16 5 C 0.05 0.91 5.29 -3.83 -0.02 0.89 16 6 N -0.53 -9.89 4.66 -234.67 -1.09 -10.98 16 7 C 0.06 1.37 4.90 -3.82 -0.02 1.35 16 8 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 9 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 10 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 13 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.02 0.37 5.03 -3.84 -0.02 0.35 16 18 C 0.10 1.25 2.83 -67.63 -0.19 1.06 16 19 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 20 N -0.84 -8.85 8.61 -4.59 -0.04 -8.89 16 21 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 22 H 0.04 0.47 8.14 -51.92 -0.42 0.04 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 1.71 6.21 -51.93 -0.32 1.39 16 28 H 0.06 1.26 7.99 -51.93 -0.41 0.85 16 29 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.02 0.49 6.43 -51.93 -0.33 0.15 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 0.99 8.02 -51.93 -0.42 0.58 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.34 3.18 9.04 -39.29 -0.36 2.83 16 36 H 0.33 3.20 8.98 -39.29 -0.35 2.85 16 LS Contribution 283.60 15.07 4.27 4.27 Total: -1.00 -29.81 283.60 -8.33 -38.14 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.36 Total: 0.60 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.82 Total: -13.57 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.40 Total: -46.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.81 -8.33 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251816912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.281 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds