Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.52419 * 2 1 4 4 C 1.53116 * 109.58172 * 239.83391 * 2 1 3 5 5 C 1.53037 * 109.28293 * 182.40835 * 4 2 1 6 6 N 1.46850 * 109.51777 * 59.17903 * 5 4 2 7 7 C 1.46907 * 110.99704 * 174.15936 * 6 5 4 8 8 C 1.53004 * 109.47025 * 294.21367 * 7 6 5 9 9 C 1.50695 * 109.46637 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00546 * 0.27598 * 9 8 7 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47228 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 120.00131 * 13 11 9 16 16 H 1.48500 * 109.47000 * 240.00224 * 13 11 9 17 17 C 1.46839 * 111.20307 * 298.25722 * 6 5 4 18 18 C 1.53040 * 109.52256 * 61.74247 * 17 6 5 19 19 H 1.09004 * 109.50258 * 60.80488 * 18 17 6 20 20 N 1.46899 * 109.50578 * 180.87868 * 18 17 6 21 21 H 1.09001 * 109.47508 * 299.88014 * 1 2 3 22 22 H 1.09010 * 109.46594 * 59.88204 * 1 2 3 23 23 H 1.08996 * 109.47183 * 179.87401 * 1 2 3 24 24 H 1.08998 * 109.50031 * 302.35478 * 4 2 1 25 25 H 1.09005 * 109.49993 * 62.42954 * 4 2 1 26 26 H 1.08998 * 109.46260 * 299.17322 * 5 4 2 27 27 H 1.08998 * 109.46356 * 179.19254 * 5 4 2 28 28 H 1.09000 * 109.46806 * 174.21444 * 7 6 5 29 29 H 1.08997 * 109.46869 * 54.20949 * 7 6 5 30 30 H 1.08992 * 109.47421 * 60.00076 * 8 7 6 31 31 H 1.08997 * 109.46955 * 299.99529 * 8 7 6 32 32 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.46657 * 181.75972 * 17 6 5 34 34 H 1.09001 * 109.46307 * 301.73114 * 17 6 5 35 35 H 1.00901 * 110.99959 * 300.00673 * 20 18 17 36 36 H 1.00899 * 110.99870 * 63.95617 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0431 -0.7249 -1.2472 5 6 3.5723 -0.7736 -1.2102 6 7 4.0115 -1.4766 0.0020 7 6 5.4686 -1.6642 0.0029 8 6 5.8619 -2.6083 -1.1350 9 6 7.3565 -2.8012 -1.1336 10 1 7.9645 -2.3040 -0.3923 11 6 7.9471 -3.6174 -2.0750 12 7 7.2062 -4.2272 -2.9743 13 14 9.7999 -3.8559 -2.0737 14 1 10.3999 -3.0659 -0.9688 15 1 10.1136 -5.2945 -1.8801 16 1 10.3588 -3.3976 -3.3709 17 6 3.5708 -0.7730 1.2131 18 6 2.0416 -0.7242 1.2484 19 1 1.6455 -1.7395 1.2688 20 7 1.6015 -0.0019 2.4494 21 1 -0.3634 0.5120 0.8910 22 1 -0.3633 0.5157 -0.8890 23 1 -0.3633 -1.0276 -0.0023 24 1 1.6470 -1.7402 -1.2668 25 1 1.7170 -0.1898 -2.1391 26 1 3.9679 0.2420 -1.2045 27 1 3.9402 -1.3018 -2.0898 28 1 5.7789 -2.0939 0.9553 29 1 5.9589 -0.7010 -0.1383 30 1 5.5516 -2.1787 -2.0874 31 1 5.3716 -3.5715 -0.9938 32 1 7.6218 -4.8011 -3.6368 33 1 3.9377 -1.3005 2.0935 34 1 3.9665 0.2427 1.2074 35 1 1.9297 -0.4590 3.2869 36 1 1.9009 0.9613 2.4221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251816912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = -41.234094 kcal Electronic energy + Delta-G solvation = -14536.600624 eV Core-core repulsion = 12246.499654 eV Total energy + Delta-G solvation = -2290.100970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41488 -36.81282 -34.95869 -33.94639 -31.73767 -29.77348 -28.05169 -25.84322 -23.79731 -23.26928 -21.58644 -20.77498 -18.62287 -16.76804 -16.60306 -16.58044 -16.12934 -15.51392 -15.45463 -14.64814 -14.62557 -14.19686 -13.86260 -13.32749 -13.31947 -13.11206 -12.82756 -12.64747 -12.46489 -12.26898 -11.91838 -11.68014 -11.52577 -11.33049 -11.30778 -11.11084 -10.56113 -9.62699 -9.20899 -8.22108 -6.33895 1.38864 1.39440 1.52702 2.38550 2.99467 3.11195 3.64004 3.76842 3.88184 4.08905 4.19736 4.31264 4.41651 4.50020 4.54066 4.61636 4.76151 4.87230 4.89400 4.97643 5.01737 5.06674 5.22592 5.25414 5.40522 5.47540 5.54303 5.64140 5.76057 6.07872 6.12424 6.30299 6.37453 6.62273 6.83209 7.35424 8.90307 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062586 B = 0.006047 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.280049 B = 4629.540632 C = 4932.178566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 H 0.067 0.933 4 C -0.105 4.105 5 C 0.053 3.947 6 N -0.547 5.547 7 C 0.080 3.920 8 C 0.037 3.963 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.026 3.974 18 C 0.107 3.893 19 H 0.074 0.926 20 N -0.833 5.833 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.017 0.983 30 H -0.005 1.005 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.348 0.652 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 9.598 7.620 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.143 4.143 5 C -0.074 4.074 6 N -0.272 5.272 7 C -0.048 4.048 8 C -0.001 4.001 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.104 4.104 18 C -0.005 4.005 19 H 0.092 0.908 20 N -0.362 5.362 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.014 0.986 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.161 0.839 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.532 8.868 7.257 16.257 hybrid contribution 2.583 0.396 -0.187 2.620 sum -8.949 9.264 7.070 14.693 Atomic orbital electron populations 1.21627 0.93280 1.01664 1.02026 1.21134 0.97162 0.98502 0.93026 0.91488 1.21625 0.92776 1.01272 0.98622 1.22116 0.96957 0.95498 0.92876 1.61912 1.12887 1.49778 1.02578 1.21966 0.85908 0.97353 0.99577 1.18922 0.94636 0.93661 0.92870 1.21649 0.93705 1.28436 1.14648 0.92301 1.25972 1.03608 0.95118 0.94907 1.70117 1.37498 1.31353 1.18185 0.85364 0.79011 0.78124 0.78319 1.18611 1.20246 1.20233 1.23064 0.98418 0.96051 0.92866 1.21367 0.90006 0.98186 0.90969 0.90757 1.59013 1.66630 1.06748 1.03776 0.91386 0.92438 0.93417 0.91942 0.89934 0.95509 0.92645 0.92056 0.96526 0.98631 0.99009 0.92688 0.91243 0.95436 0.83885 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.07 71.98 0.65 -1.88 16 2 C -0.08 -1.82 2.42 -10.72 -0.03 -1.84 16 3 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 4 C -0.10 -2.85 5.38 30.65 0.16 -2.69 16 5 C 0.05 1.87 5.29 86.33 0.46 2.32 16 6 N -0.55 -20.39 4.66 -896.35 -4.17 -24.57 16 7 C 0.08 3.50 4.90 86.30 0.42 3.93 16 8 C 0.04 2.01 4.90 29.85 0.15 2.15 16 9 C -0.55 -31.81 9.11 25.60 0.23 -31.57 16 10 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 11 C 0.00 0.11 5.46 84.66 0.46 0.58 16 12 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 13 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 C 0.03 0.75 5.03 86.33 0.43 1.19 16 18 C 0.11 2.57 2.83 44.97 0.13 2.70 16 19 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 20 N -0.83 -15.36 8.61 -168.45 -1.45 -16.81 16 21 H 0.07 1.29 7.68 -2.39 -0.02 1.27 16 22 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 2.27 6.21 -2.39 -0.01 2.26 16 28 H 0.06 2.64 7.99 -2.39 -0.02 2.62 16 29 H 0.02 0.72 8.12 -2.39 -0.02 0.71 16 30 H 0.00 -0.27 6.43 -2.39 -0.02 -0.28 16 31 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.07 1.96 8.02 -2.39 -0.02 1.94 16 34 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.35 5.64 9.04 -89.69 -0.81 4.83 16 36 H 0.34 5.52 8.98 -89.69 -0.81 4.71 16 Total: -1.00 -64.48 283.60 -0.81 -65.28 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.57 Total: 11.82 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.07 Total: -25.12 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -5.34 Total: -98.70 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.48 -0.81 -65.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251816912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.051 kcal (2) G-P(sol) polarization free energy of solvation -64.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds