Wall clock time and date at job start Mon Mar 30 2020 02:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.57346 * 2 1 4 4 C 1.53119 * 109.52062 * 120.15783 * 2 1 3 5 5 C 1.53035 * 109.27627 * 177.55658 * 4 2 1 6 6 N 1.46846 * 109.52540 * 300.82398 * 5 4 2 7 7 C 1.46898 * 111.00277 * 185.84386 * 6 5 4 8 8 C 1.53002 * 109.47585 * 66.03724 * 7 6 5 9 9 C 1.50696 * 109.46997 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.46840 * 111.20284 * 61.73806 * 6 5 4 18 18 C 1.53036 * 109.52557 * 298.26473 * 17 6 5 19 19 H 1.08996 * 109.54019 * 179.13870 * 18 17 6 20 20 N 1.46901 * 109.50089 * 299.23386 * 18 17 6 21 21 H 1.09006 * 109.47074 * 299.84645 * 1 2 3 22 22 H 1.09006 * 109.47465 * 59.83964 * 1 2 3 23 23 H 1.09002 * 109.47902 * 179.84155 * 1 2 3 24 24 H 1.08998 * 109.50250 * 57.61937 * 4 2 1 25 25 H 1.08993 * 109.53714 * 297.51678 * 4 2 1 26 26 H 1.09001 * 109.46403 * 180.80633 * 5 4 2 27 27 H 1.09002 * 109.46541 * 60.83535 * 5 4 2 28 28 H 1.09005 * 109.46746 * 306.04105 * 7 6 5 29 29 H 1.09002 * 109.47495 * 186.04225 * 7 6 5 30 30 H 1.09005 * 109.46767 * 60.00394 * 8 7 6 31 31 H 1.09002 * 109.47113 * 300.00734 * 8 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.45853 * 58.27288 * 17 6 5 34 34 H 1.09000 * 109.46662 * 178.24352 * 17 6 5 35 35 H 1.00902 * 111.00354 * 299.80141 * 20 18 17 36 36 H 1.00903 * 111.00058 * 63.75408 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7250 1.2478 5 6 3.5707 -0.7752 1.2116 6 7 4.0101 -1.4789 0.0000 7 6 5.4669 -1.6680 0.0000 8 6 5.8581 -2.6172 1.1344 9 6 7.3526 -2.8105 1.1347 10 1 7.9625 -2.3065 0.3996 11 6 7.9414 -3.6310 2.0735 12 7 9.2458 -3.7993 2.0741 13 14 6.8864 -4.5033 3.3445 14 1 6.7474 -3.6432 4.5470 15 1 5.5434 -4.7740 2.7715 16 1 7.5299 -5.7864 3.7253 17 6 3.5707 -0.7753 -1.2117 18 6 2.0416 -0.7251 -1.2478 19 1 1.7155 -0.1895 -2.1393 20 7 1.5065 -2.0929 -1.2743 21 1 -0.3633 0.5115 0.8914 22 1 -0.3634 0.5163 -0.8886 23 1 -0.3635 -1.0276 -0.0028 24 1 1.6446 -1.7399 1.2674 25 1 1.7161 -0.1896 2.1397 26 1 3.9377 -1.3034 2.0917 27 1 3.9674 0.2400 1.2059 28 1 5.9581 -0.7058 0.1457 29 1 5.7781 -2.0940 -0.9538 30 1 5.3670 -3.5793 0.9887 31 1 5.5470 -2.1911 2.0882 32 1 9.6600 -4.3762 2.7348 33 1 3.9674 0.2400 -1.2060 34 1 3.9377 -1.3035 -2.0917 35 1 1.8302 -2.5922 -2.0891 36 1 1.7424 -2.5899 -0.4284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251816915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:37 Heat of formation + Delta-G solvation = -15.267759 kcal Electronic energy + Delta-G solvation = -14762.828415 eV Core-core repulsion = 12473.853430 eV Total energy + Delta-G solvation = -2288.974985 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41617 -35.36120 -32.81567 -32.43678 -30.30834 -28.99471 -26.87718 -24.11470 -22.85663 -21.82515 -19.99794 -18.83569 -16.98442 -16.19136 -14.96430 -14.83205 -14.58498 -14.24630 -13.85327 -13.57336 -13.17829 -12.69998 -12.55752 -12.30220 -11.97248 -11.78652 -11.64298 -11.29526 -10.98721 -10.65435 -10.33689 -10.22882 -9.93330 -9.85930 -9.69190 -9.21990 -8.54313 -8.49492 -7.86970 -6.06061 -4.04373 3.30426 3.38190 3.43728 4.27793 4.44675 4.76738 4.81524 4.93425 5.08557 5.28289 5.32185 5.53305 5.59779 5.69695 5.74889 5.76285 5.81710 5.94968 6.03447 6.11243 6.17322 6.23319 6.35932 6.38311 6.53264 6.73268 7.11740 7.27662 7.35662 7.58302 7.60631 7.68704 7.83036 8.51240 8.97842 9.56348 11.07350 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049634 B = 0.007182 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.996867 B = 3897.658728 C = 4118.201393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.114 4.114 5 C 0.050 3.950 6 N -0.541 5.541 7 C 0.072 3.928 8 C -0.006 4.006 9 C -0.522 4.522 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.880 3.120 14 H -0.278 1.278 15 H -0.263 1.263 16 H -0.288 1.288 17 C 0.018 3.982 18 C 0.100 3.900 19 H 0.076 0.924 20 N -0.836 5.836 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.028 0.972 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.335 0.665 36 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.808 6.468 -4.018 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.078 4.078 6 N -0.265 5.265 7 C -0.055 4.055 8 C -0.044 4.044 9 C -0.561 4.561 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.708 3.292 14 H -0.204 1.204 15 H -0.187 1.187 16 H -0.214 1.214 17 C -0.112 4.112 18 C -0.013 4.013 19 H 0.094 0.906 20 N -0.365 5.365 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.601 6.260 -3.963 18.180 hybrid contribution 1.221 0.099 0.738 1.430 sum -15.381 6.359 -3.225 16.953 Atomic orbital electron populations 1.21676 0.94673 1.02564 1.00307 1.21192 0.96174 0.98455 0.94735 0.91735 1.21682 0.95167 1.01216 0.97085 1.22157 0.94822 0.96531 0.94299 1.61973 1.15252 1.48301 1.01018 1.22106 0.83472 0.98768 1.01128 1.19565 0.96873 0.94921 0.93001 1.21085 0.90416 1.28445 1.16146 0.91211 1.25000 0.94806 0.96132 0.97411 1.69917 1.09464 1.38767 1.36128 0.86763 0.81311 0.79261 0.81908 1.20387 1.18736 1.21388 1.22921 0.97224 0.97017 0.94051 1.21446 0.90816 0.91299 0.97690 0.90606 1.59118 1.65191 1.03573 1.08648 0.93726 0.93373 0.91390 0.90939 0.91864 0.89950 0.95416 0.95676 0.91662 0.95785 0.97085 0.92712 0.95278 0.91156 0.85323 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.02 37.16 0.34 -1.07 16 2 C -0.09 -1.01 2.61 -90.50 -0.24 -1.25 16 3 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.45 5.05 -26.65 -0.13 -1.59 16 5 C 0.05 0.78 5.29 -3.84 -0.02 0.76 16 6 N -0.54 -9.03 4.11 -234.67 -0.96 -10.00 16 7 C 0.07 1.46 4.90 -3.82 -0.02 1.44 16 8 C -0.01 -0.14 3.98 -27.88 -0.11 -0.25 16 9 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 10 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 13 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 C 0.02 0.26 5.09 -3.84 -0.02 0.24 16 18 C 0.10 1.20 3.18 -67.63 -0.22 0.99 16 19 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 20 N -0.84 -10.02 8.36 -4.60 -0.04 -10.06 16 21 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 24 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.42 6.22 -51.93 -0.32 1.10 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 30 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 31 H 0.01 0.26 5.87 -51.93 -0.30 -0.04 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 35 H 0.34 3.77 9.04 -39.29 -0.36 3.42 16 36 H 0.35 4.65 6.63 -39.29 -0.26 4.39 16 LS Contribution 275.51 15.07 4.15 4.15 Total: -1.00 -29.61 275.51 -7.75 -37.36 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.15 Total: 2.76 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.85 Total: -14.18 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.23 Total: -47.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.61 -7.75 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251816915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.095 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds