Wall clock time and date at job start Mon Mar 30 2020 02:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.57346 * 2 1 4 4 C 1.53119 * 109.52062 * 120.15783 * 2 1 3 5 5 C 1.53035 * 109.27627 * 177.55658 * 4 2 1 6 6 N 1.46846 * 109.52540 * 300.82398 * 5 4 2 7 7 C 1.46898 * 111.00277 * 185.84386 * 6 5 4 8 8 C 1.53002 * 109.47585 * 66.03724 * 7 6 5 9 9 C 1.50696 * 109.46997 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.46840 * 111.20284 * 61.73806 * 6 5 4 18 18 C 1.53036 * 109.52557 * 298.26473 * 17 6 5 19 19 H 1.08996 * 109.54019 * 179.13870 * 18 17 6 20 20 N 1.46901 * 109.50089 * 299.23386 * 18 17 6 21 21 H 1.09006 * 109.47074 * 299.84645 * 1 2 3 22 22 H 1.09006 * 109.47465 * 59.83964 * 1 2 3 23 23 H 1.09002 * 109.47902 * 179.84155 * 1 2 3 24 24 H 1.08998 * 109.50250 * 57.61937 * 4 2 1 25 25 H 1.08993 * 109.53714 * 297.51678 * 4 2 1 26 26 H 1.09001 * 109.46403 * 180.80633 * 5 4 2 27 27 H 1.09002 * 109.46541 * 60.83535 * 5 4 2 28 28 H 1.09005 * 109.46746 * 306.04105 * 7 6 5 29 29 H 1.09002 * 109.47495 * 186.04225 * 7 6 5 30 30 H 1.09005 * 109.46767 * 60.00394 * 8 7 6 31 31 H 1.09002 * 109.47113 * 300.00734 * 8 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.45853 * 58.27288 * 17 6 5 34 34 H 1.09000 * 109.46662 * 178.24352 * 17 6 5 35 35 H 1.00902 * 111.00354 * 299.80141 * 20 18 17 36 36 H 1.00903 * 111.00058 * 63.75408 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7250 1.2478 5 6 3.5707 -0.7752 1.2116 6 7 4.0101 -1.4789 0.0000 7 6 5.4669 -1.6680 0.0000 8 6 5.8581 -2.6172 1.1344 9 6 7.3526 -2.8105 1.1347 10 1 7.9625 -2.3065 0.3996 11 6 7.9414 -3.6310 2.0735 12 7 9.2458 -3.7993 2.0741 13 14 6.8864 -4.5033 3.3445 14 1 6.7474 -3.6432 4.5470 15 1 5.5434 -4.7740 2.7715 16 1 7.5299 -5.7864 3.7253 17 6 3.5707 -0.7753 -1.2117 18 6 2.0416 -0.7251 -1.2478 19 1 1.7155 -0.1895 -2.1393 20 7 1.5065 -2.0929 -1.2743 21 1 -0.3633 0.5115 0.8914 22 1 -0.3634 0.5163 -0.8886 23 1 -0.3635 -1.0276 -0.0028 24 1 1.6446 -1.7399 1.2674 25 1 1.7161 -0.1896 2.1397 26 1 3.9377 -1.3034 2.0917 27 1 3.9674 0.2400 1.2059 28 1 5.9581 -0.7058 0.1457 29 1 5.7781 -2.0940 -0.9538 30 1 5.3670 -3.5793 0.9887 31 1 5.5470 -2.1911 2.0882 32 1 9.6600 -4.3762 2.7348 33 1 3.9674 0.2400 -1.2060 34 1 3.9377 -1.3035 -2.0917 35 1 1.8302 -2.5922 -2.0891 36 1 1.7424 -2.5899 -0.4284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251816915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:36 Heat of formation + Delta-G solvation = -36.429855 kcal Electronic energy + Delta-G solvation = -14763.746072 eV Core-core repulsion = 12473.853430 eV Total energy + Delta-G solvation = -2289.892643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56261 -36.76757 -34.85858 -33.43859 -32.11518 -30.07130 -28.23109 -25.74995 -24.03781 -23.10173 -21.70298 -19.86488 -19.06113 -17.34159 -16.52362 -16.13168 -16.05141 -15.70399 -15.10438 -14.71660 -14.61719 -14.58295 -13.81117 -13.49583 -13.40004 -12.98958 -12.92993 -12.69443 -12.48433 -11.96887 -11.84446 -11.75684 -11.53118 -11.45659 -11.22456 -11.02295 -10.76179 -9.53657 -9.19633 -8.32700 -6.37329 1.34144 1.36724 1.49698 2.34289 2.95554 3.02923 3.78258 3.81595 3.91834 4.07417 4.16748 4.39920 4.46387 4.49067 4.53461 4.67674 4.76330 4.87879 4.87962 4.89897 4.93730 5.08071 5.20834 5.26077 5.26590 5.40979 5.45575 5.60263 5.64223 6.09445 6.18504 6.27682 6.42361 6.70145 6.72012 7.27638 8.84134 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049634 B = 0.007182 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.996867 B = 3897.658728 C = 4118.201393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.106 4.106 5 C 0.047 3.953 6 N -0.539 5.539 7 C 0.084 3.916 8 C 0.003 3.997 9 C -0.536 4.536 10 H 0.030 0.970 11 C 0.007 3.993 12 N -0.951 5.951 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.247 1.247 16 H -0.282 1.282 17 C 0.018 3.982 18 C 0.106 3.894 19 H 0.091 0.909 20 N -0.832 5.832 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.025 0.975 28 H 0.013 0.987 29 H 0.059 0.941 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.340 0.660 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.453 6.631 -3.576 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.144 4.144 5 C -0.081 4.081 6 N -0.264 5.264 7 C -0.044 4.044 8 C -0.035 4.035 9 C -0.574 4.574 10 H 0.048 0.952 11 C -0.190 4.190 12 N -0.591 5.591 13 Si 0.775 3.225 14 H -0.191 1.191 15 H -0.170 1.170 16 H -0.208 1.208 17 C -0.112 4.112 18 C -0.007 4.007 19 H 0.109 0.891 20 N -0.361 5.361 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.269 6.439 -3.542 20.623 hybrid contribution 2.107 0.104 0.527 2.174 sum -17.162 6.543 -3.015 18.613 Atomic orbital electron populations 1.21603 0.93377 1.02337 1.01213 1.21202 0.97137 0.98343 0.93727 0.91328 1.21634 0.92609 1.01599 0.98517 1.22215 0.97020 0.95855 0.92995 1.61912 1.12348 1.49525 1.02634 1.21788 0.86106 0.97192 0.99298 1.19414 0.93567 0.95725 0.94755 1.21421 0.92747 1.28026 1.15223 0.95188 1.25986 0.96122 0.97002 0.99870 1.70066 1.11602 1.39955 1.37481 0.85628 0.79847 0.78032 0.78978 1.19132 1.17032 1.20814 1.23037 0.98980 0.96549 0.92655 1.21475 0.88890 0.91621 0.98707 0.89073 1.59131 1.64921 1.03531 1.08525 0.92732 0.92631 0.92127 0.91165 0.90287 0.91699 0.95628 0.96877 0.92286 0.95945 0.96441 0.92388 0.95362 0.91143 0.84816 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.02 71.98 0.65 -1.60 16 2 C -0.09 -1.73 2.61 -10.71 -0.03 -1.76 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.11 -2.43 5.05 30.65 0.15 -2.28 16 5 C 0.05 1.40 5.29 86.33 0.46 1.86 16 6 N -0.54 -17.41 4.11 -896.36 -3.68 -21.09 16 7 C 0.08 3.41 4.90 86.30 0.42 3.84 16 8 C 0.00 0.15 3.98 29.85 0.12 0.27 16 9 C -0.54 -31.51 9.66 25.60 0.25 -31.26 16 10 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 11 C 0.01 0.43 5.47 84.66 0.46 0.89 16 12 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 13 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 C 0.02 0.47 5.09 86.33 0.44 0.91 16 18 C 0.11 2.27 3.18 44.97 0.14 2.41 16 19 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 20 N -0.83 -17.95 8.36 -168.46 -1.41 -19.36 16 21 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.06 1.17 7.54 -2.39 -0.02 1.16 16 24 H 0.07 1.68 6.71 -2.39 -0.02 1.66 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 2.16 6.22 -2.39 -0.01 2.14 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.01 0.55 8.12 -2.38 -0.02 0.53 16 29 H 0.06 2.44 7.98 -2.39 -0.02 2.42 16 30 H 0.02 1.08 7.20 -2.38 -0.02 1.06 16 31 H 0.02 0.81 5.87 -2.39 -0.01 0.80 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.07 1.86 8.01 -2.39 -0.02 1.84 16 35 H 0.34 6.89 9.04 -89.69 -0.81 6.08 16 36 H 0.34 8.35 6.63 -89.69 -0.59 7.76 16 Total: -1.00 -63.81 275.51 -0.25 -64.05 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.41 Total: 16.35 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.07 Total: -26.73 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -4.79 Total: -100.44 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -63.81 -0.25 -64.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251816915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.624 kcal (2) G-P(sol) polarization free energy of solvation -63.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds