Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47315 * 2 1 4 4 C 1.50702 * 109.47024 * 239.99754 * 2 1 3 5 5 H 1.07994 * 120.00084 * 239.99966 * 4 2 1 6 6 C 1.37881 * 119.99588 * 60.00369 * 4 2 1 7 7 N 1.31509 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47330 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47242 * 119.99824 * 8 6 4 11 11 H 1.48499 * 109.47078 * 239.99923 * 8 6 4 12 12 N 1.46898 * 109.46876 * 120.00147 * 2 1 3 13 13 C 1.46963 * 110.99684 * 176.04743 * 12 2 1 14 14 C 1.53056 * 109.36215 * 183.18755 * 13 12 2 15 15 H 1.08997 * 109.49056 * 61.56647 * 14 13 12 16 16 C 1.53006 * 109.48646 * 181.60487 * 14 13 12 17 17 N 1.46953 * 109.36571 * 301.59782 * 14 13 12 18 18 C 1.46954 * 110.88290 * 59.31944 * 17 14 13 19 19 C 1.46956 * 111.00097 * 299.83948 * 12 2 1 20 20 H 1.09004 * 109.48845 * 56.85121 * 19 12 2 21 21 C 1.52994 * 109.49135 * 296.78224 * 19 12 2 22 22 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46772 * 299.99701 * 1 2 3 24 24 H 1.09002 * 109.47078 * 60.00092 * 1 2 3 25 25 H 0.97005 * 120.00017 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.49116 * 63.21762 * 13 12 2 27 27 H 1.08998 * 109.48714 * 303.14985 * 13 12 2 28 28 H 1.09002 * 109.46648 * 59.99895 * 16 14 13 29 29 H 1.08992 * 109.46607 * 179.97438 * 16 14 13 30 30 H 1.08995 * 109.47286 * 300.00086 * 16 14 13 31 31 H 1.00898 * 111.00079 * 183.19613 * 17 14 13 32 32 H 1.09002 * 109.48555 * 60.64731 * 18 17 14 33 33 H 1.08998 * 109.48990 * 180.71711 * 18 17 14 34 34 H 1.08994 * 109.47659 * 300.10866 * 21 19 12 35 35 H 1.09001 * 109.47358 * 60.11108 * 21 19 12 36 36 H 1.09004 * 109.47284 * 180.10634 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3212 -1.1204 -4.0079 9 1 3.1463 -2.2871 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 7 2.0196 -0.6925 1.1994 13 6 3.4856 -0.7946 1.1870 14 6 3.9493 -1.5897 2.4099 15 1 3.5370 -2.5977 2.3660 16 6 5.4776 -1.6635 2.4212 17 7 3.4812 -0.9213 3.6320 18 6 2.0152 -0.8191 3.6444 19 6 1.5515 -0.0240 2.4215 20 1 0.4628 0.0282 2.4133 21 6 2.1305 1.3909 2.4831 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1609 -3.4844 26 1 3.9200 0.2046 1.2168 27 1 3.8070 -1.3042 0.2787 28 1 5.8896 -0.6554 2.4658 29 1 5.8074 -2.2294 3.2924 30 1 5.8242 -2.1579 1.5138 31 1 3.8176 -1.3968 4.4558 32 1 1.5809 -1.8184 3.6145 33 1 1.6939 -0.3095 4.5527 34 1 3.2191 1.3381 2.4904 35 1 1.8000 1.9569 1.6122 36 1 1.7846 1.8858 3.3906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251823840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = 6.055938 kcal Electronic energy + Delta-G solvation = -15347.221842 eV Core-core repulsion = 13059.171522 eV Total energy + Delta-G solvation = -2288.050320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04087 -35.07757 -32.89884 -31.79156 -29.24550 -28.15791 -25.42007 -24.89540 -23.92292 -21.53333 -19.66349 -17.84923 -16.44146 -16.21171 -14.76363 -14.50292 -14.23627 -13.97632 -13.59791 -13.12848 -12.73321 -12.05202 -11.84363 -11.67532 -11.49315 -11.26623 -11.16130 -10.96513 -10.69605 -10.48824 -10.45047 -10.15014 -9.95951 -9.87325 -9.46942 -8.77861 -8.38965 -8.08100 -7.03139 -5.98474 -4.02498 3.30566 3.38446 3.42584 4.42659 4.52926 4.97830 5.31721 5.36516 5.48218 5.62011 5.74719 5.80641 5.93597 6.06782 6.08318 6.17656 6.23423 6.40241 6.47252 6.57906 6.64442 6.82152 6.84708 7.04041 7.13231 7.19126 7.41320 7.58245 7.70830 7.80965 7.87068 8.27537 8.38582 8.67364 9.04588 9.62280 11.08275 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035053 B = 0.010494 C = 0.008716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.598075 B = 2667.555386 C = 3211.710733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H 0.005 0.995 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.530 5.530 13 C 0.070 3.930 14 C 0.082 3.918 15 H 0.039 0.961 16 C -0.141 4.141 17 N -0.684 5.684 18 C 0.068 3.932 19 C 0.076 3.924 20 H 0.080 0.920 21 C -0.173 4.173 22 H 0.032 0.968 23 H 0.008 0.992 24 H 0.084 0.916 25 H 0.259 0.741 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.330 0.670 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -2.617 9.839 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.254 5.254 13 C -0.059 4.059 14 C -0.028 4.028 15 H 0.057 0.943 16 C -0.199 4.199 17 N -0.315 5.315 18 C -0.062 4.062 19 C -0.033 4.033 20 H 0.097 0.903 21 C -0.232 4.232 22 H 0.051 0.949 23 H 0.027 0.973 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.762 -2.350 9.412 10.405 hybrid contribution 0.289 -0.502 -0.672 0.887 sum 4.051 -2.852 8.740 10.046 Atomic orbital electron populations 1.21830 0.97907 0.99454 0.99831 1.19246 0.92149 0.92406 0.85723 0.97781 1.21210 1.30831 1.12149 0.89890 0.91989 1.24926 0.95269 0.95092 0.98969 1.69904 1.37016 1.23101 1.23203 0.86498 0.78577 0.79626 0.83045 1.19786 1.21089 1.21175 1.62474 1.08737 1.51962 1.02276 1.22035 0.89326 0.98346 0.96145 1.21632 0.94301 0.96056 0.90805 0.94275 1.21758 0.95076 1.02004 1.01106 1.60558 1.10461 1.56411 1.04110 1.21975 0.87523 0.98666 0.98017 1.21717 0.99297 0.91712 0.90591 0.90253 1.22279 1.02335 0.97934 1.00609 0.94901 0.97328 0.89745 0.93107 0.94985 0.89733 0.92132 0.93374 0.92125 0.85328 0.95049 0.91479 0.91727 0.92654 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.75 37.16 0.32 -2.95 16 2 C 0.21 5.36 1.74 -68.86 -0.12 5.24 16 3 H 0.00 0.13 6.38 -51.93 -0.33 -0.20 16 4 C -0.50 -13.82 7.89 -34.44 -0.27 -14.09 16 5 H 0.06 1.71 6.40 -52.49 -0.34 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.53 -11.61 4.52 -219.94 -0.99 -12.61 16 13 C 0.07 1.42 4.23 -3.76 -0.02 1.40 16 14 C 0.08 1.34 3.19 -67.65 -0.22 1.12 16 15 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 16 C -0.14 -1.91 9.47 37.16 0.35 -1.56 16 17 N -0.68 -10.27 5.86 -106.58 -0.62 -10.89 16 18 C 0.07 1.07 6.15 -3.77 -0.02 1.04 16 19 C 0.08 1.44 2.67 -67.66 -0.18 1.26 16 20 H 0.08 1.53 6.15 -51.93 -0.32 1.21 16 21 C -0.17 -3.19 8.37 37.15 0.31 -2.88 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.01 0.18 6.34 -51.93 -0.33 -0.15 16 24 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.03 0.68 6.34 -51.93 -0.33 0.35 16 27 H 0.08 1.85 6.13 -51.93 -0.32 1.53 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.33 4.13 8.83 -39.29 -0.35 3.78 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.23 5.94 -51.93 -0.31 0.92 16 35 H 0.05 1.13 6.48 -51.93 -0.34 0.80 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 268.81 15.07 4.05 4.05 Total: -1.00 -28.38 268.81 -7.68 -36.06 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.79 Total: 1.83 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.99 Total: -48.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.38 -7.68 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251823840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.116 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds