Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47315 * 2 1 4 4 C 1.50702 * 109.47024 * 239.99754 * 2 1 3 5 5 H 1.07994 * 120.00084 * 239.99966 * 4 2 1 6 6 C 1.37881 * 119.99588 * 60.00369 * 4 2 1 7 7 N 1.31509 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47330 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47242 * 119.99824 * 8 6 4 11 11 H 1.48499 * 109.47078 * 239.99923 * 8 6 4 12 12 N 1.46898 * 109.46876 * 120.00147 * 2 1 3 13 13 C 1.46963 * 110.99684 * 176.04743 * 12 2 1 14 14 C 1.53056 * 109.36215 * 183.18755 * 13 12 2 15 15 H 1.08997 * 109.49056 * 61.56647 * 14 13 12 16 16 C 1.53006 * 109.48646 * 181.60487 * 14 13 12 17 17 N 1.46953 * 109.36571 * 301.59782 * 14 13 12 18 18 C 1.46954 * 110.88290 * 59.31944 * 17 14 13 19 19 C 1.46956 * 111.00097 * 299.83948 * 12 2 1 20 20 H 1.09004 * 109.48845 * 56.85121 * 19 12 2 21 21 C 1.52994 * 109.49135 * 296.78224 * 19 12 2 22 22 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46772 * 299.99701 * 1 2 3 24 24 H 1.09002 * 109.47078 * 60.00092 * 1 2 3 25 25 H 0.97005 * 120.00017 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.49116 * 63.21762 * 13 12 2 27 27 H 1.08998 * 109.48714 * 303.14985 * 13 12 2 28 28 H 1.09002 * 109.46648 * 59.99895 * 16 14 13 29 29 H 1.08992 * 109.46607 * 179.97438 * 16 14 13 30 30 H 1.08995 * 109.47286 * 300.00086 * 16 14 13 31 31 H 1.00898 * 111.00079 * 183.19613 * 17 14 13 32 32 H 1.09002 * 109.48555 * 60.64731 * 18 17 14 33 33 H 1.08998 * 109.48990 * 180.71711 * 18 17 14 34 34 H 1.08994 * 109.47659 * 300.10866 * 21 19 12 35 35 H 1.09001 * 109.47358 * 60.11108 * 21 19 12 36 36 H 1.09004 * 109.47284 * 180.10634 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3212 -1.1204 -4.0079 9 1 3.1463 -2.2871 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 7 2.0196 -0.6925 1.1994 13 6 3.4856 -0.7946 1.1870 14 6 3.9493 -1.5897 2.4099 15 1 3.5370 -2.5977 2.3660 16 6 5.4776 -1.6635 2.4212 17 7 3.4812 -0.9213 3.6320 18 6 2.0152 -0.8191 3.6444 19 6 1.5515 -0.0240 2.4215 20 1 0.4628 0.0282 2.4133 21 6 2.1305 1.3909 2.4831 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1609 -3.4844 26 1 3.9200 0.2046 1.2168 27 1 3.8070 -1.3042 0.2787 28 1 5.8896 -0.6554 2.4658 29 1 5.8074 -2.2294 3.2924 30 1 5.8242 -2.1579 1.5138 31 1 3.8176 -1.3968 4.4558 32 1 1.5809 -1.8184 3.6145 33 1 1.6939 -0.3095 4.5527 34 1 3.2191 1.3381 2.4904 35 1 1.8000 1.9569 1.6122 36 1 1.7846 1.8858 3.3906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251823840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = -14.249039 kcal Electronic energy + Delta-G solvation = -15348.102332 eV Core-core repulsion = 13059.171522 eV Total energy + Delta-G solvation = -2288.930810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57890 -36.73440 -34.66636 -33.38296 -31.05577 -29.65477 -27.37092 -26.40183 -25.51816 -23.12974 -21.35185 -19.39871 -18.40560 -17.82120 -16.62495 -15.93409 -15.77786 -15.63123 -14.99109 -14.84473 -14.33691 -13.83365 -13.38335 -13.11960 -12.97192 -12.91303 -12.77852 -12.69940 -12.46280 -12.23248 -12.09347 -11.94297 -11.77376 -11.61239 -11.06704 -10.77906 -10.50012 -9.33944 -8.81110 -8.11184 -6.22570 1.39548 1.41199 1.52930 2.41569 3.16260 3.31596 3.37063 4.01599 4.13409 4.26923 4.36516 4.44976 4.53266 4.76695 4.77631 4.84494 4.88007 4.91371 4.97357 5.03480 5.09031 5.12840 5.14538 5.27273 5.40546 5.48384 5.56412 5.74194 5.83241 6.09613 6.27758 6.42601 6.64945 6.81659 6.93779 7.46440 8.94901 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035053 B = 0.010494 C = 0.008716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.598075 B = 2667.555386 C = 3211.710733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.217 3.783 3 H -0.030 1.030 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.537 5.537 13 C 0.073 3.927 14 C 0.090 3.910 15 H 0.034 0.966 16 C -0.134 4.134 17 N -0.682 5.682 18 C 0.075 3.925 19 C 0.069 3.931 20 H 0.075 0.925 21 C -0.161 4.161 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.058 0.942 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.352 0.648 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -3.603 11.325 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.110 3.890 3 H -0.013 1.013 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.262 5.262 13 C -0.056 4.056 14 C -0.020 4.020 15 H 0.052 0.948 16 C -0.192 4.192 17 N -0.315 5.315 18 C -0.054 4.054 19 C -0.040 4.040 20 H 0.093 0.907 21 C -0.220 4.220 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.171 0.829 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.525 -3.348 10.930 12.294 hybrid contribution 0.044 -0.158 -1.091 1.103 sum 4.569 -3.506 9.839 11.400 Atomic orbital electron populations 1.21639 0.97613 0.98942 0.99586 1.19009 0.92326 0.90621 0.87071 1.01299 1.21473 1.30914 1.12117 0.91149 0.92581 1.25709 0.95438 0.95792 1.01877 1.70030 1.37850 1.24252 1.23893 0.85496 0.78128 0.78629 0.79321 1.19164 1.20599 1.20704 1.62422 1.09786 1.51749 1.02206 1.22001 0.88295 0.97824 0.97465 1.21490 0.96136 0.94733 0.89618 0.94804 1.21702 0.92679 1.02326 1.02502 1.60478 1.10060 1.56609 1.04386 1.21915 0.87907 0.98359 0.97262 1.21880 0.99130 0.92365 0.90649 0.90739 1.22149 1.01712 0.97585 1.00530 0.95300 0.95250 0.92273 0.93006 0.96603 0.92158 0.92493 0.90524 0.92115 0.82879 0.95072 0.88425 0.92432 0.95753 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.75 71.98 0.63 -5.43 16 2 C 0.22 11.35 1.74 44.17 0.08 11.43 16 3 H -0.03 -1.78 6.38 -2.39 -0.02 -1.80 16 4 C -0.52 -29.21 7.89 25.60 0.20 -29.01 16 5 H 0.06 3.16 6.40 -2.91 -0.02 3.14 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -54.00 11.32 21.45 0.24 -53.76 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 N -0.54 -23.70 4.52 -849.75 -3.84 -27.54 16 13 C 0.07 2.97 4.23 86.31 0.37 3.33 16 14 C 0.09 2.79 3.19 44.93 0.14 2.93 16 15 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 16 C -0.13 -3.30 9.47 71.98 0.68 -2.62 16 17 N -0.68 -18.41 5.86 -491.12 -2.88 -21.29 16 18 C 0.08 2.14 6.15 86.31 0.53 2.67 16 19 C 0.07 2.52 2.67 44.92 0.12 2.64 16 20 H 0.07 2.79 6.15 -2.38 -0.01 2.77 16 21 C -0.16 -5.83 8.37 71.98 0.60 -5.23 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.03 1.31 6.34 -2.39 -0.02 1.29 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 25 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 26 H 0.02 0.69 6.34 -2.39 -0.02 0.67 16 27 H 0.06 2.71 6.13 -2.39 -0.01 2.69 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.35 7.32 8.83 -89.70 -0.79 6.53 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.15 5.94 -2.39 -0.01 2.14 16 35 H 0.02 1.00 6.48 -2.39 -0.02 0.99 16 36 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -61.88 268.81 -0.39 -62.26 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.27 Total: 12.10 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 3.80 Total: -18.26 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -6.48 Total: -102.59 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -61.88 -0.39 -62.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251823840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.016 kcal (2) G-P(sol) polarization free energy of solvation -61.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds