Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47068 * 2 1 4 4 C 1.50700 * 109.47190 * 119.99766 * 2 1 3 5 5 H 1.08006 * 120.00259 * 114.59589 * 4 2 1 6 6 C 1.37886 * 120.00066 * 294.59969 * 4 2 1 7 7 N 1.31513 * 119.99842 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99864 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47798 * 59.99808 * 8 6 4 10 10 H 1.48503 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46965 * 299.99417 * 8 6 4 12 12 N 1.46894 * 109.47479 * 239.99611 * 2 1 3 13 13 C 1.46843 * 111.00342 * 294.92700 * 12 2 1 14 14 C 1.53040 * 109.52896 * 174.15700 * 13 12 2 15 15 C 1.53114 * 109.27464 * 59.17762 * 14 13 12 16 16 H 1.09005 * 109.52272 * 62.31836 * 15 14 13 17 17 N 1.46901 * 109.52175 * 182.44215 * 15 14 13 18 18 C 1.53120 * 109.16363 * 302.34821 * 15 14 13 19 19 H 1.09003 * 109.50092 * 297.71203 * 18 15 14 20 20 C 1.53000 * 109.50401 * 177.59515 * 18 15 14 21 21 C 1.46848 * 111.00200 * 170.71528 * 12 2 1 22 22 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47302 * 299.99824 * 1 2 3 24 24 H 1.08999 * 109.47433 * 60.00120 * 1 2 3 25 25 H 0.96999 * 119.99779 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46416 * 294.17419 * 13 12 2 27 27 H 1.09007 * 109.46271 * 54.14003 * 13 12 2 28 28 H 1.08998 * 109.50618 * 179.12160 * 14 13 12 29 29 H 1.08997 * 109.49941 * 299.24088 * 14 13 12 30 30 H 1.00900 * 111.00356 * 300.00084 * 17 15 14 31 31 H 1.00899 * 110.99832 * 63.95950 * 17 15 14 32 32 H 1.08997 * 109.47396 * 300.19830 * 20 18 15 33 33 H 1.09001 * 109.46946 * 60.20045 * 20 18 15 34 34 H 1.09002 * 109.47302 * 180.19128 * 20 18 15 35 35 H 1.08997 * 109.46315 * 305.85240 * 21 12 2 36 36 H 1.08999 * 109.46069 * 65.82606 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5793 -1.6366 1.1339 6 6 1.7935 -0.1779 2.4798 7 7 1.1277 0.9502 2.5974 8 14 2.4168 -1.0581 4.0049 9 1 3.8959 -1.1727 3.9407 10 1 2.0327 -0.2858 5.2138 11 1 1.8175 -2.4151 4.0729 12 7 2.0197 -0.6925 -1.1993 13 6 1.6504 -2.1136 -1.1742 14 6 2.0472 -2.7687 -2.4991 15 6 3.5569 -2.6180 -2.7054 16 1 4.0872 -3.1383 -1.9077 17 7 3.9349 -3.1935 -4.0030 18 6 3.9218 -1.1312 -2.6792 19 1 3.4218 -0.6192 -3.5014 20 6 5.4368 -0.9744 -2.8246 21 6 3.4707 -0.5236 -1.3490 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.9600 1.3249 3.4762 26 1 2.1698 -2.6093 -0.3540 27 1 0.5738 -2.2066 -1.0311 28 1 1.7871 -3.8269 -2.4741 29 1 1.5176 -2.2825 -3.3184 30 1 3.6992 -4.1736 -4.0464 31 1 3.5076 -2.6848 -4.7624 32 1 5.9358 -1.4882 -2.0030 33 1 5.7575 -1.4073 -3.7722 34 1 5.6963 0.0840 -2.8025 35 1 3.7162 0.5383 -1.3330 36 1 3.9815 -1.0267 -0.5280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251938958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -12.567367 kcal Electronic energy + Delta-G solvation = -15155.844266 eV Core-core repulsion = 12866.986378 eV Total energy + Delta-G solvation = -2288.857888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85841 -35.44413 -32.59883 -32.00196 -30.04885 -28.01769 -25.36021 -25.08531 -22.48079 -21.76325 -19.52187 -19.20338 -16.27464 -15.46243 -15.26597 -14.61788 -14.38457 -13.72097 -13.63920 -13.11197 -12.61566 -12.38477 -12.07176 -11.61541 -11.44969 -11.18010 -10.98832 -10.90028 -10.75631 -10.55745 -10.37759 -10.16677 -9.98819 -9.71968 -9.54185 -9.14415 -8.41671 -8.37159 -7.10069 -5.99444 -4.11020 3.27963 3.33149 3.35631 4.40178 4.76540 4.96956 5.16300 5.27495 5.33649 5.56585 5.68569 5.95254 5.98753 6.10635 6.18254 6.21871 6.31337 6.47882 6.56493 6.60928 6.68138 6.78485 6.93417 6.95766 7.06524 7.21266 7.31815 7.56168 7.58886 7.71362 7.95711 8.17222 8.33926 8.47467 8.99413 9.56445 11.02374 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036946 B = 0.009184 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.675782 B = 3047.968614 C = 3217.474487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.206 3.794 3 H 0.041 0.959 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.538 5.538 13 C 0.065 3.935 14 C -0.149 4.149 15 C 0.095 3.905 16 H 0.074 0.926 17 N -0.844 5.844 18 C -0.080 4.080 19 H 0.067 0.933 20 C -0.135 4.135 21 C 0.070 3.930 22 H 0.026 0.974 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.262 0.738 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.334 0.666 31 H 0.336 0.664 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -5.394 -9.257 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.100 3.900 3 H 0.059 0.941 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.262 5.262 13 C -0.064 4.064 14 C -0.189 4.189 15 C -0.016 4.016 16 H 0.092 0.908 17 N -0.371 5.371 18 C -0.099 4.099 19 H 0.086 0.914 20 C -0.193 4.193 21 C -0.059 4.059 22 H 0.045 0.955 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.718 -4.842 -9.317 11.139 hybrid contribution -0.410 -1.050 1.658 2.005 sum 3.308 -5.892 -7.659 10.214 Atomic orbital electron populations 1.21736 0.98050 0.98860 0.99728 1.19254 0.92049 0.94305 0.84384 0.94088 1.21685 1.35846 1.08696 0.91909 0.92626 1.24921 0.94913 0.94785 0.98851 1.69903 1.40108 1.18826 1.23755 0.86751 0.79319 0.79787 0.82708 1.20351 1.21220 1.20363 1.62408 1.11415 1.10698 1.41704 1.21819 1.00524 0.89893 0.94208 1.22463 0.97284 0.99260 0.99897 1.21534 0.93360 0.95639 0.91098 0.90819 1.58998 1.66901 1.06842 1.04405 1.21190 0.95733 0.94100 0.98908 0.91411 1.21672 0.95353 1.00526 1.01762 1.21879 0.89720 0.99870 0.94436 0.95452 0.90784 0.96526 0.92857 0.94487 0.91428 0.92929 0.92064 0.85428 0.85250 0.93342 0.92092 0.93479 0.91751 0.94625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.93 37.15 0.33 -2.72 16 2 C 0.21 5.18 2.22 -68.87 -0.15 5.03 16 3 H 0.04 1.14 8.00 -51.93 -0.42 0.73 16 4 C -0.54 -14.60 7.17 -34.44 -0.25 -14.85 16 5 H 0.06 1.51 5.85 -52.48 -0.31 1.20 16 6 C 0.07 1.87 5.32 -17.82 -0.09 1.77 16 7 N -0.89 -25.29 11.73 55.43 0.65 -24.64 16 8 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.54 -11.51 4.61 -228.09 -1.05 -12.56 16 13 C 0.06 1.27 4.79 -3.83 -0.02 1.25 16 14 C -0.15 -2.32 5.67 -26.65 -0.15 -2.47 16 15 C 0.09 1.41 2.73 -67.59 -0.18 1.22 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 N -0.84 -10.22 8.62 -4.56 -0.04 -10.26 16 18 C -0.08 -1.27 2.51 -90.54 -0.23 -1.50 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C -0.14 -1.93 9.06 37.16 0.34 -1.60 16 21 C 0.07 1.38 4.46 -3.83 -0.02 1.36 16 22 H 0.03 0.63 6.41 -51.93 -0.33 0.30 16 23 H 0.07 1.95 6.51 -51.93 -0.34 1.62 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.04 0.79 6.32 -51.93 -0.33 0.47 16 27 H 0.07 1.37 6.18 -51.92 -0.32 1.05 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.33 3.52 9.04 -39.29 -0.36 3.16 16 31 H 0.34 3.75 8.98 -39.29 -0.35 3.39 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.82 7.69 -51.93 -0.40 0.42 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.30 8.02 -51.93 -0.42 0.88 16 36 H 0.04 0.77 7.36 -51.93 -0.38 0.38 16 LS Contribution 274.37 15.07 4.13 4.13 Total: -1.00 -27.56 274.37 -7.79 -35.36 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.04 Total: 4.20 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.43 Total: -12.50 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.44 Total: -47.46 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.56 -7.79 -35.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251938958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.790 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds