Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47068 * 2 1 4 4 C 1.50700 * 109.47190 * 119.99766 * 2 1 3 5 5 H 1.08006 * 120.00259 * 114.59589 * 4 2 1 6 6 C 1.37886 * 120.00066 * 294.59969 * 4 2 1 7 7 N 1.31513 * 119.99842 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99864 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47798 * 59.99808 * 8 6 4 10 10 H 1.48503 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46965 * 299.99417 * 8 6 4 12 12 N 1.46894 * 109.47479 * 239.99611 * 2 1 3 13 13 C 1.46843 * 111.00342 * 294.92700 * 12 2 1 14 14 C 1.53040 * 109.52896 * 174.15700 * 13 12 2 15 15 C 1.53114 * 109.27464 * 59.17762 * 14 13 12 16 16 H 1.09005 * 109.52272 * 62.31836 * 15 14 13 17 17 N 1.46901 * 109.52175 * 182.44215 * 15 14 13 18 18 C 1.53120 * 109.16363 * 302.34821 * 15 14 13 19 19 H 1.09003 * 109.50092 * 297.71203 * 18 15 14 20 20 C 1.53000 * 109.50401 * 177.59515 * 18 15 14 21 21 C 1.46848 * 111.00200 * 170.71528 * 12 2 1 22 22 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47302 * 299.99824 * 1 2 3 24 24 H 1.08999 * 109.47433 * 60.00120 * 1 2 3 25 25 H 0.96999 * 119.99779 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46416 * 294.17419 * 13 12 2 27 27 H 1.09007 * 109.46271 * 54.14003 * 13 12 2 28 28 H 1.08998 * 109.50618 * 179.12160 * 14 13 12 29 29 H 1.08997 * 109.49941 * 299.24088 * 14 13 12 30 30 H 1.00900 * 111.00356 * 300.00084 * 17 15 14 31 31 H 1.00899 * 110.99832 * 63.95950 * 17 15 14 32 32 H 1.08997 * 109.47396 * 300.19830 * 20 18 15 33 33 H 1.09001 * 109.46946 * 60.20045 * 20 18 15 34 34 H 1.09002 * 109.47302 * 180.19128 * 20 18 15 35 35 H 1.08997 * 109.46315 * 305.85240 * 21 12 2 36 36 H 1.08999 * 109.46069 * 65.82606 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5793 -1.6366 1.1339 6 6 1.7935 -0.1779 2.4798 7 7 1.1277 0.9502 2.5974 8 14 2.4168 -1.0581 4.0049 9 1 3.8959 -1.1727 3.9407 10 1 2.0327 -0.2858 5.2138 11 1 1.8175 -2.4151 4.0729 12 7 2.0197 -0.6925 -1.1993 13 6 1.6504 -2.1136 -1.1742 14 6 2.0472 -2.7687 -2.4991 15 6 3.5569 -2.6180 -2.7054 16 1 4.0872 -3.1383 -1.9077 17 7 3.9349 -3.1935 -4.0030 18 6 3.9218 -1.1312 -2.6792 19 1 3.4218 -0.6192 -3.5014 20 6 5.4368 -0.9744 -2.8246 21 6 3.4707 -0.5236 -1.3490 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.9600 1.3249 3.4762 26 1 2.1698 -2.6093 -0.3540 27 1 0.5738 -2.2066 -1.0311 28 1 1.7871 -3.8269 -2.4741 29 1 1.5176 -2.2825 -3.3184 30 1 3.6992 -4.1736 -4.0464 31 1 3.5076 -2.6848 -4.7624 32 1 5.9358 -1.4882 -2.0030 33 1 5.7575 -1.4073 -3.7722 34 1 5.6963 0.0840 -2.8025 35 1 3.7162 0.5383 -1.3330 36 1 3.9815 -1.0267 -0.5280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251938958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -32.085817 kcal Electronic energy + Delta-G solvation = -15156.690649 eV Core-core repulsion = 12866.986378 eV Total energy + Delta-G solvation = -2289.704271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35868 -37.06201 -34.45863 -33.36184 -31.69634 -29.59840 -27.22020 -26.72961 -24.05992 -23.19392 -21.22002 -20.73560 -18.26198 -17.08029 -16.61376 -16.19117 -16.00666 -15.25263 -15.14738 -14.79086 -14.12973 -13.89097 -13.47201 -13.38560 -13.00105 -12.85068 -12.72947 -12.69486 -12.43821 -12.28686 -11.94463 -11.85509 -11.65173 -11.31251 -11.21790 -11.00172 -10.51757 -9.46956 -8.94595 -8.07822 -6.28751 1.36270 1.36615 1.44330 2.37986 3.13481 3.36466 3.69578 3.83807 4.01705 4.25539 4.34026 4.56740 4.63972 4.72328 4.78462 4.85323 4.94102 4.99116 5.02952 5.09966 5.14128 5.24330 5.26891 5.30007 5.44402 5.47609 5.58509 5.67814 5.92624 6.17312 6.29173 6.36192 6.66379 6.71866 6.92363 7.42232 8.90236 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036946 B = 0.009184 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.675782 B = 3047.968614 C = 3217.474487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.208 3.792 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.536 5.536 13 C 0.065 3.935 14 C -0.138 4.138 15 C 0.104 3.896 16 H 0.060 0.940 17 N -0.836 5.836 18 C -0.072 4.072 19 H 0.073 0.927 20 C -0.129 4.129 21 C 0.072 3.928 22 H 0.033 0.967 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.347 0.653 31 H 0.345 0.655 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 -6.829 -10.502 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.260 5.260 13 C -0.064 4.064 14 C -0.178 4.178 15 C -0.008 4.008 16 H 0.079 0.921 17 N -0.365 5.365 18 C -0.091 4.091 19 H 0.091 0.909 20 C -0.186 4.186 21 C -0.057 4.057 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 4.264 -6.296 -10.587 13.034 hybrid contribution -0.577 -0.589 2.009 2.172 sum 3.687 -6.885 -8.577 11.600 Atomic orbital electron populations 1.21558 0.97436 0.99002 0.99187 1.19064 0.92530 0.92741 0.85564 0.97627 1.21889 1.35584 1.08486 0.92878 0.93191 1.25652 0.95216 0.95501 1.01670 1.70021 1.41059 1.19993 1.24342 0.85790 0.78754 0.78835 0.79361 1.20057 1.20718 1.19769 1.62382 1.12457 1.11758 1.39380 1.21853 0.99728 0.88649 0.96128 1.22401 0.97882 1.00170 0.97301 1.21314 0.92562 0.94675 0.92279 0.92145 1.58896 1.66740 1.07764 1.03132 1.21102 0.96889 0.94802 0.96319 0.90868 1.21618 0.93841 1.00921 1.02259 1.21904 0.88457 0.99235 0.96093 0.94839 0.93245 0.95047 0.92841 0.96738 0.92260 0.90660 0.91255 0.83920 0.84147 0.93985 0.90535 0.93100 0.93036 0.97011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.58 8.93 71.98 0.64 -4.94 16 2 C 0.21 10.71 2.22 44.17 0.10 10.81 16 3 H 0.01 0.33 8.00 -2.39 -0.02 0.31 16 4 C -0.55 -30.17 7.17 25.60 0.18 -29.99 16 5 H 0.05 2.76 5.85 -2.91 -0.02 2.74 16 6 C 0.02 1.08 5.32 84.66 0.45 1.53 16 7 N -0.92 -53.15 11.73 21.45 0.25 -52.89 16 8 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 N -0.54 -23.04 4.61 -875.54 -4.04 -27.07 16 13 C 0.07 2.53 4.79 86.33 0.41 2.94 16 14 C -0.14 -3.94 5.67 30.65 0.17 -3.77 16 15 C 0.10 2.83 2.73 44.99 0.12 2.95 16 16 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 17 N -0.84 -17.28 8.62 -168.35 -1.45 -18.73 16 18 C -0.07 -2.17 2.51 -10.74 -0.03 -2.20 16 19 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 20 C -0.13 -3.43 9.06 71.98 0.65 -2.78 16 21 C 0.07 2.86 4.46 86.33 0.39 3.25 16 22 H 0.03 1.55 6.41 -2.38 -0.02 1.54 16 23 H 0.05 2.66 6.51 -2.39 -0.02 2.64 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.01 0.62 6.32 -2.39 -0.02 0.61 16 27 H 0.06 2.36 6.18 -2.38 -0.01 2.35 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.35 5.97 9.04 -89.69 -0.81 5.16 16 31 H 0.35 6.33 8.98 -89.69 -0.81 5.53 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.83 7.69 -2.39 -0.02 1.81 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.05 2.13 8.02 -2.39 -0.02 2.11 16 36 H 0.01 0.51 7.36 -2.39 -0.02 0.50 16 Total: -1.00 -59.24 274.37 -0.67 -59.91 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.55 Total: 14.95 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 3.10 Total: -22.18 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -5.23 Total: -98.70 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -59.24 -0.67 -59.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251938958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.825 kcal (2) G-P(sol) polarization free energy of solvation -59.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds