Wall clock time and date at job start Mon Mar 30 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46953 * 2 1 4 4 C 1.50698 * 109.46653 * 239.99951 * 2 1 3 5 5 H 1.07999 * 119.99762 * 239.99513 * 4 2 1 6 6 C 1.37871 * 120.00404 * 60.00275 * 4 2 1 7 7 N 1.31524 * 119.99873 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00466 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47266 * 59.99506 * 8 6 4 10 10 H 1.48504 * 109.47515 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47020 * 299.99544 * 8 6 4 12 12 N 1.46899 * 109.47101 * 120.00088 * 2 1 3 13 13 C 1.46847 * 110.99862 * 176.04779 * 12 2 1 14 14 C 1.53044 * 109.51335 * 174.15436 * 13 12 2 15 15 C 1.53119 * 109.27589 * 59.18419 * 14 13 12 16 16 H 1.08993 * 109.52284 * 62.25342 * 15 14 13 17 17 N 1.46902 * 109.51729 * 182.37745 * 15 14 13 18 18 C 1.53120 * 109.16202 * 302.34077 * 15 14 13 19 19 H 1.08996 * 109.50004 * 297.72216 * 18 15 14 20 20 C 1.53001 * 109.50234 * 177.59979 * 18 15 14 21 21 C 1.46847 * 110.99299 * 51.83937 * 12 2 1 22 22 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46773 * 299.99963 * 1 2 3 24 24 H 1.08997 * 109.46925 * 60.00039 * 1 2 3 25 25 H 0.96997 * 119.99738 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46448 * 54.14158 * 13 12 2 27 27 H 1.08994 * 109.45958 * 294.16523 * 13 12 2 28 28 H 1.09000 * 109.49745 * 179.12223 * 14 13 12 29 29 H 1.08996 * 109.50070 * 299.23917 * 14 13 12 30 30 H 1.00904 * 111.00037 * 299.99674 * 17 15 14 31 31 H 1.00903 * 111.00257 * 63.95157 * 17 15 14 32 32 H 1.08995 * 109.46970 * 60.00250 * 20 18 15 33 33 H 1.08998 * 109.46590 * 180.02562 * 20 18 15 34 34 H 1.09004 * 109.46555 * 299.99848 * 20 18 15 35 35 H 1.09005 * 109.46836 * 65.83946 * 21 12 2 36 36 H 1.08994 * 109.46332 * 305.85962 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8267 -0.4200 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 3.4846 -0.7945 1.1870 14 6 3.9670 -1.3877 2.5128 15 6 3.3419 -2.7723 2.7041 16 1 3.6730 -3.4351 1.9047 17 7 3.7563 -3.3228 4.0015 18 6 1.8165 -2.6450 2.6646 19 1 1.4827 -2.0133 3.4877 20 6 1.1846 -4.0322 2.7952 21 6 1.3964 -2.0153 1.3345 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1613 -3.4844 26 1 3.9166 0.1975 1.0544 27 1 3.7968 -1.4393 0.3656 28 1 5.0532 -1.4777 2.4972 29 1 3.6669 -0.7363 3.3335 30 1 4.7601 -3.4117 4.0527 31 1 3.4038 -2.7610 4.7620 32 1 1.4869 -4.4816 3.7411 33 1 0.0988 -3.9409 2.7665 34 1 1.5178 -4.6623 1.9705 35 1 1.7187 -2.6544 0.5123 36 1 0.3119 -1.9100 1.3090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251938959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:44 Heat of formation + Delta-G solvation = -29.456402 kcal Electronic energy + Delta-G solvation = -15192.537603 eV Core-core repulsion = 12902.947352 eV Total energy + Delta-G solvation = -2289.590251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39070 -37.06788 -34.47561 -33.34035 -31.91258 -29.01654 -27.69098 -26.74715 -24.25282 -22.62792 -21.44158 -20.74502 -18.32963 -17.13632 -16.58119 -16.26913 -15.81571 -15.26065 -14.99091 -14.91056 -14.23498 -13.98636 -13.44662 -13.40020 -13.01809 -12.92705 -12.78210 -12.68068 -12.19498 -12.12541 -11.95011 -11.91525 -11.57477 -11.51806 -11.18426 -10.93548 -10.49908 -9.48219 -8.95272 -8.05828 -6.28898 1.36200 1.36769 1.44432 2.37865 3.12768 3.37199 3.69491 3.84657 4.01308 4.26191 4.33000 4.56590 4.64046 4.73911 4.77226 4.89850 4.92962 4.99946 5.05081 5.06600 5.10729 5.23078 5.27263 5.31332 5.45093 5.51141 5.56972 5.69751 5.97537 6.17229 6.29380 6.36804 6.66503 6.71389 6.91595 7.42207 8.89726 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037934 B = 0.009132 C = 0.008818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.944846 B = 3065.446199 C = 3174.681485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.209 3.791 3 H 0.004 0.996 4 C -0.549 4.549 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.537 5.537 13 C 0.068 3.932 14 C -0.136 4.136 15 C 0.103 3.897 16 H 0.060 0.940 17 N -0.836 5.836 18 C -0.074 4.074 19 H 0.073 0.927 20 C -0.128 4.128 21 C 0.068 3.932 22 H 0.033 0.967 23 H 0.029 0.971 24 H 0.059 0.941 25 H 0.263 0.737 26 H 0.049 0.951 27 H 0.016 0.984 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.347 0.653 31 H 0.345 0.655 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -6.709 10.423 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.101 3.899 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.261 5.261 13 C -0.062 4.062 14 C -0.176 4.176 15 C -0.009 4.009 16 H 0.078 0.922 17 N -0.365 5.365 18 C -0.093 4.093 19 H 0.091 0.909 20 C -0.186 4.186 21 C -0.060 4.060 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.203 -6.965 10.498 12.999 hybrid contribution 0.942 0.471 -1.980 2.243 sum 4.145 -6.493 8.518 11.485 Atomic orbital electron populations 1.21699 0.97380 0.99216 0.99797 1.19063 0.92579 0.92657 0.85569 0.97814 1.21872 1.31618 1.12601 0.92739 0.93353 1.25639 0.95141 0.95587 1.01631 1.69995 1.37268 1.23850 1.24117 0.85782 0.78708 0.78846 0.79345 1.19934 1.20650 1.19972 1.62404 1.05586 1.18626 1.39451 1.21785 0.88926 0.99109 0.96352 1.22390 1.00125 0.98005 0.97100 1.21318 0.94568 0.92659 0.92306 0.92167 1.58902 1.17703 1.56819 1.03070 1.21129 0.94574 0.97026 0.96590 0.90908 1.21616 0.99651 0.95129 1.02222 1.22012 0.99010 0.89249 0.95763 0.94778 0.95196 0.92182 0.92821 0.93225 0.96601 0.90682 0.91271 0.83945 0.84148 0.90601 0.92985 0.94015 0.97227 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.47 71.98 0.61 -5.47 16 2 C 0.21 10.76 2.49 44.17 0.11 10.87 16 3 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 4 C -0.55 -30.22 7.21 25.60 0.18 -30.04 16 5 H 0.05 2.68 5.84 -2.91 -0.02 2.66 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -52.74 11.32 21.45 0.24 -52.50 16 8 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.54 -23.18 4.71 -875.49 -4.12 -27.30 16 13 C 0.07 2.67 4.97 86.33 0.43 3.09 16 14 C -0.14 -3.95 5.67 30.65 0.17 -3.78 16 15 C 0.10 2.84 2.73 44.99 0.12 2.96 16 16 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 17 N -0.84 -17.36 8.62 -168.35 -1.45 -18.81 16 18 C -0.07 -2.22 2.52 -10.74 -0.03 -2.25 16 19 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 20 C -0.13 -3.39 9.07 71.98 0.65 -2.74 16 21 C 0.07 2.67 4.02 86.33 0.35 3.02 16 22 H 0.03 1.61 6.19 -2.39 -0.01 1.59 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 27 H 0.02 0.69 6.46 -2.39 -0.02 0.67 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.35 6.02 9.04 -89.69 -0.81 5.20 16 31 H 0.35 6.37 8.98 -89.69 -0.81 5.56 16 32 H 0.08 1.80 7.68 -2.39 -0.02 1.78 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.01 0.41 7.17 -2.38 -0.02 0.40 16 36 H 0.07 2.62 5.84 -2.39 -0.01 2.61 16 Total: -1.00 -59.07 272.79 -0.81 -59.87 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.55 Total: 15.56 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 3.05 Total: -22.79 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -5.33 Total: -98.62 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.07 -0.81 -59.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251938959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.415 kcal (2) G-P(sol) polarization free energy of solvation -59.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds