Wall clock time and date at job start Mon Mar 30 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47172 * 2 1 4 4 C 1.50697 * 109.47037 * 240.00164 * 2 1 3 5 5 H 1.08007 * 120.00169 * 245.56625 * 4 2 1 6 6 C 1.37882 * 120.00080 * 65.57149 * 4 2 1 7 7 N 1.31508 * 119.99926 * 8.38947 * 6 4 2 8 8 Si 1.86805 * 119.99824 * 188.39001 * 6 4 2 9 9 H 1.48496 * 109.46973 * 84.99409 * 8 6 4 10 10 H 1.48500 * 109.46726 * 204.99219 * 8 6 4 11 11 H 1.48498 * 109.47130 * 324.99159 * 8 6 4 12 12 N 1.46899 * 109.47617 * 120.00112 * 2 1 3 13 13 C 1.46848 * 110.99862 * 295.00583 * 12 2 1 14 14 C 1.53035 * 109.52606 * 174.15803 * 13 12 2 15 15 H 1.08999 * 109.49774 * 299.23589 * 14 13 12 16 16 C 1.53000 * 109.50667 * 179.15283 * 14 13 12 17 17 C 1.53124 * 109.27980 * 59.17168 * 14 13 12 18 18 C 1.53115 * 109.15975 * 302.35116 * 17 14 13 19 19 H 1.09005 * 109.50287 * 297.66917 * 18 17 14 20 20 N 1.46908 * 109.50158 * 177.59390 * 18 17 14 21 21 C 1.46844 * 111.00662 * 170.78973 * 12 2 1 22 22 H 1.09006 * 109.47015 * 305.10886 * 1 2 3 23 23 H 1.09000 * 109.47488 * 65.10939 * 1 2 3 24 24 H 1.09001 * 109.47320 * 185.11262 * 1 2 3 25 25 H 0.97001 * 120.00165 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.45694 * 294.17124 * 13 12 2 27 27 H 1.08995 * 109.46578 * 54.13476 * 13 12 2 28 28 H 1.09000 * 109.46902 * 59.99799 * 16 14 13 29 29 H 1.08996 * 109.47078 * 179.97438 * 16 14 13 30 30 H 1.08994 * 109.47056 * 300.00073 * 16 14 13 31 31 H 1.09003 * 109.52119 * 62.25384 * 17 14 13 32 32 H 1.09000 * 109.52313 * 182.38097 * 17 14 13 33 33 H 1.00904 * 110.99934 * 179.97438 * 20 18 17 34 34 H 1.00902 * 110.99734 * 303.95289 * 20 18 17 35 35 H 1.09005 * 109.45804 * 305.85920 * 21 12 2 36 36 H 1.09003 * 109.45956 * 65.82047 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5770 -1.6380 -1.1340 6 6 1.7964 -0.1761 -2.4795 7 7 1.2817 1.0288 -2.5928 8 14 2.2081 -1.1638 -4.0107 9 1 1.0740 -2.0647 -4.3383 10 1 2.4492 -0.2382 -5.1467 11 1 3.4283 -1.9735 -3.7643 12 7 2.0197 -0.6925 1.1994 13 6 1.6488 0.0388 2.4176 14 6 2.0457 -0.7812 3.6473 15 1 1.5172 -1.7344 3.6350 16 6 1.6782 -0.0095 4.9163 17 6 3.5558 -1.0336 3.6207 18 6 3.9222 -1.7533 2.3199 19 1 3.4237 -2.7221 2.2871 20 7 5.3771 -1.9480 2.2602 21 6 3.4710 -0.9051 1.1287 22 1 -0.3633 0.5911 0.8407 23 1 -0.3634 0.4325 -0.9322 24 1 -0.3634 -1.0236 0.0916 25 1 1.1155 1.4045 -3.4715 26 1 2.1671 0.9975 2.4376 27 1 0.5721 0.2081 2.4260 28 1 0.6036 0.1723 4.9325 29 1 1.9607 -0.5942 5.7917 30 1 2.2081 0.9429 4.9286 31 1 4.0851 -0.0821 3.6722 32 1 3.8365 -1.6531 4.4725 33 1 5.6439 -2.4218 1.4102 34 1 5.8636 -1.0688 2.3525 35 1 3.7176 -1.4214 0.2009 36 1 3.9807 0.0581 1.1548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252119792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:27 Heat of formation + Delta-G solvation = -13.077847 kcal Electronic energy + Delta-G solvation = -15059.357836 eV Core-core repulsion = 12770.477813 eV Total energy + Delta-G solvation = -2288.880024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.82644 -34.97277 -33.76074 -32.19814 -29.18119 -27.63121 -26.55382 -24.71414 -23.29423 -20.75128 -19.72882 -19.23602 -16.27196 -15.64812 -15.40832 -14.49921 -14.22369 -13.87920 -13.76066 -13.22857 -12.75135 -12.46684 -12.22874 -11.76684 -11.59031 -11.39170 -10.95839 -10.82232 -10.67831 -10.51756 -10.44493 -10.19033 -10.12738 -9.86131 -9.73932 -8.80912 -8.47134 -8.34331 -7.16128 -6.06635 -4.08240 3.28743 3.35105 3.37235 4.38154 4.69731 4.97352 5.25035 5.26288 5.28311 5.47566 5.57854 5.81184 5.87499 6.00608 6.04512 6.07335 6.20047 6.31467 6.38740 6.49042 6.58174 6.73752 6.78478 6.83495 7.00974 7.13070 7.37976 7.45577 7.68103 7.72838 7.79202 8.12680 8.27437 8.61061 8.98982 9.55979 11.02499 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035724 B = 0.009536 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.595849 B = 2935.581899 C = 3543.195011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.003 0.997 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.058 3.942 14 C -0.089 4.089 15 H 0.075 0.925 16 C -0.143 4.143 17 C -0.102 4.102 18 C 0.087 3.913 19 H 0.083 0.917 20 N -0.845 5.845 21 C 0.037 3.963 22 H 0.011 0.989 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.340 0.660 34 H 0.333 0.667 35 H 0.086 0.914 36 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -2.267 9.770 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.256 5.256 13 C -0.070 4.070 14 C -0.109 4.109 15 H 0.094 0.906 16 C -0.200 4.200 17 C -0.140 4.140 18 C -0.025 4.025 19 H 0.101 0.899 20 N -0.373 5.373 21 C -0.093 4.093 22 H 0.030 0.970 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.556 -3.035 10.295 11.033 hybrid contribution 0.467 1.061 -1.890 2.217 sum 3.023 -1.973 8.405 9.148 Atomic orbital electron populations 1.21723 0.98018 0.98890 0.99591 1.19227 0.91973 0.92472 0.85900 0.97893 1.21126 1.35642 1.07908 0.90051 0.91931 1.24946 0.95412 0.94688 0.99035 1.69965 1.44732 1.14443 1.23780 0.86594 0.78789 0.79942 0.82564 1.20488 1.21404 1.20028 1.61978 1.11434 1.49564 1.02617 1.22107 1.00390 0.94150 0.90400 1.21151 0.95682 0.99710 0.94313 0.90630 1.21768 1.01176 0.99976 0.97129 1.21590 0.95510 0.99601 0.97272 1.21576 0.87264 0.99330 0.94287 0.89864 1.59117 1.06452 1.27521 1.44187 1.22791 0.89711 0.97871 0.98960 0.97017 0.91395 0.94451 0.92939 0.96387 0.91157 0.92746 0.92959 0.93104 0.92947 0.92037 0.84789 0.85509 0.89601 0.96726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 8.86 37.15 0.33 -2.68 16 2 C 0.21 5.34 1.94 -68.87 -0.13 5.21 16 3 H 0.00 0.10 8.08 -51.93 -0.42 -0.32 16 4 C -0.51 -13.86 7.65 -34.44 -0.26 -14.12 16 5 H 0.06 1.70 6.29 -52.48 -0.33 1.37 16 6 C 0.06 1.68 5.18 -17.82 -0.09 1.59 16 7 N -0.89 -25.58 12.11 55.43 0.67 -24.91 16 8 Si 0.89 21.26 29.55 -169.99 -5.02 16.24 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.53 -11.45 4.52 -228.09 -1.03 -12.48 16 13 C 0.06 1.08 4.57 -3.83 -0.02 1.06 16 14 C -0.09 -1.35 2.88 -90.54 -0.26 -1.61 16 15 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -1.78 9.20 37.16 0.34 -1.43 16 17 C -0.10 -1.51 4.83 -26.61 -0.13 -1.63 16 18 C 0.09 1.41 3.41 -67.63 -0.23 1.18 16 19 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 20 N -0.85 -11.92 9.26 -4.60 -0.04 -11.96 16 21 C 0.04 0.73 4.72 -3.84 -0.02 0.71 16 22 H 0.01 0.24 6.65 -51.93 -0.35 -0.10 16 23 H 0.07 1.79 6.77 -51.93 -0.35 1.44 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 1.31 6.29 -51.93 -0.33 0.99 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.34 4.54 9.04 -39.29 -0.36 4.18 16 34 H 0.33 4.37 8.98 -39.29 -0.35 4.02 16 35 H 0.09 1.86 5.84 -51.93 -0.30 1.56 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -28.15 277.65 -7.86 -36.01 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.15 Total: 4.65 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.47 Total: -11.73 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.40 Total: -49.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.15 -7.86 -36.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252119792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.931 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds