Wall clock time and date at job start Mon Mar 30 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47172 * 2 1 4 4 C 1.50697 * 109.47037 * 240.00164 * 2 1 3 5 5 H 1.08007 * 120.00169 * 245.56625 * 4 2 1 6 6 C 1.37882 * 120.00080 * 65.57149 * 4 2 1 7 7 N 1.31508 * 119.99926 * 8.38947 * 6 4 2 8 8 Si 1.86805 * 119.99824 * 188.39001 * 6 4 2 9 9 H 1.48496 * 109.46973 * 84.99409 * 8 6 4 10 10 H 1.48500 * 109.46726 * 204.99219 * 8 6 4 11 11 H 1.48498 * 109.47130 * 324.99159 * 8 6 4 12 12 N 1.46899 * 109.47617 * 120.00112 * 2 1 3 13 13 C 1.46848 * 110.99862 * 295.00583 * 12 2 1 14 14 C 1.53035 * 109.52606 * 174.15803 * 13 12 2 15 15 H 1.08999 * 109.49774 * 299.23589 * 14 13 12 16 16 C 1.53000 * 109.50667 * 179.15283 * 14 13 12 17 17 C 1.53124 * 109.27980 * 59.17168 * 14 13 12 18 18 C 1.53115 * 109.15975 * 302.35116 * 17 14 13 19 19 H 1.09005 * 109.50287 * 297.66917 * 18 17 14 20 20 N 1.46908 * 109.50158 * 177.59390 * 18 17 14 21 21 C 1.46844 * 111.00662 * 170.78973 * 12 2 1 22 22 H 1.09006 * 109.47015 * 305.10886 * 1 2 3 23 23 H 1.09000 * 109.47488 * 65.10939 * 1 2 3 24 24 H 1.09001 * 109.47320 * 185.11262 * 1 2 3 25 25 H 0.97001 * 120.00165 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.45694 * 294.17124 * 13 12 2 27 27 H 1.08995 * 109.46578 * 54.13476 * 13 12 2 28 28 H 1.09000 * 109.46902 * 59.99799 * 16 14 13 29 29 H 1.08996 * 109.47078 * 179.97438 * 16 14 13 30 30 H 1.08994 * 109.47056 * 300.00073 * 16 14 13 31 31 H 1.09003 * 109.52119 * 62.25384 * 17 14 13 32 32 H 1.09000 * 109.52313 * 182.38097 * 17 14 13 33 33 H 1.00904 * 110.99934 * 179.97438 * 20 18 17 34 34 H 1.00902 * 110.99734 * 303.95289 * 20 18 17 35 35 H 1.09005 * 109.45804 * 305.85920 * 21 12 2 36 36 H 1.09003 * 109.45956 * 65.82047 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5770 -1.6380 -1.1340 6 6 1.7964 -0.1761 -2.4795 7 7 1.2817 1.0288 -2.5928 8 14 2.2081 -1.1638 -4.0107 9 1 1.0740 -2.0647 -4.3383 10 1 2.4492 -0.2382 -5.1467 11 1 3.4283 -1.9735 -3.7643 12 7 2.0197 -0.6925 1.1994 13 6 1.6488 0.0388 2.4176 14 6 2.0457 -0.7812 3.6473 15 1 1.5172 -1.7344 3.6350 16 6 1.6782 -0.0095 4.9163 17 6 3.5558 -1.0336 3.6207 18 6 3.9222 -1.7533 2.3199 19 1 3.4237 -2.7221 2.2871 20 7 5.3771 -1.9480 2.2602 21 6 3.4710 -0.9051 1.1287 22 1 -0.3633 0.5911 0.8407 23 1 -0.3634 0.4325 -0.9322 24 1 -0.3634 -1.0236 0.0916 25 1 1.1155 1.4045 -3.4715 26 1 2.1671 0.9975 2.4376 27 1 0.5721 0.2081 2.4260 28 1 0.6036 0.1723 4.9325 29 1 1.9607 -0.5942 5.7917 30 1 2.2081 0.9429 4.9286 31 1 4.0851 -0.0821 3.6722 32 1 3.8365 -1.6531 4.4725 33 1 5.6439 -2.4218 1.4102 34 1 5.8636 -1.0688 2.3525 35 1 3.7176 -1.4214 0.2009 36 1 3.9807 0.0581 1.1548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252119792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:26 Heat of formation + Delta-G solvation = -33.183170 kcal Electronic energy + Delta-G solvation = -15060.229668 eV Core-core repulsion = 12770.477813 eV Total energy + Delta-G solvation = -2289.751856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33045 -36.68970 -35.06053 -34.09679 -30.97044 -29.04582 -28.04569 -26.55187 -24.93566 -22.08469 -21.55296 -20.67527 -18.35430 -17.24627 -16.80028 -16.15616 -15.82075 -15.43914 -15.22056 -14.69472 -14.27481 -14.16173 -13.58601 -13.46515 -13.05538 -12.83229 -12.81406 -12.51642 -12.38305 -12.25856 -12.12130 -11.96430 -11.51485 -11.40503 -11.23875 -10.75419 -10.58137 -9.64194 -8.96286 -8.18468 -6.27098 1.38675 1.40920 1.49318 2.38712 3.12238 3.23652 3.63390 3.95109 4.01595 4.18934 4.22835 4.42055 4.65128 4.68676 4.73699 4.77630 4.84756 4.90926 4.94839 4.99719 5.04579 5.20668 5.21637 5.33718 5.36586 5.43105 5.56739 5.67396 5.72648 6.10801 6.18690 6.38877 6.56876 6.74924 6.89186 7.41452 8.90544 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035724 B = 0.009536 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.595849 B = 2935.581899 C = 3543.195011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.039 1.039 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.535 5.535 13 C 0.057 3.943 14 C -0.082 4.082 15 H 0.075 0.925 16 C -0.137 4.137 17 C -0.096 4.096 18 C 0.099 3.901 19 H 0.077 0.923 20 N -0.836 5.836 21 C 0.042 3.958 22 H 0.031 0.969 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.262 0.738 26 H 0.007 0.993 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.345 0.655 34 H 0.341 0.659 35 H 0.062 0.938 36 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -3.400 11.032 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.022 1.022 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.192 1.192 12 N -0.259 5.259 13 C -0.071 4.071 14 C -0.102 4.102 15 H 0.093 0.907 16 C -0.195 4.195 17 C -0.134 4.134 18 C -0.013 4.013 19 H 0.095 0.905 20 N -0.364 5.364 21 C -0.089 4.089 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.025 0.975 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 3.071 -4.178 11.578 12.686 hybrid contribution 0.334 1.443 -2.259 2.701 sum 3.405 -2.734 9.319 10.292 Atomic orbital electron populations 1.21543 0.97261 0.99146 0.99071 1.19049 0.92584 0.90302 0.87433 1.02191 1.21390 1.35642 1.07835 0.91123 0.92221 1.25739 0.95357 0.95545 1.02040 1.70087 1.45727 1.15843 1.24448 0.85574 0.78831 0.78525 0.78754 1.19916 1.21069 1.19209 1.61968 1.12494 1.49152 1.02334 1.22222 1.00108 0.94172 0.90632 1.21121 0.95969 0.99355 0.93731 0.90664 1.21724 1.01618 0.99923 0.96186 1.21568 0.95150 0.99810 0.96886 1.21431 0.88341 0.98189 0.93367 0.90461 1.59120 1.05026 1.27896 1.44391 1.22816 0.88636 0.97476 0.99924 0.95013 0.93937 0.94061 0.92901 0.97495 0.91439 0.92216 0.90756 0.92976 0.92818 0.89944 0.84246 0.84648 0.91981 0.98255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 8.86 71.98 0.64 -4.88 16 2 C 0.21 11.14 1.94 44.17 0.09 11.22 16 3 H -0.04 -2.35 8.08 -2.38 -0.02 -2.37 16 4 C -0.52 -28.98 7.65 25.60 0.20 -28.78 16 5 H 0.06 3.29 6.29 -2.91 -0.02 3.27 16 6 C 0.01 0.68 5.18 84.66 0.44 1.12 16 7 N -0.92 -54.14 12.11 21.45 0.26 -53.88 16 8 Si 0.96 43.89 29.55 68.60 2.03 45.92 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 N -0.53 -23.24 4.52 -875.54 -3.95 -27.19 16 13 C 0.06 2.08 4.57 86.32 0.39 2.48 16 14 C -0.08 -2.32 2.88 -10.74 -0.03 -2.35 16 15 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 16 C -0.14 -2.99 9.20 71.98 0.66 -2.32 16 17 C -0.10 -2.60 4.83 30.67 0.15 -2.45 16 18 C 0.10 3.07 3.41 44.96 0.15 3.22 16 19 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 20 N -0.84 -22.02 9.26 -168.46 -1.56 -23.58 16 21 C 0.04 1.67 4.72 86.32 0.41 2.08 16 22 H 0.03 1.38 6.65 -2.38 -0.02 1.36 16 23 H 0.04 2.28 6.77 -2.39 -0.02 2.27 16 24 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.07 2.48 6.29 -2.39 -0.02 2.46 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.34 8.69 9.04 -89.69 -0.81 7.88 16 34 H 0.34 8.31 8.98 -89.69 -0.81 7.50 16 35 H 0.06 2.74 5.84 -2.38 -0.01 2.73 16 36 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -60.76 277.65 -0.69 -61.46 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -0.56 Total: 17.94 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 3.09 Total: -20.67 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -5.25 Total: -104.65 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -60.76 -0.69 -61.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252119792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.274 kcal (2) G-P(sol) polarization free energy of solvation -60.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds