Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46845 * 111.00228 * 300.25602 * 12 2 1 14 14 C 1.53035 * 109.52481 * 174.16105 * 13 12 2 15 15 H 1.08998 * 109.50149 * 299.23702 * 14 13 12 16 16 C 1.53004 * 109.53454 * 179.14072 * 14 13 12 17 17 C 1.53112 * 109.27932 * 59.18098 * 14 13 12 18 18 C 1.53123 * 109.16087 * 302.34351 * 17 14 13 19 19 H 1.08990 * 109.53824 * 177.61212 * 18 17 14 20 20 N 1.46901 * 109.50394 * 297.71618 * 18 17 14 21 21 C 1.46847 * 111.00130 * 176.04435 * 12 2 1 22 22 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 23 23 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46017 * 294.18014 * 13 12 2 27 27 H 1.09002 * 109.46059 * 54.13963 * 13 12 2 28 28 H 1.08997 * 109.46974 * 300.17528 * 16 14 13 29 29 H 1.08995 * 109.47384 * 60.17737 * 16 14 13 30 30 H 1.08997 * 109.46723 * 180.17582 * 16 14 13 31 31 H 1.08996 * 109.52615 * 182.44380 * 17 14 13 32 32 H 1.09000 * 109.57921 * 62.27744 * 17 14 13 33 33 H 1.00904 * 111.00083 * 179.79815 * 20 18 17 34 34 H 1.00894 * 110.99829 * 303.75471 * 20 18 17 35 35 H 1.09005 * 109.45916 * 305.86003 * 21 12 2 36 36 H 1.09002 * 109.46161 * 65.82197 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.3555 -2.1612 -4.4148 10 1 2.4911 -0.1346 -5.1106 11 1 3.6388 -1.7479 -3.7104 12 7 2.0196 -0.6925 1.1995 13 6 1.5438 -0.0301 2.4207 14 6 1.9493 -0.8575 3.6425 15 1 1.4951 -1.8463 3.5794 16 6 1.4722 -0.1566 4.9162 17 6 3.4737 -0.9962 3.6758 18 6 3.9479 -1.6448 2.3723 19 1 5.0360 -1.7079 2.3714 20 7 3.3782 -2.9942 2.2603 21 6 3.4845 -0.7946 1.1873 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 0.7043 1.1577 -3.4845 26 1 1.9870 0.9633 2.4913 27 1 0.4579 0.0586 2.3861 28 1 1.9256 0.8327 4.9781 29 1 0.3870 -0.0581 4.8920 30 1 1.7643 -0.7452 5.7859 31 1 3.7643 -1.6212 4.5202 32 1 3.9280 -0.0108 3.7786 33 1 3.6743 -3.4419 1.4058 34 1 3.6170 -3.5553 3.0641 35 1 3.8082 -1.2611 0.2568 36 1 3.9187 0.2023 1.2636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252119793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = -4.439081 kcal Electronic energy + Delta-G solvation = -15183.236189 eV Core-core repulsion = 12894.730771 eV Total energy + Delta-G solvation = -2288.505419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.73309 -34.86780 -33.31912 -32.12593 -29.04842 -27.69734 -26.47428 -24.73901 -23.28499 -20.81325 -19.54939 -18.58298 -16.13721 -15.50692 -15.28466 -14.47890 -14.23400 -14.02673 -13.52096 -13.09554 -12.69005 -12.29782 -11.93144 -11.75134 -11.45367 -11.35845 -11.10910 -10.91782 -10.57790 -10.28259 -10.22377 -10.06141 -9.95229 -9.76330 -9.39076 -8.73646 -8.34408 -8.03398 -6.90088 -5.94482 -3.98230 3.33919 3.40056 3.42542 4.45484 4.86079 5.15089 5.19066 5.31308 5.36694 5.45241 5.66450 5.90829 5.94752 6.03405 6.10463 6.21936 6.23431 6.35084 6.46257 6.51648 6.69206 6.79153 6.95589 7.01602 7.17561 7.27828 7.61429 7.66967 7.88540 7.90259 7.96130 8.36712 8.46904 8.76631 9.09449 9.66289 11.12284 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040435 B = 0.009499 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.306996 B = 2946.918177 C = 3423.078195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.211 3.789 3 H -0.008 1.008 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.276 1.276 12 N -0.512 5.512 13 C 0.061 3.939 14 C -0.081 4.081 15 H 0.087 0.913 16 C -0.146 4.146 17 C -0.105 4.105 18 C 0.093 3.907 19 H 0.023 0.977 20 N -0.822 5.822 21 C 0.072 3.928 22 H 0.007 0.993 23 H 0.083 0.917 24 H 0.034 0.966 25 H 0.259 0.741 26 H 0.011 0.989 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.340 0.660 34 H 0.324 0.676 35 H 0.083 0.917 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 -3.245 10.686 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.010 0.990 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.201 1.201 12 N -0.237 5.237 13 C -0.068 4.068 14 C -0.100 4.100 15 H 0.105 0.895 16 C -0.204 4.204 17 C -0.143 4.143 18 C -0.019 4.019 19 H 0.041 0.959 20 N -0.352 5.352 21 C -0.057 4.057 22 H 0.026 0.974 23 H 0.101 0.899 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.101 0.899 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.125 -3.210 10.513 11.428 hybrid contribution 1.651 0.158 -0.870 1.873 sum 4.776 -3.052 9.643 11.185 Atomic orbital electron populations 1.21819 0.97776 0.99612 0.99655 1.19227 0.92344 0.91667 0.86258 0.99010 1.21161 1.30534 1.12116 0.89779 0.91928 1.24947 0.95391 0.95106 0.98973 1.69902 1.37028 1.23275 1.23211 0.86542 0.79143 0.79258 0.82667 1.20715 1.21469 1.20086 1.61869 1.07709 1.52397 1.01680 1.22071 1.00156 0.93819 0.90709 1.21047 0.94739 1.00660 0.93520 0.89488 1.21829 1.00950 1.00046 0.97540 1.21633 0.96883 0.99509 0.96276 1.21435 0.93949 0.90390 0.96097 0.95930 1.58468 1.67455 1.02954 1.06305 1.21928 0.90106 0.96351 0.97323 0.97421 0.89866 0.94656 0.93120 0.97126 0.91201 0.93414 0.92874 0.93321 0.93069 0.92613 0.84708 0.86430 0.89889 0.96477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.74 37.16 0.32 -2.99 16 2 C 0.21 5.49 2.07 -68.86 -0.14 5.35 16 3 H -0.01 -0.22 8.14 -51.93 -0.42 -0.64 16 4 C -0.50 -13.78 7.86 -34.44 -0.27 -14.06 16 5 H 0.06 1.73 6.40 -52.49 -0.34 1.39 16 6 C 0.06 1.58 5.31 -17.82 -0.09 1.49 16 7 N -0.89 -25.95 11.31 55.43 0.63 -25.32 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.51 -11.35 4.37 -228.07 -1.00 -12.35 16 13 C 0.06 1.19 4.50 -3.84 -0.02 1.17 16 14 C -0.08 -1.29 2.72 -90.54 -0.25 -1.53 16 15 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 16 C -0.15 -1.91 9.20 37.16 0.34 -1.57 16 17 C -0.10 -1.54 4.92 -26.61 -0.13 -1.67 16 18 C 0.09 1.49 3.60 -67.63 -0.24 1.25 16 19 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 20 N -0.82 -12.48 8.46 -4.60 -0.04 -12.52 16 21 C 0.07 1.45 4.84 -3.83 -0.02 1.43 16 22 H 0.01 0.16 6.27 -51.93 -0.33 -0.17 16 23 H 0.08 2.29 6.06 -51.93 -0.31 1.98 16 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 1.39 6.00 -51.93 -0.31 1.08 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.34 5.10 9.04 -39.29 -0.36 4.74 16 34 H 0.32 4.05 9.00 -39.29 -0.35 3.70 16 35 H 0.08 1.81 6.03 -51.93 -0.31 1.50 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 275.01 15.07 4.14 4.14 Total: -1.00 -28.94 275.01 -7.86 -36.79 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.07 Total: 3.83 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.50 Total: -11.13 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.41 Total: -50.19 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.94 -7.86 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252119793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.354 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds