Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46845 * 111.00228 * 300.25602 * 12 2 1 14 14 C 1.53035 * 109.52481 * 174.16105 * 13 12 2 15 15 H 1.08998 * 109.50149 * 299.23702 * 14 13 12 16 16 C 1.53004 * 109.53454 * 179.14072 * 14 13 12 17 17 C 1.53112 * 109.27932 * 59.18098 * 14 13 12 18 18 C 1.53123 * 109.16087 * 302.34351 * 17 14 13 19 19 H 1.08990 * 109.53824 * 177.61212 * 18 17 14 20 20 N 1.46901 * 109.50394 * 297.71618 * 18 17 14 21 21 C 1.46847 * 111.00130 * 176.04435 * 12 2 1 22 22 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 23 23 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46017 * 294.18014 * 13 12 2 27 27 H 1.09002 * 109.46059 * 54.13963 * 13 12 2 28 28 H 1.08997 * 109.46974 * 300.17528 * 16 14 13 29 29 H 1.08995 * 109.47384 * 60.17737 * 16 14 13 30 30 H 1.08997 * 109.46723 * 180.17582 * 16 14 13 31 31 H 1.08996 * 109.52615 * 182.44380 * 17 14 13 32 32 H 1.09000 * 109.57921 * 62.27744 * 17 14 13 33 33 H 1.00904 * 111.00083 * 179.79815 * 20 18 17 34 34 H 1.00894 * 110.99829 * 303.75471 * 20 18 17 35 35 H 1.09005 * 109.45916 * 305.86003 * 21 12 2 36 36 H 1.09002 * 109.46161 * 65.82197 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.3555 -2.1612 -4.4148 10 1 2.4911 -0.1346 -5.1106 11 1 3.6388 -1.7479 -3.7104 12 7 2.0196 -0.6925 1.1995 13 6 1.5438 -0.0301 2.4207 14 6 1.9493 -0.8575 3.6425 15 1 1.4951 -1.8463 3.5794 16 6 1.4722 -0.1566 4.9162 17 6 3.4737 -0.9962 3.6758 18 6 3.9479 -1.6448 2.3723 19 1 5.0360 -1.7079 2.3714 20 7 3.3782 -2.9942 2.2603 21 6 3.4845 -0.7946 1.1873 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 0.7043 1.1577 -3.4845 26 1 1.9870 0.9633 2.4913 27 1 0.4579 0.0586 2.3861 28 1 1.9256 0.8327 4.9781 29 1 0.3870 -0.0581 4.8920 30 1 1.7643 -0.7452 5.7859 31 1 3.7643 -1.6212 4.5202 32 1 3.9280 -0.0108 3.7786 33 1 3.6743 -3.4419 1.4058 34 1 3.6170 -3.5553 3.0641 35 1 3.8082 -1.2611 0.2568 36 1 3.9187 0.2023 1.2636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252119793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = -25.123780 kcal Electronic energy + Delta-G solvation = -15184.133145 eV Core-core repulsion = 12894.730771 eV Total energy + Delta-G solvation = -2289.402374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24751 -36.63262 -34.64557 -34.03969 -30.84530 -29.18629 -27.99598 -26.59869 -24.95963 -22.18150 -21.47976 -19.97238 -18.26611 -17.24927 -16.54547 -16.19552 -15.76165 -15.52047 -15.01010 -14.68285 -14.41114 -13.90341 -13.44975 -13.20746 -13.08384 -12.85521 -12.76270 -12.57414 -12.34813 -12.20455 -12.02030 -11.91602 -11.43143 -11.36903 -10.93351 -10.73943 -10.47203 -9.23300 -8.73460 -8.09211 -6.20648 1.41681 1.43178 1.52738 2.43048 3.17999 3.37673 3.80441 3.94564 4.01408 4.18200 4.38284 4.58040 4.63980 4.74141 4.81001 4.83685 4.91709 4.99267 5.01666 5.02972 5.07332 5.11715 5.29822 5.35828 5.43852 5.53712 5.67930 5.76783 5.85039 6.29202 6.41354 6.57402 6.86714 6.89540 6.97113 7.48391 8.96991 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040435 B = 0.009499 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.306996 B = 2946.918177 C = 3423.078195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.214 3.786 3 H -0.048 1.048 4 C -0.511 4.511 5 H 0.060 0.940 6 C 0.007 3.993 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.515 5.515 13 C 0.058 3.942 14 C -0.073 4.073 15 H 0.077 0.923 16 C -0.140 4.140 17 C -0.102 4.102 18 C 0.100 3.900 19 H 0.043 0.957 20 N -0.832 5.832 21 C 0.071 3.929 22 H 0.026 0.974 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.002 0.998 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.340 0.660 34 H 0.344 0.656 35 H 0.060 0.940 36 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 -4.501 12.065 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 H -0.031 1.031 4 C -0.550 4.550 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.192 1.192 12 N -0.239 5.239 13 C -0.070 4.070 14 C -0.092 4.092 15 H 0.095 0.905 16 C -0.197 4.197 17 C -0.140 4.140 18 C -0.011 4.011 19 H 0.061 0.939 20 N -0.363 5.363 21 C -0.058 4.058 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.078 0.922 36 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 3.982 -4.482 11.925 13.347 hybrid contribution 1.378 0.577 -1.275 1.964 sum 5.361 -3.905 10.649 12.546 Atomic orbital electron populations 1.21625 0.97496 0.99040 0.99400 1.19056 0.92585 0.89699 0.87998 1.03105 1.21407 1.30624 1.12129 0.90798 0.92179 1.25768 0.95548 0.95805 1.02027 1.70038 1.37918 1.24511 1.23904 0.85496 0.78857 0.78134 0.78752 1.20180 1.21096 1.19184 1.61855 1.09034 1.51713 1.01275 1.22191 0.99474 0.94120 0.91222 1.20974 0.95804 0.99540 0.92867 0.90469 1.21774 1.01022 1.00272 0.96679 1.21639 0.95679 1.00199 0.96443 1.21320 0.94996 0.90156 0.94664 0.93910 1.58390 1.67752 1.02889 1.07288 1.21964 0.88808 0.96457 0.98615 0.95493 0.92278 0.95132 0.93061 0.98003 0.92162 0.93093 0.92809 0.90895 0.89948 0.92347 0.84722 0.84279 0.92186 0.97782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.11 8.74 71.98 0.63 -5.48 16 2 C 0.21 11.48 2.07 44.17 0.09 11.57 16 3 H -0.05 -2.93 8.14 -2.39 -0.02 -2.95 16 4 C -0.51 -28.95 7.86 25.60 0.20 -28.75 16 5 H 0.06 3.37 6.40 -2.92 -0.02 3.35 16 6 C 0.01 0.37 5.31 84.66 0.45 0.82 16 7 N -0.92 -54.80 11.31 21.45 0.24 -54.55 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.51 -23.04 4.37 -875.49 -3.83 -26.87 16 13 C 0.06 2.25 4.50 86.33 0.39 2.64 16 14 C -0.07 -2.16 2.72 -10.74 -0.03 -2.19 16 15 H 0.08 2.48 7.72 -2.39 -0.02 2.46 16 16 C -0.14 -3.24 9.20 71.98 0.66 -2.58 16 17 C -0.10 -2.67 4.92 30.67 0.15 -2.52 16 18 C 0.10 3.01 3.60 44.97 0.16 3.17 16 19 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 20 N -0.83 -23.40 8.46 -168.46 -1.43 -24.82 16 21 C 0.07 2.86 4.84 86.33 0.42 3.28 16 22 H 0.03 1.24 6.27 -2.39 -0.01 1.23 16 23 H 0.06 3.35 6.06 -2.38 -0.01 3.34 16 24 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.06 2.40 6.00 -2.39 -0.01 2.39 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.34 9.65 9.04 -89.69 -0.81 8.84 16 34 H 0.34 7.47 9.00 -89.70 -0.81 6.66 16 35 H 0.06 2.67 6.03 -2.38 -0.01 2.66 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -62.95 275.01 -0.42 -63.37 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.56 Total: 16.31 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 3.12 Total: -20.06 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -5.01 Total: -106.25 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -62.95 -0.42 -63.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252119793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.246 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds