Wall clock time and date at job start Mon Mar 30 2020 02:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.50696 * 109.47331 * 239.99896 * 2 1 3 5 5 H 1.08002 * 120.00206 * 245.46202 * 4 2 1 6 6 C 1.37879 * 120.00070 * 65.46897 * 4 2 1 7 7 N 1.31515 * 119.99895 * 9.59402 * 6 4 2 8 8 Si 1.86801 * 119.99897 * 189.60569 * 6 4 2 9 9 H 1.48500 * 109.47533 * 84.99062 * 8 6 4 10 10 H 1.48510 * 109.46861 * 204.99006 * 8 6 4 11 11 H 1.48498 * 109.47125 * 324.98722 * 8 6 4 12 12 N 1.46901 * 109.46952 * 119.99787 * 2 1 3 13 13 C 1.47441 * 111.00008 * 55.84651 * 12 2 1 14 14 C 1.54323 * 107.23260 * 236.74200 * 13 12 2 15 15 H 1.08999 * 110.70168 * 96.09732 * 14 13 12 16 16 C 1.53003 * 110.85484 * 219.26397 * 14 13 12 17 17 N 1.46904 * 109.47025 * 288.68640 * 16 14 13 18 18 C 1.55138 * 103.01756 * 337.71467 * 14 13 12 19 19 C 1.47844 * 111.00206 * 295.00135 * 12 2 1 20 20 H 1.09003 * 110.37369 * 27.53307 * 19 12 2 21 21 C 1.53004 * 110.37597 * 265.30522 * 19 12 2 22 22 H 1.09001 * 109.47263 * 183.16915 * 1 2 3 23 23 H 1.08996 * 109.47412 * 303.17257 * 1 2 3 24 24 H 1.09000 * 109.47055 * 63.17432 * 1 2 3 25 25 H 0.96997 * 119.99952 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.88711 * 356.14532 * 13 12 2 27 27 H 1.09004 * 109.88815 * 117.33545 * 13 12 2 28 28 H 1.09000 * 109.47125 * 48.68236 * 16 14 13 29 29 H 1.08993 * 109.47199 * 168.68401 * 16 14 13 30 30 H 1.00896 * 111.00240 * 180.02562 * 17 16 14 31 31 H 1.00897 * 110.99684 * 303.95672 * 17 16 14 32 32 H 1.09000 * 110.99253 * 277.56505 * 18 14 13 33 33 H 1.09005 * 110.99236 * 153.74547 * 18 14 13 34 34 H 1.09001 * 109.47144 * 59.99774 * 21 19 12 35 35 H 1.09000 * 109.47169 * 179.97438 * 21 19 12 36 36 H 1.09003 * 109.46950 * 300.00139 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1338 6 6 1.7948 -0.1773 -2.4796 7 7 1.3003 1.0360 -2.5935 8 14 2.1750 -1.1785 -4.0101 9 1 1.0223 -2.0606 -4.3237 10 1 2.4222 -0.2621 -5.1523 11 1 3.3829 -2.0086 -3.7711 12 7 2.0196 -0.6925 1.1995 13 6 1.4671 -2.0568 1.2845 14 6 0.7390 -2.1716 2.6403 15 1 -0.3278 -1.9821 2.5220 16 6 0.9759 -3.5452 3.2712 17 7 0.2376 -4.5654 2.5148 18 6 1.4035 -1.0560 3.4893 19 6 1.6462 0.0439 2.4259 20 1 0.7354 0.6194 2.2606 21 6 2.7864 0.9666 2.8612 22 1 -0.3634 -1.0261 0.0568 23 1 -0.3634 0.5623 0.8601 24 1 -0.3633 0.4638 -0.9171 25 1 1.1328 1.4109 -3.4723 26 1 0.7623 -2.2228 0.4699 27 1 2.2744 -2.7876 1.2340 28 1 2.0409 -3.7764 3.2491 29 1 0.6276 -3.5356 4.3039 30 1 0.3776 -5.4821 2.9123 31 1 -0.7444 -4.3389 2.4658 32 1 2.3451 -1.3997 3.9174 33 1 0.7277 -0.7035 4.2685 34 1 2.9975 1.6829 2.0672 35 1 2.4957 1.5019 3.7652 36 1 3.6783 0.3727 3.0611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252140768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:36 Heat of formation + Delta-G solvation = -24.816688 kcal Electronic energy + Delta-G solvation = -15080.355206 eV Core-core repulsion = 12790.966148 eV Total energy + Delta-G solvation = -2289.389058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48059 -36.44524 -35.03387 -32.94172 -31.64343 -29.31311 -27.26075 -26.46578 -25.15485 -22.51675 -21.31716 -20.06269 -18.10370 -17.56938 -16.60019 -16.46098 -15.53355 -15.35829 -14.95855 -14.61181 -14.55607 -13.97886 -13.56548 -13.16509 -13.07342 -12.94031 -12.74744 -12.50460 -12.36204 -12.28715 -11.99572 -11.62818 -11.61150 -11.42759 -11.27824 -10.91124 -10.44475 -9.48208 -8.77412 -8.13352 -6.18998 1.40760 1.41584 1.51732 2.43480 3.17157 3.47056 3.57374 3.83896 4.00158 4.16216 4.38268 4.54010 4.55987 4.70753 4.73546 4.78770 4.83793 4.85316 4.99355 5.01209 5.07764 5.15276 5.20782 5.38725 5.47165 5.48292 5.58260 5.69738 5.80011 6.21564 6.31752 6.57645 6.69004 6.81913 6.95118 7.48581 8.95909 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.010125 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.525983 B = 2764.784732 C = 3360.647631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.513 4.513 5 H 0.050 0.950 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.536 5.536 13 C 0.074 3.926 14 C -0.102 4.102 15 H 0.065 0.935 16 C 0.083 3.917 17 N -0.863 5.863 18 C -0.104 4.104 19 C 0.052 3.948 20 H 0.037 0.963 21 C -0.124 4.124 22 H 0.039 0.961 23 H 0.030 0.970 24 H 0.039 0.961 25 H 0.261 0.739 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.351 0.649 31 H 0.344 0.656 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -6.582 13.062 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.551 4.551 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.260 5.260 13 C -0.054 4.054 14 C -0.122 4.122 15 H 0.083 0.917 16 C -0.048 4.048 17 N -0.394 5.394 18 C -0.142 4.142 19 C -0.057 4.057 20 H 0.055 0.945 21 C -0.182 4.182 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.309 -6.260 12.266 13.834 hybrid contribution -1.271 -0.165 -0.471 1.366 sum -2.580 -6.425 11.795 13.677 Atomic orbital electron populations 1.22165 1.00568 0.98983 0.99125 1.19099 0.89588 0.93092 0.87702 0.97765 1.21321 1.34747 1.07768 0.91270 0.93198 1.25678 0.95552 0.95590 1.01817 1.70085 1.46594 1.15255 1.24266 0.85637 0.78676 0.78682 0.79069 1.19999 1.20871 1.19568 1.63695 1.57866 1.02406 1.02010 1.22461 0.96462 0.90270 0.96231 1.22397 0.99063 0.95580 0.95188 0.91699 1.21649 0.98834 0.89863 0.94405 1.58593 1.15649 1.05659 1.59486 1.22708 1.01325 0.93736 0.96461 1.22685 0.96755 0.95717 0.90499 0.94482 1.21613 0.98095 0.98375 1.00109 0.94168 0.95152 0.94173 0.93015 0.94437 0.93164 0.91367 0.93641 0.83577 0.84352 0.89931 0.89286 0.95243 0.90470 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.39 8.51 71.98 0.61 -6.78 16 2 C 0.21 11.28 2.16 44.17 0.10 11.38 16 3 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 4 C -0.51 -29.65 7.84 25.60 0.20 -29.45 16 5 H 0.05 2.93 7.51 -2.91 -0.02 2.91 16 6 C 0.01 0.70 5.17 84.65 0.44 1.13 16 7 N -0.92 -55.29 12.16 21.45 0.26 -55.03 16 8 Si 0.95 45.55 29.55 68.60 2.03 47.58 16 9 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 12 N -0.54 -23.81 4.81 -839.99 -4.04 -27.85 16 13 C 0.07 2.95 5.05 86.65 0.44 3.39 16 14 C -0.10 -3.02 3.09 -9.61 -0.03 -3.05 16 15 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 16 C 0.08 1.95 6.13 86.30 0.53 2.48 16 17 N -0.86 -19.51 9.54 -186.71 -1.78 -21.29 16 18 C -0.10 -2.82 5.94 31.98 0.19 -2.63 16 19 C 0.05 1.86 2.81 45.39 0.13 1.98 16 20 H 0.04 1.43 5.90 -2.39 -0.01 1.41 16 21 C -0.12 -4.03 9.60 71.98 0.69 -3.34 16 22 H 0.04 1.90 6.00 -2.39 -0.01 1.89 16 23 H 0.03 1.34 6.34 -2.39 -0.02 1.33 16 24 H 0.04 2.19 6.84 -2.39 -0.02 2.17 16 25 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.04 1.71 5.34 -2.39 -0.01 1.70 16 27 H 0.05 2.08 7.70 -2.39 -0.02 2.07 16 28 H 0.07 1.67 7.94 -2.39 -0.02 1.66 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.35 6.12 9.08 -89.70 -0.81 5.31 16 31 H 0.34 7.10 8.99 -89.70 -0.81 6.29 16 32 H 0.08 2.08 7.96 -2.39 -0.02 2.06 16 33 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 Total: -1.00 -64.52 278.52 -0.80 -65.33 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.56 Total: 16.15 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 3.29 Total: -24.88 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -5.56 Total: -104.17 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -64.52 -0.80 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252140768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.509 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds