Wall clock time and date at job start Mon Mar 30 2020 02:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.26989 * 2 1 4 4 C 1.53990 * 110.30453 * 237.91142 * 2 1 3 5 5 N 1.47904 * 107.05628 * 242.30802 * 4 2 1 6 6 C 1.46899 * 111.00063 * 214.15954 * 5 4 2 7 7 C 1.50696 * 109.47368 * 175.83146 * 6 5 4 8 8 H 1.07999 * 119.99856 * 355.39260 * 7 6 5 9 9 C 1.37876 * 120.00312 * 175.12081 * 7 6 5 10 10 N 1.31521 * 119.99779 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00396 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47203 * 89.99507 * 11 9 7 13 13 H 1.48501 * 109.46936 * 209.99699 * 11 9 7 14 14 H 1.48494 * 109.46837 * 329.99795 * 11 9 7 15 15 C 1.48537 * 105.81904 * 334.67034 * 5 4 2 16 16 C 1.54597 * 110.30955 * 122.19448 * 2 1 3 17 17 H 1.08992 * 110.72274 * 22.51271 * 16 2 1 18 18 N 1.46904 * 110.72267 * 259.40646 * 16 2 1 19 19 C 1.46904 * 110.99774 * 64.80225 * 18 16 2 20 20 C 1.46891 * 110.99874 * 188.75382 * 18 16 2 21 21 H 1.09001 * 109.47027 * 180.64181 * 1 2 3 22 22 H 1.09003 * 109.46963 * 300.63289 * 1 2 3 23 23 H 1.08993 * 109.47476 * 60.63516 * 1 2 3 24 24 H 1.09001 * 109.91524 * 122.95445 * 4 2 1 25 25 H 1.08996 * 109.91974 * 1.65822 * 4 2 1 26 26 H 1.09003 * 109.47179 * 55.83065 * 6 5 4 27 27 H 1.09002 * 109.46954 * 295.83401 * 6 5 4 28 28 H 0.97000 * 120.00056 * 180.02562 * 10 9 7 29 29 H 1.08994 * 110.66641 * 157.64637 * 15 5 4 30 30 H 1.09002 * 110.66740 * 280.77421 * 15 5 4 31 31 H 1.09002 * 109.47055 * 59.99782 * 19 18 16 32 32 H 1.08993 * 109.46921 * 179.97438 * 19 18 16 33 33 H 1.08996 * 109.47060 * 300.00254 * 19 18 16 34 34 H 1.09001 * 109.47363 * 55.22131 * 20 18 16 35 35 H 1.09006 * 109.47398 * 175.21989 * 20 18 16 36 36 H 1.09004 * 109.47300 * 295.22020 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0644 -0.7672 -1.2236 5 7 2.8312 -1.9230 -0.7100 6 6 3.9750 -2.2248 -1.5809 7 6 4.7887 -3.3384 -0.9737 8 1 4.5298 -3.7273 0.0000 9 6 5.8603 -3.8646 -1.6635 10 7 6.1720 -3.3949 -2.8518 11 14 6.8685 -5.2455 -0.9111 12 1 6.2891 -6.5541 -1.3075 13 1 8.2691 -5.1568 -1.3965 14 1 6.8486 -5.1232 0.5686 15 6 3.2855 -1.5354 0.6501 16 6 2.0666 -0.7725 1.2269 17 1 1.3173 -1.4696 1.6017 18 7 2.4839 0.1574 2.2849 19 6 1.3355 0.9099 2.8074 20 6 3.1832 -0.5526 3.3641 21 1 -0.3633 -1.0276 0.0115 22 1 -0.3633 0.5236 0.8843 23 1 -0.3634 0.5039 -0.8955 24 1 2.7161 -0.1209 -1.8115 25 1 1.2326 -1.1159 -1.8355 26 1 4.5969 -1.3357 -1.6852 27 1 3.6134 -2.5324 -2.5621 28 1 6.9256 -3.7653 -3.3373 29 1 3.5047 -2.4193 1.2489 30 1 4.1563 -0.8823 0.5932 31 1 0.6040 0.2156 3.2209 32 1 1.6725 1.5904 3.5893 33 1 0.8780 1.4816 2.0001 34 1 4.0201 -1.1132 2.9476 35 1 3.5553 0.1685 4.0920 36 1 2.4932 -1.2399 3.8535 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252493235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:14 Heat of formation + Delta-G solvation = 6.581199 kcal Electronic energy + Delta-G solvation = -14845.729900 eV Core-core repulsion = 12557.702357 eV Total energy + Delta-G solvation = -2288.027543 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.11681 -35.86508 -33.23012 -31.79212 -28.84518 -27.17022 -26.95785 -24.88814 -23.40313 -21.42529 -19.92412 -19.37983 -16.52894 -15.86395 -15.08043 -14.46444 -14.44833 -14.13940 -13.40245 -13.15681 -12.95266 -12.81258 -12.27131 -12.15116 -11.96049 -11.67794 -11.29038 -11.17340 -11.00697 -10.65780 -10.50434 -10.45622 -10.32366 -10.01525 -9.72577 -9.08194 -8.43250 -8.17251 -7.28337 -6.01438 -4.02733 3.33111 3.38745 3.42126 4.08655 4.44521 4.95750 5.11204 5.18898 5.30102 5.33361 5.40303 5.45427 5.60512 5.67157 5.76420 5.80066 5.85445 5.95583 6.05306 6.12128 6.22893 6.34471 6.45969 6.58924 6.64020 6.68026 7.17505 7.20336 7.34583 7.41073 7.78374 8.03375 8.23522 8.54256 9.04246 9.61360 11.10006 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038444 B = 0.008146 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.161748 B = 3436.248954 C = 3983.001718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.078 0.922 4 C 0.040 3.960 5 N -0.516 5.516 6 C 0.185 3.815 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.063 3.937 16 C 0.077 3.923 17 H 0.050 0.950 18 N -0.539 5.539 19 C 0.024 3.976 20 C 0.023 3.977 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.068 0.932 26 H -0.010 1.010 27 H 0.035 0.965 28 H 0.261 0.739 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 7.238 9.002 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.089 4.089 5 N -0.241 5.241 6 C 0.059 3.941 7 C -0.548 4.548 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.065 4.065 16 C -0.032 4.032 17 H 0.068 0.932 18 N -0.264 5.264 19 C -0.124 4.124 20 C -0.125 4.125 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.008 0.992 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.746 7.069 8.644 14.184 hybrid contribution 0.603 -0.616 0.568 1.032 sum -8.144 6.454 9.212 13.886 Atomic orbital electron populations 1.21923 0.95223 1.01835 1.00993 1.22001 0.95217 0.99577 0.94610 0.90392 1.22876 0.98061 0.92236 0.95725 1.64848 1.24371 1.32484 1.02407 1.19896 0.86023 0.95438 0.92709 1.21169 1.11715 1.18096 1.03849 0.92030 1.24989 0.97511 0.97147 0.94894 1.69963 1.28676 1.42517 1.12574 0.86505 0.79239 0.82329 0.79386 1.20618 1.21276 1.19886 1.22954 0.94470 0.97470 0.91628 1.22778 0.97294 0.92281 0.90807 0.93162 1.62043 1.25608 1.27439 1.11272 1.22429 0.92297 0.97798 0.99910 1.22399 0.98845 0.97638 0.93660 0.92410 0.93148 0.92777 0.94429 0.91364 0.99213 0.94702 0.92917 0.90827 0.93318 0.96032 0.91926 0.91183 0.90596 0.91832 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.69 37.16 0.32 -1.49 16 2 C -0.09 -1.48 2.49 -89.26 -0.22 -1.70 16 3 H 0.08 1.22 7.91 -51.93 -0.41 0.80 16 4 C 0.04 0.75 6.36 -2.75 -0.02 0.74 16 5 N -0.52 -11.66 5.34 -231.90 -1.24 -12.90 16 6 C 0.18 4.98 4.60 -4.98 -0.02 4.96 16 7 C -0.51 -14.60 8.68 -34.44 -0.30 -14.90 16 8 H 0.06 1.73 6.73 -52.49 -0.35 1.38 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 11 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.06 1.29 3.92 -1.90 -0.01 1.28 16 16 C 0.08 1.27 2.31 -65.85 -0.15 1.12 16 17 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 18 N -0.54 -7.93 4.86 -240.93 -1.17 -9.10 16 19 C 0.02 0.28 8.82 60.07 0.53 0.81 16 20 C 0.02 0.31 9.40 60.06 0.56 0.87 16 21 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 22 H 0.05 0.57 6.24 -51.93 -0.32 0.24 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.74 7.67 -51.93 -0.40 0.34 16 25 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 26 H -0.01 -0.28 7.97 -51.93 -0.41 -0.70 16 27 H 0.03 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.07 1.55 7.04 -51.93 -0.37 1.18 16 30 H 0.05 1.07 8.01 -51.93 -0.42 0.66 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.79 5.89 -51.93 -0.31 0.49 16 34 H 0.08 1.11 6.76 -51.93 -0.35 0.76 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 280.14 15.07 4.22 4.22 Total: -1.00 -30.10 280.14 -8.11 -38.21 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -6.24 Total: -4.14 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 0.60 Total: -6.80 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.67 Total: -48.36 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.10 -8.11 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252493235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.795 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds