Wall clock time and date at job start Mon Mar 30 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.28504 * 2 1 4 4 C 1.54373 * 110.32012 * 122.23618 * 2 1 3 5 5 N 1.48557 * 104.59397 * 142.75128 * 4 2 1 6 6 C 1.46903 * 111.00234 * 200.95674 * 5 4 2 7 7 C 1.50701 * 109.47307 * 285.41973 * 6 5 4 8 8 H 1.08004 * 119.99610 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00403 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99624 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00050 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46978 * 90.00643 * 11 9 7 13 13 H 1.48502 * 109.46844 * 209.99747 * 11 9 7 14 14 H 1.48500 * 109.47262 * 330.00142 * 11 9 7 15 15 C 1.48559 * 104.22347 * 320.51218 * 5 4 2 16 16 C 1.54259 * 110.32379 * 237.87065 * 2 1 3 17 17 H 1.09003 * 110.40860 * 122.16326 * 16 2 1 18 18 N 1.46898 * 110.32430 * 0.02562 * 16 2 1 19 19 C 1.46900 * 111.00528 * 83.46254 * 18 16 2 20 20 C 1.46909 * 110.99866 * 207.41794 * 18 16 2 21 21 H 1.08997 * 109.47166 * 172.64009 * 1 2 3 22 22 H 1.08996 * 109.47442 * 292.64435 * 1 2 3 23 23 H 1.09007 * 109.47140 * 52.64809 * 1 2 3 24 24 H 1.09003 * 110.41541 * 23.96797 * 4 2 1 25 25 H 1.09000 * 110.41411 * 261.52739 * 4 2 1 26 26 H 1.09004 * 109.46966 * 45.41375 * 6 5 4 27 27 H 1.09003 * 109.47441 * 165.41622 * 6 5 4 28 28 H 0.97000 * 119.99586 * 179.97438 * 10 9 7 29 29 H 1.08998 * 110.41522 * 158.26006 * 15 5 4 30 30 H 1.08999 * 110.41173 * 280.70869 * 15 5 4 31 31 H 1.08999 * 109.46739 * 60.00153 * 19 18 16 32 32 H 1.08999 * 109.46956 * 180.02562 * 19 18 16 33 33 H 1.08997 * 109.46931 * 299.99748 * 19 18 16 34 34 H 1.09001 * 109.47182 * 71.05460 * 20 18 16 35 35 H 1.08995 * 109.47332 * 191.05868 * 20 18 16 36 36 H 1.08995 * 109.46847 * 311.06143 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0661 -0.7722 1.2245 5 7 3.2693 -1.4835 0.7211 6 6 3.6068 -2.6232 1.5844 7 6 4.2263 -2.1192 2.8624 8 1 4.3567 -1.0584 3.0176 9 6 4.6267 -3.0123 3.8335 10 7 4.4683 -4.3042 3.6443 11 14 5.3952 -2.3876 5.4173 12 1 4.3301 -2.1517 6.4249 13 1 6.3517 -3.3984 5.9356 14 1 6.1147 -1.1162 5.1505 15 6 2.8807 -1.9416 -0.6376 16 6 2.0658 -0.7693 -1.2250 17 1 2.7078 -0.1261 -1.8268 18 7 0.9513 -1.2777 -2.0357 19 6 0.4506 -0.2430 -2.9504 20 6 1.3447 -2.4862 -2.7726 21 1 -0.3633 -1.0192 -0.1316 22 1 -0.3634 0.3956 0.9484 23 1 -0.3634 0.6235 -0.8170 24 1 1.3228 -1.4863 1.5790 25 1 2.3393 -0.0798 2.0208 26 1 2.7013 -3.1841 1.8161 27 1 4.3145 -3.2725 1.0689 28 1 4.7503 -4.9325 4.3273 29 1 3.7670 -2.1297 -1.2434 30 1 2.2648 -2.8387 -0.5746 31 1 1.2532 0.0712 -3.6176 32 1 -0.3742 -0.6459 -3.5381 33 1 0.1011 0.6134 -2.3738 34 1 1.4555 -3.3169 -2.0755 35 1 0.5779 -2.7290 -3.5082 36 1 2.2926 -2.3095 -3.2807 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252493236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:16 Heat of formation + Delta-G solvation = 18.272740 kcal Electronic energy + Delta-G solvation = -14866.049016 eV Core-core repulsion = 12578.528456 eV Total energy + Delta-G solvation = -2287.520560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.27961 -35.81438 -33.03981 -31.80041 -29.08731 -27.14806 -26.51674 -25.25452 -23.32166 -21.63264 -20.03351 -18.82323 -16.37187 -15.98429 -15.43744 -14.65263 -14.45684 -14.31727 -13.40465 -13.28682 -12.73618 -12.44988 -12.19159 -12.01821 -11.87506 -11.56109 -11.45829 -11.12271 -10.89491 -10.64587 -10.50686 -10.45235 -10.08721 -10.01430 -9.74650 -9.15571 -8.39732 -8.13431 -7.34214 -5.99346 -4.00336 3.34441 3.40167 3.45152 4.04751 4.46732 4.98753 5.12548 5.14910 5.27017 5.36588 5.41533 5.49988 5.57359 5.66002 5.71411 5.82509 5.95109 6.00928 6.05807 6.22212 6.30925 6.34143 6.49097 6.59155 6.75326 6.84026 7.09131 7.17633 7.32911 7.34972 7.81707 8.03570 8.21276 8.54762 9.07548 9.63734 11.11811 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054557 B = 0.007176 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.100945 B = 3900.964810 C = 4196.685785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 H 0.068 0.932 4 C 0.054 3.946 5 N -0.509 5.509 6 C 0.184 3.816 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.032 3.968 16 C 0.082 3.918 17 H 0.049 0.951 18 N -0.536 5.536 19 C 0.020 3.980 20 C 0.021 3.979 21 H 0.068 0.932 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.074 0.926 26 H -0.005 1.005 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 6.428 -10.963 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.075 4.075 5 N -0.233 5.233 6 C 0.058 3.942 7 C -0.542 4.542 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.097 4.097 16 C -0.027 4.027 17 H 0.067 0.933 18 N -0.260 5.260 19 C -0.128 4.128 20 C -0.127 4.127 21 H 0.087 0.913 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.394 6.451 -10.562 14.417 hybrid contribution 0.467 -0.199 0.343 0.613 sum -6.928 6.251 -10.219 13.838 Atomic orbital electron populations 1.21735 0.94550 1.02668 0.99710 1.21957 0.95982 0.98523 0.94464 0.91373 1.22964 0.91620 0.97150 0.95749 1.65463 1.30828 1.25998 1.01019 1.19868 0.95433 0.87274 0.91638 1.21137 1.39282 0.93531 1.00296 0.91930 1.24999 0.96181 0.94810 0.98731 1.69966 1.48208 1.01127 1.34717 0.86489 0.79070 0.78568 0.83253 1.20731 1.21281 1.19775 1.23242 0.97296 0.95706 0.93441 1.22493 0.89874 0.96152 0.94165 0.93345 1.62139 1.34540 1.05777 1.23582 1.22573 0.99134 0.95758 0.95345 1.22437 0.98852 0.93735 0.97714 0.91302 0.93962 0.93218 0.94261 0.90774 0.98735 0.95405 0.92972 0.91449 0.93442 0.96103 0.91823 0.90776 0.90802 0.92065 0.95564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 7.96 37.16 0.30 -1.51 16 2 C -0.09 -1.44 3.61 -89.24 -0.32 -1.77 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.05 1.08 5.66 -2.19 -0.01 1.07 16 5 N -0.51 -11.50 5.33 -231.41 -1.23 -12.74 16 6 C 0.18 4.95 4.59 -4.97 -0.02 4.93 16 7 C -0.50 -14.58 8.97 -34.44 -0.31 -14.89 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 11 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.03 0.60 4.96 -2.18 -0.01 0.59 16 16 C 0.08 1.29 2.92 -66.33 -0.19 1.10 16 17 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16 18 N -0.54 -7.35 3.30 -241.50 -0.80 -8.15 16 19 C 0.02 0.22 8.98 60.06 0.54 0.76 16 20 C 0.02 0.26 8.69 60.07 0.52 0.78 16 21 H 0.07 1.05 7.39 -51.93 -0.38 0.67 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.60 5.51 -51.92 -0.29 0.32 16 24 H 0.04 0.83 7.47 -51.93 -0.39 0.45 16 25 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 26 H -0.01 -0.15 7.77 -51.93 -0.40 -0.55 16 27 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.92 6.12 -51.93 -0.32 0.61 16 31 H 0.02 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.06 0.61 8.01 -51.93 -0.42 0.20 16 33 H 0.07 0.79 5.54 -51.93 -0.29 0.50 16 34 H 0.07 1.01 6.40 -51.93 -0.33 0.67 16 35 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 36 H 0.03 0.32 8.04 -51.93 -0.42 -0.10 16 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -30.22 277.49 -7.87 -38.09 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -6.13 Total: -4.40 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 0.39 Total: -7.47 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.29 Total: -47.41 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.22 -7.87 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252493236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.366 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds