Wall clock time and date at job start Mon Mar 30 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.28504 * 2 1 4 4 C 1.54373 * 110.32012 * 122.23618 * 2 1 3 5 5 N 1.48557 * 104.59397 * 142.75128 * 4 2 1 6 6 C 1.46903 * 111.00234 * 200.95674 * 5 4 2 7 7 C 1.50701 * 109.47307 * 285.41973 * 6 5 4 8 8 H 1.08004 * 119.99610 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00403 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99624 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00050 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46978 * 90.00643 * 11 9 7 13 13 H 1.48502 * 109.46844 * 209.99747 * 11 9 7 14 14 H 1.48500 * 109.47262 * 330.00142 * 11 9 7 15 15 C 1.48559 * 104.22347 * 320.51218 * 5 4 2 16 16 C 1.54259 * 110.32379 * 237.87065 * 2 1 3 17 17 H 1.09003 * 110.40860 * 122.16326 * 16 2 1 18 18 N 1.46898 * 110.32430 * 0.02562 * 16 2 1 19 19 C 1.46900 * 111.00528 * 83.46254 * 18 16 2 20 20 C 1.46909 * 110.99866 * 207.41794 * 18 16 2 21 21 H 1.08997 * 109.47166 * 172.64009 * 1 2 3 22 22 H 1.08996 * 109.47442 * 292.64435 * 1 2 3 23 23 H 1.09007 * 109.47140 * 52.64809 * 1 2 3 24 24 H 1.09003 * 110.41541 * 23.96797 * 4 2 1 25 25 H 1.09000 * 110.41411 * 261.52739 * 4 2 1 26 26 H 1.09004 * 109.46966 * 45.41375 * 6 5 4 27 27 H 1.09003 * 109.47441 * 165.41622 * 6 5 4 28 28 H 0.97000 * 119.99586 * 179.97438 * 10 9 7 29 29 H 1.08998 * 110.41522 * 158.26006 * 15 5 4 30 30 H 1.08999 * 110.41173 * 280.70869 * 15 5 4 31 31 H 1.08999 * 109.46739 * 60.00153 * 19 18 16 32 32 H 1.08999 * 109.46956 * 180.02562 * 19 18 16 33 33 H 1.08997 * 109.46931 * 299.99748 * 19 18 16 34 34 H 1.09001 * 109.47182 * 71.05460 * 20 18 16 35 35 H 1.08995 * 109.47332 * 191.05868 * 20 18 16 36 36 H 1.08995 * 109.46847 * 311.06143 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0661 -0.7722 1.2245 5 7 3.2693 -1.4835 0.7211 6 6 3.6068 -2.6232 1.5844 7 6 4.2263 -2.1192 2.8624 8 1 4.3567 -1.0584 3.0176 9 6 4.6267 -3.0123 3.8335 10 7 4.4683 -4.3042 3.6443 11 14 5.3952 -2.3876 5.4173 12 1 4.3301 -2.1517 6.4249 13 1 6.3517 -3.3984 5.9356 14 1 6.1147 -1.1162 5.1505 15 6 2.8807 -1.9416 -0.6376 16 6 2.0658 -0.7693 -1.2250 17 1 2.7078 -0.1261 -1.8268 18 7 0.9513 -1.2777 -2.0357 19 6 0.4506 -0.2430 -2.9504 20 6 1.3447 -2.4862 -2.7726 21 1 -0.3633 -1.0192 -0.1316 22 1 -0.3634 0.3956 0.9484 23 1 -0.3634 0.6235 -0.8170 24 1 1.3228 -1.4863 1.5790 25 1 2.3393 -0.0798 2.0208 26 1 2.7013 -3.1841 1.8161 27 1 4.3145 -3.2725 1.0689 28 1 4.7503 -4.9325 4.3273 29 1 3.7670 -2.1297 -1.2434 30 1 2.2648 -2.8387 -0.5746 31 1 1.2532 0.0712 -3.6176 32 1 -0.3742 -0.6459 -3.5381 33 1 0.1011 0.6134 -2.3738 34 1 1.4555 -3.3169 -2.0755 35 1 0.5779 -2.7290 -3.5082 36 1 2.2926 -2.3095 -3.2807 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252493236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:16 Heat of formation + Delta-G solvation = -2.758259 kcal Electronic energy + Delta-G solvation = -14866.960988 eV Core-core repulsion = 12578.528456 eV Total energy + Delta-G solvation = -2288.432533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67353 -37.25200 -35.00004 -33.43298 -30.63956 -28.33592 -28.20393 -26.76694 -24.83115 -23.20210 -21.74277 -20.14554 -18.48621 -17.40357 -16.99541 -16.27848 -15.75734 -15.57338 -15.09389 -14.85312 -14.46029 -13.81033 -13.58568 -13.30418 -13.18563 -12.96723 -12.95145 -12.82871 -12.50412 -12.40857 -12.09877 -11.84328 -11.77504 -11.42960 -11.33917 -11.24663 -10.62994 -9.27300 -9.14050 -8.22953 -6.33859 1.39814 1.41892 1.53832 2.39175 2.91971 3.09301 3.55163 3.64283 3.76435 4.14719 4.26512 4.36143 4.50929 4.52973 4.64312 4.69442 4.72616 4.73733 4.84962 4.96825 4.98064 5.00823 5.06033 5.13443 5.18159 5.27755 5.41016 5.61342 5.64618 5.94598 6.10748 6.14440 6.28228 6.47939 6.81417 7.36155 8.88665 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054557 B = 0.007176 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.100945 B = 3900.964810 C = 4196.685785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 H 0.083 0.917 4 C 0.053 3.947 5 N -0.521 5.521 6 C 0.201 3.799 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.000 4.000 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.264 1.264 15 C 0.032 3.968 16 C 0.093 3.907 17 H 0.058 0.942 18 N -0.546 5.546 19 C 0.020 3.980 20 C 0.021 3.979 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.020 0.980 25 H 0.064 0.936 26 H -0.036 1.036 27 H 0.000 1.000 28 H 0.265 0.735 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 8.156 -11.538 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.076 4.076 5 N -0.245 5.245 6 C 0.074 3.926 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.798 3.202 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.097 4.097 16 C -0.016 4.016 17 H 0.076 0.924 18 N -0.270 5.270 19 C -0.127 4.127 20 C -0.127 4.127 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.038 0.962 25 H 0.083 0.917 26 H -0.019 1.019 27 H 0.018 0.982 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.965 8.193 -11.162 15.974 hybrid contribution 0.617 -0.774 0.460 1.091 sum -7.348 7.419 -10.702 14.953 Atomic orbital electron populations 1.21663 0.92624 1.02406 1.01073 1.21937 0.97484 0.98451 0.92231 0.89834 1.22987 0.90283 0.96655 0.97635 1.65349 1.32734 1.24307 1.02117 1.19493 0.93219 0.88009 0.91859 1.21428 1.39925 0.93584 1.01414 0.92096 1.25974 0.96382 0.94889 1.02544 1.70095 1.48882 1.02493 1.36141 0.85321 0.78302 0.78241 0.78385 1.19639 1.20500 1.18869 1.23281 0.97854 0.96903 0.91624 1.22317 0.90321 0.94469 0.94466 0.92393 1.62116 1.33352 1.06831 1.24718 1.22647 0.99780 0.95185 0.95118 1.22434 0.99906 0.92728 0.97590 0.92724 0.93523 0.90563 0.96164 0.91730 1.01853 0.98190 0.92584 0.91322 0.94523 0.95453 0.90019 0.90116 0.92775 0.89662 0.95318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 7.96 71.98 0.57 -2.53 16 2 C -0.08 -2.50 3.61 -9.90 -0.04 -2.53 16 3 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.05 2.16 5.66 86.45 0.49 2.65 16 5 N -0.52 -24.22 5.33 -886.05 -4.72 -28.94 16 6 C 0.20 11.37 4.59 85.56 0.39 11.77 16 7 C -0.53 -31.18 8.97 25.60 0.23 -30.95 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 9 C 0.00 0.00 5.46 84.65 0.46 0.46 16 10 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 11 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.03 1.22 4.96 86.45 0.43 1.65 16 16 C 0.09 2.81 2.92 45.81 0.13 2.94 16 17 H 0.06 1.66 7.91 -2.39 -0.02 1.64 16 18 N -0.55 -13.79 3.30 -917.98 -3.03 -16.82 16 19 C 0.02 0.37 8.98 127.69 1.15 1.52 16 20 C 0.02 0.50 8.69 127.69 1.11 1.61 16 21 H 0.05 1.58 7.39 -2.39 -0.02 1.56 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.08 1.58 5.51 -2.38 -0.01 1.56 16 24 H 0.02 0.89 7.47 -2.39 -0.02 0.87 16 25 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 26 H -0.04 -2.22 7.77 -2.38 -0.02 -2.24 16 27 H 0.00 0.00 8.08 -2.39 -0.02 -0.02 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.04 1.48 6.12 -2.39 -0.01 1.47 16 31 H 0.03 0.48 8.08 -2.39 -0.02 0.46 16 32 H 0.08 1.25 8.01 -2.39 -0.02 1.23 16 33 H 0.08 1.39 5.54 -2.39 -0.01 1.38 16 34 H 0.05 1.48 6.40 -2.39 -0.02 1.46 16 35 H 0.08 1.59 7.92 -2.39 -0.02 1.57 16 36 H 0.03 0.66 8.04 -2.39 -0.02 0.64 16 Total: -1.00 -66.06 277.49 0.52 -65.55 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.02 Total: 3.87 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.93 Total: -13.41 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -7.47 Total: -103.40 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -66.06 0.52 -65.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252493236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.787 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds