Wall clock time and date at job start Mon Mar 30 2020 03:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00173 * 2 1 4 4 C 1.53000 * 109.47436 * 186.02521 * 3 2 1 5 5 H 1.09006 * 110.41553 * 66.56318 * 4 3 2 6 6 C 1.54903 * 110.37947 * 188.87632 * 4 3 2 7 7 C 1.55138 * 101.65507 * 155.90008 * 6 4 3 8 8 C 1.54318 * 103.01947 * 324.34794 * 7 6 4 9 9 N 1.47443 * 107.23059 * 22.28354 * 8 7 6 10 10 C 1.46894 * 110.99832 * 123.26130 * 9 8 7 11 11 H 1.09004 * 109.47242 * 184.65068 * 10 9 8 12 12 C 1.53001 * 109.47652 * 64.64862 * 10 9 8 13 13 C 1.50699 * 109.47079 * 304.64700 * 10 9 8 14 14 H 1.08006 * 119.99904 * 0.02562 * 13 10 9 15 15 C 1.37882 * 120.00257 * 179.72689 * 13 10 9 16 16 N 1.31513 * 119.99801 * 0.27105 * 15 13 10 17 17 Si 1.86795 * 119.99925 * 180.27808 * 15 13 10 18 18 H 1.48499 * 109.47386 * 89.99887 * 17 15 13 19 19 H 1.48503 * 109.46692 * 209.99647 * 17 15 13 20 20 H 1.48494 * 109.47274 * 329.99762 * 17 15 13 21 21 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46887 * 299.99785 * 1 2 3 23 23 H 1.09002 * 109.47042 * 59.99563 * 1 2 3 24 24 H 1.00903 * 111.00086 * 123.95858 * 2 1 3 25 25 H 1.09006 * 109.46917 * 66.02733 * 3 2 1 26 26 H 1.09002 * 109.47459 * 306.03054 * 3 2 1 27 27 H 1.09009 * 110.98723 * 37.80721 * 6 4 3 28 28 H 1.09005 * 111.02517 * 274.01107 * 6 4 3 29 29 H 1.09007 * 110.70699 * 205.96685 * 7 6 4 30 30 H 1.09000 * 110.85533 * 82.80507 * 7 6 4 31 31 H 1.09000 * 109.88701 * 262.87809 * 8 7 6 32 32 H 1.08993 * 109.88736 * 141.69129 * 8 7 6 33 33 H 1.09002 * 109.47214 * 53.38839 * 12 10 9 34 34 H 1.08995 * 109.47587 * 173.39447 * 12 10 9 35 35 H 1.09002 * 109.47234 * 293.39648 * 12 10 9 36 36 H 0.97000 * 120.00039 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5175 1.3334 -0.1514 5 1 3.7924 0.9533 -1.1354 6 6 4.1168 2.7448 0.0682 7 6 5.5679 2.4056 0.4994 8 6 5.3918 1.1154 1.3276 9 7 4.1196 0.4983 0.9096 10 6 4.3311 -0.8775 0.4403 11 1 3.3919 -1.2806 0.0612 12 6 4.8254 -1.7423 1.6016 13 6 5.3596 -0.8801 -0.6612 14 1 5.8113 0.0476 -0.9803 15 6 5.7285 -2.0674 -1.2573 16 7 5.1788 -3.1970 -0.8683 17 14 7.0090 -2.0713 -2.6172 18 1 8.3604 -2.2366 -2.0242 19 1 6.7370 -3.1945 -3.5499 20 1 6.9477 -0.7862 -3.3587 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8306 -0.5262 0.7813 25 1 1.7358 1.8602 0.9391 26 1 1.5614 1.9273 -0.8311 27 1 3.5877 3.2747 0.8605 28 1 4.1089 3.3213 -0.8569 29 1 5.9841 3.2041 1.1138 30 1 6.1984 2.2222 -0.3706 31 1 5.3548 1.3585 2.3894 32 1 6.2179 0.4323 1.1299 33 1 4.1392 -1.6473 2.4432 34 1 4.8703 -2.7844 1.2852 35 1 5.8190 -1.4113 1.9039 36 1 5.4380 -4.0323 -1.2879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252687700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:47 Heat of formation + Delta-G solvation = 4.100525 kcal Electronic energy + Delta-G solvation = -15316.552831 eV Core-core repulsion = 13028.417718 eV Total energy + Delta-G solvation = -2288.135114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.62999 -35.03354 -33.57728 -31.05726 -29.46533 -27.28587 -25.32481 -24.97056 -22.90929 -20.88147 -19.78749 -18.77241 -16.54119 -15.74015 -15.11397 -14.36014 -14.10035 -13.85861 -13.11868 -12.84871 -12.67260 -12.32674 -12.09952 -11.60979 -11.39532 -11.09228 -10.92606 -10.83087 -10.62424 -10.36706 -10.11784 -10.04012 -9.92007 -9.84269 -9.59536 -8.95103 -8.27707 -7.80623 -7.07881 -5.89722 -3.98716 3.31723 3.39108 3.41673 4.47648 4.80379 5.11721 5.36159 5.37024 5.53528 5.71474 5.72805 5.80699 5.99795 6.02467 6.18820 6.21331 6.24409 6.31941 6.41401 6.56886 6.80965 6.94224 7.02222 7.06730 7.14354 7.30514 7.61554 7.72260 7.80292 8.01595 8.11665 8.30003 8.43765 8.55021 9.10763 9.66555 11.11832 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.012241 C = 0.010301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.449368 B = 2286.891312 C = 2717.575873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.686 5.686 3 C 0.083 3.917 4 C 0.076 3.924 5 H 0.075 0.925 6 C -0.124 4.124 7 C -0.137 4.137 8 C 0.050 3.950 9 N -0.529 5.529 10 C 0.195 3.805 11 H 0.062 0.938 12 C -0.129 4.129 13 C -0.533 4.533 14 H 0.054 0.946 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.061 0.939 22 H 0.011 0.989 23 H 0.055 0.945 24 H 0.356 0.644 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.011 0.989 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 8.026 2.553 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.319 5.319 3 C -0.048 4.048 4 C -0.033 4.033 5 H 0.093 0.907 6 C -0.162 4.162 7 C -0.175 4.175 8 C -0.079 4.079 9 N -0.253 5.253 10 C 0.088 3.912 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.573 4.573 14 H 0.072 0.928 15 C -0.134 4.134 16 N -0.525 5.525 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.080 0.920 22 H 0.029 0.971 23 H 0.074 0.926 24 H 0.177 0.823 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.340 7.695 2.268 9.121 hybrid contribution 1.191 0.209 -0.616 1.357 sum -3.149 7.904 1.652 8.667 Atomic orbital electron populations 1.22153 0.89553 1.01141 0.99182 1.60422 1.05782 1.14234 1.51456 1.21854 0.95019 0.89474 0.98410 1.22470 0.92589 0.91387 0.96891 0.90682 1.22688 0.96202 0.97152 1.00193 1.22738 0.96536 0.98203 1.00071 1.22608 0.93932 0.94237 0.97085 1.63792 1.21900 1.04359 1.35275 1.19619 0.97117 0.82878 0.91586 0.92007 1.21801 0.97344 1.03125 0.96433 1.21719 1.23471 0.93011 1.19067 0.92775 1.24883 0.96160 0.95767 0.96633 1.69891 1.42701 0.97889 1.41992 0.86736 0.82105 0.77541 0.82414 1.20942 1.21302 1.20181 0.91988 0.97091 0.92587 0.82275 0.96034 0.92326 0.91925 0.92139 0.92510 0.91821 0.93266 0.91167 0.96993 0.90254 0.95730 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.69 60.06 0.64 1.08 16 2 N -0.69 -12.65 5.83 -121.13 -0.71 -13.35 16 3 C 0.08 1.43 5.50 -3.83 -0.02 1.41 16 4 C 0.08 1.47 2.51 -66.19 -0.17 1.30 16 5 H 0.08 1.71 6.73 -51.93 -0.35 1.36 16 6 C -0.12 -2.02 6.49 -24.60 -0.16 -2.18 16 7 C -0.14 -2.35 6.71 -24.91 -0.17 -2.51 16 8 C 0.05 0.98 5.47 -2.84 -0.02 0.97 16 9 N -0.53 -11.13 4.42 -216.86 -0.96 -12.09 16 10 C 0.19 4.77 1.82 -68.87 -0.13 4.64 16 11 H 0.06 1.65 5.92 -51.93 -0.31 1.34 16 12 C -0.13 -3.13 8.71 37.16 0.32 -2.80 16 13 C -0.53 -14.26 6.18 -34.44 -0.21 -14.47 16 14 H 0.05 1.46 6.30 -52.48 -0.33 1.13 16 15 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 16 N -0.89 -25.22 11.39 55.43 0.63 -24.59 16 17 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.36 7.03 6.78 -39.29 -0.27 6.76 16 25 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 26 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 27 H 0.06 0.95 7.98 -51.92 -0.41 0.53 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.15 7.79 -51.93 -0.40 0.75 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.56 5.64 -51.93 -0.29 1.26 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 2.10 6.27 -51.93 -0.33 1.78 16 35 H 0.02 0.58 6.97 -51.93 -0.36 0.22 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 273.72 15.07 4.12 4.12 Total: -1.00 -27.59 273.72 -7.91 -35.50 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.99 Total: 4.75 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 0.00 Total: -10.80 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -1.03 Total: -50.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.59 -7.91 -35.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252687700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.603 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds