Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00173 * 2 1 4 4 C 1.53000 * 109.47436 * 186.02521 * 3 2 1 5 5 H 1.09006 * 110.41553 * 66.56318 * 4 3 2 6 6 C 1.54903 * 110.37947 * 188.87632 * 4 3 2 7 7 C 1.55138 * 101.65507 * 155.90008 * 6 4 3 8 8 C 1.54318 * 103.01947 * 324.34794 * 7 6 4 9 9 N 1.47443 * 107.23059 * 22.28354 * 8 7 6 10 10 C 1.46894 * 110.99832 * 123.26130 * 9 8 7 11 11 H 1.09004 * 109.47242 * 184.65068 * 10 9 8 12 12 C 1.53001 * 109.47652 * 64.64862 * 10 9 8 13 13 C 1.50699 * 109.47079 * 304.64700 * 10 9 8 14 14 H 1.08006 * 119.99904 * 0.02562 * 13 10 9 15 15 C 1.37882 * 120.00257 * 179.72689 * 13 10 9 16 16 N 1.31513 * 119.99801 * 0.27105 * 15 13 10 17 17 Si 1.86795 * 119.99925 * 180.27808 * 15 13 10 18 18 H 1.48499 * 109.47386 * 89.99887 * 17 15 13 19 19 H 1.48503 * 109.46692 * 209.99647 * 17 15 13 20 20 H 1.48494 * 109.47274 * 329.99762 * 17 15 13 21 21 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46887 * 299.99785 * 1 2 3 23 23 H 1.09002 * 109.47042 * 59.99563 * 1 2 3 24 24 H 1.00903 * 111.00086 * 123.95858 * 2 1 3 25 25 H 1.09006 * 109.46917 * 66.02733 * 3 2 1 26 26 H 1.09002 * 109.47459 * 306.03054 * 3 2 1 27 27 H 1.09009 * 110.98723 * 37.80721 * 6 4 3 28 28 H 1.09005 * 111.02517 * 274.01107 * 6 4 3 29 29 H 1.09007 * 110.70699 * 205.96685 * 7 6 4 30 30 H 1.09000 * 110.85533 * 82.80507 * 7 6 4 31 31 H 1.09000 * 109.88701 * 262.87809 * 8 7 6 32 32 H 1.08993 * 109.88736 * 141.69129 * 8 7 6 33 33 H 1.09002 * 109.47214 * 53.38839 * 12 10 9 34 34 H 1.08995 * 109.47587 * 173.39447 * 12 10 9 35 35 H 1.09002 * 109.47234 * 293.39648 * 12 10 9 36 36 H 0.97000 * 120.00039 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5175 1.3334 -0.1514 5 1 3.7924 0.9533 -1.1354 6 6 4.1168 2.7448 0.0682 7 6 5.5679 2.4056 0.4994 8 6 5.3918 1.1154 1.3276 9 7 4.1196 0.4983 0.9096 10 6 4.3311 -0.8775 0.4403 11 1 3.3919 -1.2806 0.0612 12 6 4.8254 -1.7423 1.6016 13 6 5.3596 -0.8801 -0.6612 14 1 5.8113 0.0476 -0.9803 15 6 5.7285 -2.0674 -1.2573 16 7 5.1788 -3.1970 -0.8683 17 14 7.0090 -2.0713 -2.6172 18 1 8.3604 -2.2366 -2.0242 19 1 6.7370 -3.1945 -3.5499 20 1 6.9477 -0.7862 -3.3587 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8306 -0.5262 0.7813 25 1 1.7358 1.8602 0.9391 26 1 1.5614 1.9273 -0.8311 27 1 3.5877 3.2747 0.8605 28 1 4.1089 3.3213 -0.8569 29 1 5.9841 3.2041 1.1138 30 1 6.1984 2.2222 -0.3706 31 1 5.3548 1.3585 2.3894 32 1 6.2179 0.4323 1.1299 33 1 4.1392 -1.6473 2.4432 34 1 4.8703 -2.7844 1.2852 35 1 5.8190 -1.4113 1.9039 36 1 5.4380 -4.0323 -1.2879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252687700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -14.622824 kcal Electronic energy + Delta-G solvation = -15317.364737 eV Core-core repulsion = 13028.417718 eV Total energy + Delta-G solvation = -2288.947019 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21688 -36.44679 -35.43927 -32.94651 -30.88538 -29.03678 -27.17522 -26.56129 -24.35490 -22.49265 -21.31983 -20.49227 -18.37938 -17.43018 -16.84205 -15.99487 -15.72863 -15.19026 -14.68566 -14.54924 -14.15983 -13.96554 -13.74021 -13.08130 -13.02844 -12.83858 -12.65312 -12.55581 -12.35894 -12.02540 -11.84752 -11.78987 -11.47188 -11.43494 -11.31652 -10.91309 -10.37113 -9.18109 -8.83021 -7.97092 -6.13836 1.37111 1.39303 1.47226 2.44139 3.23697 3.44863 3.57930 3.96760 4.14259 4.31097 4.47075 4.51664 4.65801 4.73196 4.82074 4.88945 4.94158 5.00927 5.04757 5.05882 5.14515 5.22208 5.24711 5.33623 5.45703 5.55984 5.67037 5.83901 6.10043 6.29486 6.35611 6.49580 6.59678 6.74829 7.07944 7.54152 9.00296 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.012241 C = 0.010301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.449368 B = 2286.891312 C = 2717.575873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.712 5.712 3 C 0.088 3.912 4 C 0.071 3.929 5 H 0.034 0.966 6 C -0.113 4.113 7 C -0.132 4.132 8 C 0.045 3.955 9 N -0.525 5.525 10 C 0.202 3.798 11 H 0.039 0.961 12 C -0.117 4.117 13 C -0.535 4.535 14 H 0.047 0.953 15 C 0.019 3.981 16 N -0.913 5.913 17 Si 0.940 3.060 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.063 0.937 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.345 0.655 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 9.914 2.764 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.344 5.344 3 C -0.042 4.042 4 C -0.038 4.038 5 H 0.052 0.948 6 C -0.151 4.151 7 C -0.170 4.170 8 C -0.083 4.083 9 N -0.249 5.249 10 C 0.095 3.905 11 H 0.057 0.943 12 C -0.175 4.175 13 C -0.574 4.574 14 H 0.065 0.935 15 C -0.181 4.181 16 N -0.553 5.553 17 Si 0.767 3.233 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.082 0.918 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.164 0.836 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.657 9.606 2.475 10.958 hybrid contribution 1.257 -0.358 -0.659 1.464 sum -3.400 9.248 1.816 10.019 Atomic orbital electron populations 1.22187 0.87436 1.01766 1.00369 1.60423 1.07980 1.14834 1.51187 1.21821 0.93439 0.89293 0.99599 1.22526 0.94219 0.92841 0.94207 0.94784 1.22668 0.95223 0.95383 1.01841 1.22699 0.97160 0.97675 0.99503 1.22656 0.92198 0.94891 0.98538 1.63774 1.22533 1.03120 1.35489 1.19362 0.95264 0.84957 0.90943 0.94282 1.21624 0.97491 1.01484 0.96926 1.21967 1.23474 0.92584 1.19419 0.93475 1.25556 0.98053 0.95680 0.98769 1.70012 1.43982 0.98202 1.43092 0.85843 0.80056 0.77386 0.80029 1.20503 1.21176 1.19961 0.91771 0.95526 0.91555 0.83591 0.94739 0.90833 0.89695 0.90393 0.89317 0.93400 0.91592 0.94216 0.95316 0.92798 0.96152 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.69 127.69 1.36 2.25 16 2 N -0.71 -25.73 5.83 -537.15 -3.13 -28.86 16 3 C 0.09 2.90 5.50 86.30 0.47 3.37 16 4 C 0.07 2.68 2.51 45.38 0.11 2.80 16 5 H 0.03 1.56 6.73 -2.38 -0.02 1.55 16 6 C -0.11 -3.35 6.49 31.98 0.21 -3.14 16 7 C -0.13 -4.21 6.71 31.77 0.21 -4.00 16 8 C 0.05 1.74 5.47 86.65 0.47 2.22 16 9 N -0.53 -21.76 4.42 -840.02 -3.71 -25.47 16 10 C 0.20 10.06 1.82 44.17 0.08 10.14 16 11 H 0.04 2.14 5.92 -2.39 -0.01 2.13 16 12 C -0.12 -5.76 8.71 71.98 0.63 -5.13 16 13 C -0.54 -29.08 6.18 25.60 0.16 -28.93 16 14 H 0.05 2.58 6.30 -2.91 -0.02 2.56 16 15 C 0.02 1.03 5.30 84.66 0.45 1.48 16 16 N -0.91 -53.05 11.39 21.45 0.24 -52.81 16 17 Si 0.94 44.57 29.54 68.60 2.03 46.59 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.34 13.59 6.78 -89.69 -0.61 12.98 16 25 H 0.03 1.05 8.05 -2.38 -0.02 1.03 16 26 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 27 H 0.08 2.19 7.98 -2.38 -0.02 2.17 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.05 1.67 7.79 -2.39 -0.02 1.65 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 2.92 6.27 -2.39 -0.01 2.90 16 35 H 0.02 0.96 6.97 -2.39 -0.02 0.95 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -59.29 273.72 0.03 -59.26 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.44 Total: 20.22 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.16 Total: -18.93 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -6.60 Total: -107.14 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -59.29 0.03 -59.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252687700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.635 kcal (2) G-P(sol) polarization free energy of solvation -59.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds