Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99924 * 2 1 4 4 C 1.52997 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.90863 * 294.64967 * 4 3 2 6 6 C 1.53997 * 109.91953 * 173.54237 * 4 3 2 7 7 C 1.54595 * 105.14003 * 239.22608 * 6 4 3 8 8 C 1.54937 * 103.08316 * 337.94991 * 7 6 4 9 9 N 1.47910 * 110.08419 * 55.85393 * 4 3 2 10 10 C 1.46893 * 110.99795 * 265.29108 * 9 4 3 11 11 H 1.08999 * 109.47444 * 50.96172 * 10 9 4 12 12 C 1.52998 * 109.47319 * 290.96009 * 10 9 4 13 13 C 1.50701 * 109.47273 * 170.96130 * 10 9 4 14 14 H 1.08001 * 119.99563 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00375 * 180.02562 * 13 10 9 16 16 N 1.31510 * 119.99939 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99930 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47380 * 59.99955 * 17 15 13 19 19 H 1.48508 * 109.47097 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47306 * 299.99729 * 17 15 13 21 21 H 1.08993 * 109.47541 * 300.00500 * 1 2 3 22 22 H 1.09007 * 109.46764 * 60.00832 * 1 2 3 23 23 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 24 24 H 1.00897 * 111.00607 * 236.04132 * 2 1 3 25 25 H 1.08991 * 109.47657 * 59.99302 * 3 2 1 26 26 H 1.08999 * 109.46639 * 299.99379 * 3 2 1 27 27 H 1.08997 * 110.30793 * 120.30695 * 6 4 3 28 28 H 1.08995 * 110.38927 * 358.18316 * 6 4 3 29 29 H 1.08994 * 110.72564 * 96.39683 * 7 6 4 30 30 H 1.09002 * 110.72305 * 219.50479 * 7 6 4 31 31 H 1.09000 * 110.66944 * 155.93835 * 8 7 6 32 32 H 1.09006 * 110.67302 * 279.07451 * 8 7 6 33 33 H 1.09002 * 109.46984 * 51.95231 * 12 10 9 34 34 H 1.09005 * 109.47507 * 171.94585 * 12 10 9 35 35 H 1.08998 * 109.47523 * 291.94820 * 12 10 9 36 36 H 0.96998 * 120.00378 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3307 0.0006 5 1 3.8841 0.8937 0.9324 6 6 4.0877 2.7548 -0.1622 7 6 4.9427 2.7064 -1.4493 8 6 5.2701 1.1991 -1.5963 9 7 4.0123 0.5375 -1.1487 10 6 4.2615 -0.8565 -0.7584 11 1 3.3846 -1.2529 -0.2466 12 6 5.4691 -0.9155 0.1792 13 6 4.5403 -1.6806 -1.9889 14 1 4.5334 -1.2151 -2.9634 15 6 4.8042 -3.0287 -1.8706 16 7 4.8130 -3.5954 -0.6839 17 14 5.1504 -4.0499 -3.3959 18 1 6.3459 -3.5102 -4.0922 19 1 5.4023 -5.4593 -3.0014 20 1 3.9790 -3.9923 -4.3067 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 1.6459 1.8949 0.8898 26 1 1.6459 1.8947 -0.8901 27 1 4.7084 3.0165 0.6947 28 1 3.2759 3.4735 -0.2741 29 1 4.3705 3.0620 -2.3061 30 1 5.8557 3.2894 -1.3281 31 1 5.4900 0.9527 -2.6350 32 1 6.1024 0.9213 -0.9494 33 1 5.3282 -0.2098 0.9980 34 1 5.5679 -1.9237 0.5817 35 1 6.3716 -0.6550 -0.3737 36 1 4.9983 -4.5439 -0.6007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252687701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = 9.767488 kcal Electronic energy + Delta-G solvation = -15227.164197 eV Core-core repulsion = 12939.274821 eV Total energy + Delta-G solvation = -2287.889376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.78676 -34.98064 -33.71130 -31.16155 -29.51792 -27.24759 -25.29669 -25.13383 -22.95576 -21.14542 -20.05089 -18.66580 -16.24214 -15.76708 -15.11035 -14.58545 -14.13094 -13.78142 -13.22392 -13.04809 -12.89483 -12.63232 -11.73961 -11.60160 -11.46816 -11.34060 -10.93836 -10.87362 -10.59432 -10.55993 -10.27914 -10.17157 -10.06472 -9.78977 -9.68395 -8.73684 -8.29425 -7.83068 -7.16155 -5.93584 -3.96646 3.35812 3.40298 3.43097 4.46509 4.80379 5.02367 5.28408 5.38299 5.42533 5.57372 5.70836 5.77638 5.93178 5.93722 6.10500 6.11900 6.21102 6.22966 6.31460 6.50148 6.63390 6.71772 6.74122 6.89516 6.94086 7.24400 7.46585 7.61462 7.78218 7.92385 8.07942 8.23118 8.43479 8.66108 9.09735 9.67853 11.13622 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.011176 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.665192 B = 2504.693461 C = 3056.110557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.695 5.695 3 C 0.082 3.918 4 C 0.058 3.942 5 H 0.057 0.943 6 C -0.123 4.123 7 C -0.126 4.126 8 C 0.042 3.958 9 N -0.508 5.508 10 C 0.195 3.805 11 H 0.062 0.938 12 C -0.166 4.166 13 C -0.500 4.500 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.053 0.947 22 H 0.013 0.987 23 H 0.062 0.938 24 H 0.367 0.633 25 H 0.057 0.943 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 9.458 0.978 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.330 5.330 3 C -0.048 4.048 4 C -0.052 4.052 5 H 0.075 0.925 6 C -0.162 4.162 7 C -0.164 4.164 8 C -0.086 4.086 9 N -0.233 5.233 10 C 0.088 3.912 11 H 0.080 0.920 12 C -0.225 4.225 13 C -0.539 4.539 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.204 1.204 21 H 0.072 0.928 22 H 0.031 0.969 23 H 0.081 0.919 24 H 0.190 0.810 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.232 9.153 1.317 9.796 hybrid contribution 0.660 -0.406 -1.001 1.266 sum -2.572 8.748 0.316 9.123 Atomic orbital electron populations 1.22123 0.89470 1.01226 0.99124 1.60541 1.06157 1.14006 1.52267 1.21884 0.94361 0.89899 0.98638 1.22380 0.94253 0.92914 0.95643 0.92510 1.22379 0.99059 0.96898 0.97849 1.22511 0.98727 0.97742 0.97441 1.23169 0.93352 0.91090 1.01019 1.65046 1.25435 1.03968 1.28840 1.19613 0.94542 0.82664 0.94370 0.92037 1.22361 1.00190 1.01922 0.98027 1.21060 1.47127 0.92758 0.92944 0.92360 1.24906 0.95704 0.97808 0.95752 1.69904 1.49883 1.11418 1.21900 0.86642 0.78676 0.79090 0.83406 1.20536 1.21511 1.20375 0.92785 0.96868 0.91913 0.81020 0.92432 0.95653 0.92292 0.91970 0.91741 0.92328 0.90851 0.93303 0.97383 0.89993 0.94968 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.70 60.06 0.64 1.11 16 2 N -0.69 -13.08 6.03 -121.14 -0.73 -13.81 16 3 C 0.08 1.42 5.22 -3.82 -0.02 1.40 16 4 C 0.06 1.06 2.60 -66.64 -0.17 0.89 16 5 H 0.06 1.15 6.07 -51.93 -0.32 0.84 16 6 C -0.12 -1.87 6.57 -25.37 -0.17 -2.04 16 7 C -0.13 -1.95 7.05 -24.87 -0.18 -2.13 16 8 C 0.04 0.81 5.83 -1.63 -0.01 0.80 16 9 N -0.51 -10.76 4.46 -215.63 -0.96 -11.72 16 10 C 0.19 4.81 1.65 -68.87 -0.11 4.70 16 11 H 0.06 1.65 5.84 -51.93 -0.30 1.35 16 12 C -0.17 -4.06 7.79 37.16 0.29 -3.77 16 13 C -0.50 -13.58 8.32 -34.44 -0.29 -13.87 16 14 H 0.06 1.60 7.78 -52.49 -0.41 1.19 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -25.45 11.42 55.43 0.63 -24.81 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.01 0.19 8.14 -51.92 -0.42 -0.23 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.37 7.84 6.29 -39.29 -0.25 7.59 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.84 7.69 -51.93 -0.40 0.44 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.48 8.11 -51.93 -0.42 1.05 16 32 H 0.05 0.99 5.47 -51.93 -0.28 0.71 16 33 H 0.01 0.17 6.32 -51.93 -0.33 -0.16 16 34 H 0.08 2.21 6.33 -51.93 -0.33 1.88 16 35 H 0.03 0.77 6.42 -51.93 -0.33 0.44 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 273.56 15.07 4.12 4.12 Total: -1.00 -27.71 273.56 -7.95 -35.66 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.89 Total: 5.49 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.11 Total: -11.37 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -1.06 Total: -50.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.71 -7.95 -35.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252687701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.424 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds