Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99924 * 2 1 4 4 C 1.52997 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.90863 * 294.64967 * 4 3 2 6 6 C 1.53997 * 109.91953 * 173.54237 * 4 3 2 7 7 C 1.54595 * 105.14003 * 239.22608 * 6 4 3 8 8 C 1.54937 * 103.08316 * 337.94991 * 7 6 4 9 9 N 1.47910 * 110.08419 * 55.85393 * 4 3 2 10 10 C 1.46893 * 110.99795 * 265.29108 * 9 4 3 11 11 H 1.08999 * 109.47444 * 50.96172 * 10 9 4 12 12 C 1.52998 * 109.47319 * 290.96009 * 10 9 4 13 13 C 1.50701 * 109.47273 * 170.96130 * 10 9 4 14 14 H 1.08001 * 119.99563 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00375 * 180.02562 * 13 10 9 16 16 N 1.31510 * 119.99939 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99930 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47380 * 59.99955 * 17 15 13 19 19 H 1.48508 * 109.47097 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47306 * 299.99729 * 17 15 13 21 21 H 1.08993 * 109.47541 * 300.00500 * 1 2 3 22 22 H 1.09007 * 109.46764 * 60.00832 * 1 2 3 23 23 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 24 24 H 1.00897 * 111.00607 * 236.04132 * 2 1 3 25 25 H 1.08991 * 109.47657 * 59.99302 * 3 2 1 26 26 H 1.08999 * 109.46639 * 299.99379 * 3 2 1 27 27 H 1.08997 * 110.30793 * 120.30695 * 6 4 3 28 28 H 1.08995 * 110.38927 * 358.18316 * 6 4 3 29 29 H 1.08994 * 110.72564 * 96.39683 * 7 6 4 30 30 H 1.09002 * 110.72305 * 219.50479 * 7 6 4 31 31 H 1.09000 * 110.66944 * 155.93835 * 8 7 6 32 32 H 1.09006 * 110.67302 * 279.07451 * 8 7 6 33 33 H 1.09002 * 109.46984 * 51.95231 * 12 10 9 34 34 H 1.09005 * 109.47507 * 171.94585 * 12 10 9 35 35 H 1.08998 * 109.47523 * 291.94820 * 12 10 9 36 36 H 0.96998 * 120.00378 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3307 0.0006 5 1 3.8841 0.8937 0.9324 6 6 4.0877 2.7548 -0.1622 7 6 4.9427 2.7064 -1.4493 8 6 5.2701 1.1991 -1.5963 9 7 4.0123 0.5375 -1.1487 10 6 4.2615 -0.8565 -0.7584 11 1 3.3846 -1.2529 -0.2466 12 6 5.4691 -0.9155 0.1792 13 6 4.5403 -1.6806 -1.9889 14 1 4.5334 -1.2151 -2.9634 15 6 4.8042 -3.0287 -1.8706 16 7 4.8130 -3.5954 -0.6839 17 14 5.1504 -4.0499 -3.3959 18 1 6.3459 -3.5102 -4.0922 19 1 5.4023 -5.4593 -3.0014 20 1 3.9790 -3.9923 -4.3067 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 1.6459 1.8949 0.8898 26 1 1.6459 1.8947 -0.8901 27 1 4.7084 3.0165 0.6947 28 1 3.2759 3.4735 -0.2741 29 1 4.3705 3.0620 -2.3061 30 1 5.8557 3.2894 -1.3281 31 1 5.4900 0.9527 -2.6350 32 1 6.1024 0.9213 -0.9494 33 1 5.3282 -0.2098 0.9980 34 1 5.5679 -1.9237 0.5817 35 1 6.3716 -0.6550 -0.3737 36 1 4.9983 -4.5439 -0.6007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252687701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = -9.150845 kcal Electronic energy + Delta-G solvation = -15227.984558 eV Core-core repulsion = 12939.274821 eV Total energy + Delta-G solvation = -2288.709736 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32590 -36.41270 -35.54595 -33.01738 -30.89923 -28.99200 -27.25944 -26.60135 -24.43498 -22.72634 -21.50878 -20.30671 -18.11103 -17.42443 -16.84612 -15.99112 -15.89009 -15.21515 -14.70768 -14.56956 -14.48657 -14.27803 -13.40789 -13.34949 -12.96904 -12.77919 -12.66268 -12.47964 -12.39163 -12.11469 -11.96291 -11.85260 -11.59995 -11.54583 -11.20310 -10.74267 -10.38724 -9.23238 -8.84116 -8.04520 -6.13958 1.43582 1.44333 1.51931 2.45958 3.24785 3.42416 3.53360 3.97722 4.05663 4.24679 4.41588 4.44095 4.60027 4.68451 4.77168 4.83582 4.87565 4.91936 4.94751 5.02097 5.04625 5.10430 5.18427 5.23224 5.35427 5.45754 5.63824 5.78218 5.88068 6.21433 6.35171 6.49564 6.58166 6.78850 7.00300 7.54641 9.01380 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.011176 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.665192 B = 2504.693461 C = 3056.110557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.717 5.717 3 C 0.086 3.914 4 C 0.054 3.946 5 H 0.034 0.966 6 C -0.116 4.116 7 C -0.114 4.114 8 C 0.035 3.965 9 N -0.516 5.516 10 C 0.203 3.797 11 H 0.038 0.962 12 C -0.151 4.151 13 C -0.512 4.512 14 H 0.050 0.950 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.072 0.928 22 H 0.022 0.978 23 H 0.061 0.939 24 H 0.348 0.652 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.022 0.978 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.255 11.153 0.616 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.350 5.350 3 C -0.044 4.044 4 C -0.056 4.056 5 H 0.052 0.948 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.093 4.093 9 N -0.240 5.240 10 C 0.095 3.905 11 H 0.056 0.944 12 C -0.210 4.210 13 C -0.550 4.550 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.558 5.558 17 Si 0.780 3.220 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.090 0.910 22 H 0.041 0.959 23 H 0.080 0.920 24 H 0.168 0.832 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.593 10.877 0.961 11.495 hybrid contribution 0.742 -0.909 -0.865 1.458 sum -2.850 9.968 0.096 10.368 Atomic orbital electron populations 1.22177 0.87540 1.01667 1.00399 1.60569 1.08153 1.14842 1.51422 1.21922 0.93383 0.89308 0.99788 1.22492 0.95273 0.94406 0.93403 0.94774 1.22373 0.99873 0.94973 0.98195 1.22460 1.00088 0.94682 0.97968 1.23208 0.92278 0.94066 0.99740 1.64942 1.26262 1.02667 1.30113 1.19315 0.93299 0.84701 0.93142 0.94407 1.22172 1.00118 1.00440 0.98308 1.21323 1.46843 0.93406 0.93450 0.93222 1.25618 0.95664 0.98917 0.98328 1.70036 1.50690 1.11504 1.23609 0.85693 0.78598 0.77551 0.80203 1.20047 1.21249 1.19897 0.90950 0.95942 0.92025 0.83197 0.90278 0.95171 0.90856 0.89509 0.90916 0.89777 0.92295 0.94563 0.95908 0.92869 0.95351 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.70 127.69 1.37 2.30 16 2 N -0.72 -26.63 6.03 -537.16 -3.24 -29.87 16 3 C 0.09 2.79 5.22 86.30 0.45 3.24 16 4 C 0.05 1.90 2.60 45.06 0.12 2.01 16 5 H 0.03 1.36 6.07 -2.39 -0.01 1.35 16 6 C -0.12 -3.13 6.57 31.47 0.21 -2.92 16 7 C -0.11 -3.19 7.05 31.80 0.22 -2.97 16 8 C 0.03 1.33 5.83 86.56 0.50 1.83 16 9 N -0.52 -21.68 4.46 -836.13 -3.73 -25.40 16 10 C 0.20 10.24 1.65 44.17 0.07 10.31 16 11 H 0.04 2.10 5.84 -2.39 -0.01 2.09 16 12 C -0.15 -7.55 7.79 71.98 0.56 -6.99 16 13 C -0.51 -28.27 8.32 25.60 0.21 -28.06 16 14 H 0.05 2.77 7.78 -2.91 -0.02 2.74 16 15 C 0.01 0.74 5.30 84.66 0.45 1.19 16 16 N -0.92 -53.50 11.42 21.45 0.24 -53.26 16 17 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.35 15.10 6.29 -89.70 -0.56 14.53 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.09 1.96 7.69 -2.39 -0.02 1.95 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 32 H 0.04 1.46 5.47 -2.38 -0.01 1.44 16 33 H 0.02 1.02 6.32 -2.39 -0.02 1.01 16 34 H 0.05 2.94 6.33 -2.38 -0.02 2.93 16 35 H 0.03 1.38 6.42 -2.39 -0.02 1.37 16 36 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -59.75 273.56 -0.05 -59.80 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.48 Total: 22.37 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.16 Total: -20.06 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -6.72 Total: -108.53 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -59.75 -0.05 -59.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252687701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.646 kcal (2) G-P(sol) polarization free energy of solvation -59.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds