Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46746 * 2 1 4 4 C 1.50701 * 109.46948 * 240.00449 * 2 1 3 5 5 H 1.08004 * 119.99246 * 245.49178 * 4 2 1 6 6 C 1.37875 * 120.00564 * 65.48890 * 4 2 1 7 7 N 1.31513 * 119.99830 * 355.15295 * 6 4 2 8 8 Si 1.86797 * 119.99885 * 175.15119 * 6 4 2 9 9 H 1.48499 * 109.47312 * 95.00227 * 8 6 4 10 10 H 1.48502 * 109.46882 * 215.00018 * 8 6 4 11 11 H 1.48497 * 109.47366 * 334.99745 * 8 6 4 12 12 N 1.46897 * 109.46917 * 120.00178 * 2 1 3 13 13 C 1.48528 * 110.99837 * 292.55918 * 12 2 1 14 14 C 1.54938 * 103.22779 * 200.27885 * 13 12 2 15 15 C 1.54595 * 102.91832 * 37.41791 * 14 13 12 16 16 H 1.09002 * 110.30939 * 96.95910 * 15 14 13 17 17 C 1.52995 * 110.39367 * 219.08037 * 15 14 13 18 18 H 1.09005 * 109.47032 * 57.15283 * 17 15 14 19 19 C 1.53000 * 109.47493 * 297.15584 * 17 15 14 20 20 N 1.46899 * 109.47384 * 177.15719 * 17 15 14 21 21 C 1.47899 * 110.99624 * 175.16736 * 12 2 1 22 22 H 1.08994 * 109.47331 * 304.98079 * 1 2 3 23 23 H 1.09000 * 109.47217 * 64.98653 * 1 2 3 24 24 H 1.09004 * 109.46858 * 184.97932 * 1 2 3 25 25 H 0.96997 * 120.00098 * 179.97438 * 7 6 4 26 26 H 1.08996 * 110.67036 * 318.71834 * 13 12 2 27 27 H 1.09006 * 110.66500 * 81.84823 * 13 12 2 28 28 H 1.08999 * 110.72679 * 279.06106 * 14 13 12 29 29 H 1.09003 * 110.72389 * 155.77094 * 14 13 12 30 30 H 1.09000 * 109.47051 * 59.99477 * 19 17 15 31 31 H 1.08996 * 109.47988 * 179.97438 * 19 17 15 32 32 H 1.09005 * 109.46758 * 300.00437 * 19 17 15 33 33 H 1.00893 * 111.00235 * 60.00005 * 20 17 15 34 34 H 1.00898 * 110.99990 * 183.95939 * 20 17 15 35 35 H 1.08998 * 109.92152 * 26.48900 * 21 12 2 36 36 H 1.08996 * 109.91861 * 265.19448 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5781 -1.6373 -1.1339 6 6 1.7951 -0.1770 -2.4796 7 7 1.0499 0.8994 -2.6043 8 14 2.5323 -0.9833 -3.9948 9 1 1.5405 -1.9126 -4.5931 10 1 2.8921 0.0621 -4.9863 11 1 3.7504 -1.7403 -3.6096 12 7 2.0197 -0.6925 1.1994 13 6 1.6955 0.0769 2.4278 14 6 2.6969 -0.4811 3.4702 15 6 3.9783 -0.7028 2.6342 16 1 4.6536 0.1456 2.7447 17 6 4.6766 -1.9953 3.0615 18 1 3.9864 -2.8326 2.9577 19 6 5.1193 -1.8773 4.5213 20 7 5.8522 -2.2213 2.2101 21 6 3.4935 -0.8138 1.1768 22 1 -0.3633 0.5891 0.8419 23 1 -0.3634 0.4345 -0.9313 24 1 -0.3633 -1.0238 0.0892 25 1 0.8833 1.2749 -3.4830 26 1 1.8596 1.1426 2.2688 27 1 0.6687 -0.1129 2.7409 28 1 2.3382 -1.4237 3.8837 29 1 2.8743 0.2463 4.2624 30 1 4.2470 -1.7096 5.1531 31 1 5.6164 -2.7983 4.8259 32 1 5.8094 -1.0400 4.6251 33 1 6.5076 -1.4583 2.2887 34 1 6.2938 -3.1015 2.4297 35 1 3.9232 -0.0091 0.5802 36 1 3.7802 -1.7804 0.7627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252786922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = -7.139515 kcal Electronic energy + Delta-G solvation = -14885.503712 eV Core-core repulsion = 12596.881194 eV Total energy + Delta-G solvation = -2288.622518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.71789 -35.73481 -33.25317 -30.94363 -28.79175 -28.16296 -27.01021 -24.93258 -21.89801 -21.37372 -19.60652 -19.18760 -16.14571 -15.85312 -15.13023 -14.90507 -14.16291 -14.04177 -13.15966 -13.09787 -12.99951 -12.42576 -11.95363 -11.77700 -11.59603 -11.10030 -11.04260 -10.84493 -10.58058 -10.45533 -10.40025 -10.16502 -9.96724 -9.82079 -9.63021 -8.80524 -8.50044 -8.31538 -7.11566 -5.93674 -3.96689 3.36544 3.42832 3.48788 4.49592 4.64113 4.93266 5.11007 5.23747 5.37182 5.39585 5.46980 5.53553 5.72001 5.91684 6.00316 6.02226 6.15006 6.29370 6.39725 6.50686 6.63298 6.87530 6.92490 7.03892 7.15556 7.28058 7.32995 7.56505 7.59892 7.77915 7.93594 8.25085 8.42616 8.68005 9.11986 9.68326 11.13925 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.009042 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.760388 B = 3095.925551 C = 3758.389218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.203 3.797 3 H 0.000 1.000 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.515 5.515 13 C 0.034 3.966 14 C -0.115 4.115 15 C -0.094 4.094 16 H 0.061 0.939 17 C 0.098 3.902 18 H 0.083 0.917 19 C -0.186 4.186 20 N -0.840 5.840 21 C 0.070 3.930 22 H 0.005 0.995 23 H 0.080 0.920 24 H 0.033 0.967 25 H 0.259 0.741 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.336 0.664 34 H 0.336 0.664 35 H 0.038 0.962 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -3.086 11.708 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.096 3.904 3 H 0.018 0.982 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.197 1.197 12 N -0.240 5.240 13 C -0.095 4.095 14 C -0.154 4.154 15 C -0.114 4.114 16 H 0.080 0.920 17 C -0.014 4.014 18 H 0.101 0.899 19 C -0.245 4.245 20 N -0.368 5.368 21 C -0.058 4.058 22 H 0.024 0.976 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.057 0.943 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.535 -3.460 10.923 12.725 hybrid contribution 1.267 0.557 0.017 1.384 sum 6.802 -2.902 10.940 13.205 Atomic orbital electron populations 1.21745 0.97909 0.98734 1.00141 1.19430 0.92350 0.92057 0.86523 0.98237 1.21169 1.34426 1.08212 0.89996 0.91907 1.24942 0.95259 0.95174 0.98980 1.69925 1.37974 1.22183 1.23411 0.86540 0.79646 0.78944 0.82670 1.20840 1.21379 1.19732 1.64902 1.10118 1.46516 1.02493 1.23133 0.98547 0.95706 0.92092 1.22516 0.95202 1.00555 0.97096 1.22103 0.96077 0.95904 0.97318 0.92050 1.21489 0.92652 0.98559 0.88669 0.89860 1.22668 1.01723 1.00948 0.99183 1.58799 1.11310 1.06948 1.59698 1.22514 0.88600 1.02157 0.92575 0.97602 0.90157 0.94818 0.93130 0.95054 0.91284 0.91295 0.92403 0.91973 0.93269 0.93089 0.85193 0.85227 0.94320 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.99 37.16 0.33 -2.90 16 2 C 0.20 5.36 1.72 -68.86 -0.12 5.24 16 3 H 0.00 0.00 7.96 -51.93 -0.41 -0.41 16 4 C -0.50 -14.22 7.79 -34.44 -0.27 -14.49 16 5 H 0.06 1.81 7.16 -52.48 -0.38 1.43 16 6 C 0.06 1.63 5.35 -17.82 -0.10 1.54 16 7 N -0.90 -26.33 11.52 55.43 0.64 -25.69 16 8 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.52 -11.63 5.10 -223.89 -1.14 -12.77 16 13 C 0.03 0.64 5.73 -1.90 -0.01 0.63 16 14 C -0.12 -1.75 5.61 -24.87 -0.14 -1.89 16 15 C -0.09 -1.49 2.73 -89.27 -0.24 -1.73 16 16 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 17 C 0.10 1.30 2.60 -67.72 -0.18 1.12 16 18 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.19 -1.97 9.29 37.16 0.35 -1.62 16 20 N -0.84 -10.62 8.66 -4.67 -0.04 -10.66 16 21 C 0.07 1.44 5.01 -2.76 -0.01 1.43 16 22 H 0.00 0.12 7.40 -51.93 -0.38 -0.27 16 23 H 0.08 2.22 6.24 -51.93 -0.32 1.90 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 26 H 0.03 0.62 7.89 -51.93 -0.41 0.21 16 27 H 0.07 1.26 7.85 -51.93 -0.41 0.86 16 28 H 0.07 1.00 7.74 -51.93 -0.40 0.60 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.65 7.26 -51.93 -0.38 0.27 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.34 3.85 9.00 -39.30 -0.35 3.49 16 34 H 0.34 3.53 9.07 -39.29 -0.36 3.17 16 35 H 0.04 0.89 7.66 -51.93 -0.40 0.49 16 36 H 0.08 1.79 7.11 -51.93 -0.37 1.42 16 LS Contribution 280.43 15.07 4.23 4.23 Total: -1.00 -29.71 280.43 -7.97 -37.67 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.24 Total: 2.91 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -0.39 Total: -12.67 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.54 Total: -49.13 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.71 -7.97 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252786922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.532 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds