Wall clock time and date at job start Mon Mar 30 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46746 * 2 1 4 4 C 1.50701 * 109.46948 * 240.00449 * 2 1 3 5 5 H 1.08004 * 119.99246 * 245.49178 * 4 2 1 6 6 C 1.37875 * 120.00564 * 65.48890 * 4 2 1 7 7 N 1.31513 * 119.99830 * 355.15295 * 6 4 2 8 8 Si 1.86797 * 119.99885 * 175.15119 * 6 4 2 9 9 H 1.48499 * 109.47312 * 95.00227 * 8 6 4 10 10 H 1.48502 * 109.46882 * 215.00018 * 8 6 4 11 11 H 1.48497 * 109.47366 * 334.99745 * 8 6 4 12 12 N 1.46897 * 109.46917 * 120.00178 * 2 1 3 13 13 C 1.48528 * 110.99837 * 292.55918 * 12 2 1 14 14 C 1.54938 * 103.22779 * 200.27885 * 13 12 2 15 15 C 1.54595 * 102.91832 * 37.41791 * 14 13 12 16 16 H 1.09002 * 110.30939 * 96.95910 * 15 14 13 17 17 C 1.52995 * 110.39367 * 219.08037 * 15 14 13 18 18 H 1.09005 * 109.47032 * 57.15283 * 17 15 14 19 19 C 1.53000 * 109.47493 * 297.15584 * 17 15 14 20 20 N 1.46899 * 109.47384 * 177.15719 * 17 15 14 21 21 C 1.47899 * 110.99624 * 175.16736 * 12 2 1 22 22 H 1.08994 * 109.47331 * 304.98079 * 1 2 3 23 23 H 1.09000 * 109.47217 * 64.98653 * 1 2 3 24 24 H 1.09004 * 109.46858 * 184.97932 * 1 2 3 25 25 H 0.96997 * 120.00098 * 179.97438 * 7 6 4 26 26 H 1.08996 * 110.67036 * 318.71834 * 13 12 2 27 27 H 1.09006 * 110.66500 * 81.84823 * 13 12 2 28 28 H 1.08999 * 110.72679 * 279.06106 * 14 13 12 29 29 H 1.09003 * 110.72389 * 155.77094 * 14 13 12 30 30 H 1.09000 * 109.47051 * 59.99477 * 19 17 15 31 31 H 1.08996 * 109.47988 * 179.97438 * 19 17 15 32 32 H 1.09005 * 109.46758 * 300.00437 * 19 17 15 33 33 H 1.00893 * 111.00235 * 60.00005 * 20 17 15 34 34 H 1.00898 * 110.99990 * 183.95939 * 20 17 15 35 35 H 1.08998 * 109.92152 * 26.48900 * 21 12 2 36 36 H 1.08996 * 109.91861 * 265.19448 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5781 -1.6373 -1.1339 6 6 1.7951 -0.1770 -2.4796 7 7 1.0499 0.8994 -2.6043 8 14 2.5323 -0.9833 -3.9948 9 1 1.5405 -1.9126 -4.5931 10 1 2.8921 0.0621 -4.9863 11 1 3.7504 -1.7403 -3.6096 12 7 2.0197 -0.6925 1.1994 13 6 1.6955 0.0769 2.4278 14 6 2.6969 -0.4811 3.4702 15 6 3.9783 -0.7028 2.6342 16 1 4.6536 0.1456 2.7447 17 6 4.6766 -1.9953 3.0615 18 1 3.9864 -2.8326 2.9577 19 6 5.1193 -1.8773 4.5213 20 7 5.8522 -2.2213 2.2101 21 6 3.4935 -0.8138 1.1768 22 1 -0.3633 0.5891 0.8419 23 1 -0.3634 0.4345 -0.9313 24 1 -0.3633 -1.0238 0.0892 25 1 0.8833 1.2749 -3.4830 26 1 1.8596 1.1426 2.2688 27 1 0.6687 -0.1129 2.7409 28 1 2.3382 -1.4237 3.8837 29 1 2.8743 0.2463 4.2624 30 1 4.2470 -1.7096 5.1531 31 1 5.6164 -2.7983 4.8259 32 1 5.8094 -1.0400 4.6251 33 1 6.5076 -1.4583 2.2887 34 1 6.2938 -3.1015 2.4297 35 1 3.9232 -0.0091 0.5802 36 1 3.7802 -1.7804 0.7627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252786922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:39 Heat of formation + Delta-G solvation = -29.101648 kcal Electronic energy + Delta-G solvation = -14886.456061 eV Core-core repulsion = 12596.881194 eV Total energy + Delta-G solvation = -2289.574868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21106 -37.16515 -35.11715 -32.75221 -30.17537 -29.61918 -28.44466 -27.07162 -23.33451 -22.91465 -21.21093 -20.74687 -18.24211 -17.29951 -16.72259 -16.34097 -15.83560 -15.38382 -14.99606 -14.39492 -14.20219 -13.86937 -13.47462 -13.43697 -13.18467 -12.88264 -12.68737 -12.53147 -12.27853 -12.20304 -12.04810 -11.80541 -11.65643 -11.46770 -11.23271 -10.92771 -10.50322 -9.46275 -8.98308 -8.13253 -6.24047 1.40164 1.40342 1.52883 2.42067 3.15556 3.48817 3.63285 3.81936 3.92036 4.18772 4.42461 4.47132 4.49636 4.64630 4.78131 4.79395 4.93310 4.94185 5.02194 5.08660 5.10569 5.14578 5.20352 5.29679 5.40691 5.46991 5.52884 5.72649 5.79196 6.22705 6.38293 6.40214 6.70048 6.74050 6.91815 7.45297 8.93786 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.009042 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.760388 B = 3095.925551 C = 3758.389218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.208 3.792 3 H -0.038 1.038 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.526 5.526 13 C 0.027 3.973 14 C -0.101 4.101 15 C -0.086 4.086 16 H 0.069 0.931 17 C 0.104 3.896 18 H 0.069 0.931 19 C -0.176 4.176 20 N -0.856 5.856 21 C 0.075 3.925 22 H 0.026 0.974 23 H 0.054 0.946 24 H 0.033 0.967 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.343 0.657 34 H 0.349 0.651 35 H 0.003 0.997 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -3.895 13.186 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 H -0.021 1.021 4 C -0.556 4.556 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.250 5.250 13 C -0.101 4.101 14 C -0.139 4.139 15 C -0.106 4.106 16 H 0.088 0.912 17 C -0.008 4.008 18 H 0.087 0.913 19 C -0.235 4.235 20 N -0.386 5.386 21 C -0.053 4.053 22 H 0.045 0.955 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.022 0.978 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.370 -4.279 12.422 14.601 hybrid contribution 1.002 0.827 -0.441 1.372 sum 7.372 -3.452 11.981 14.485 Atomic orbital electron populations 1.21558 0.97303 0.98780 0.99682 1.19222 0.92788 0.90053 0.87885 1.02089 1.21381 1.34709 1.08104 0.91380 0.92965 1.25735 0.95502 0.95763 1.01887 1.70041 1.38682 1.23237 1.24214 0.85529 0.78916 0.78180 0.78972 1.19966 1.20627 1.19472 1.64802 1.11261 1.46539 1.02416 1.23266 1.00320 0.94924 0.91595 1.22488 0.93142 1.01826 0.96455 1.22050 0.96853 0.97919 0.93776 0.91249 1.21329 0.92479 0.96290 0.90681 0.91262 1.22541 1.02216 1.02093 0.96636 1.58735 1.11621 1.08055 1.60203 1.22408 0.87575 0.99626 0.95732 0.95462 0.92680 0.94767 0.92907 0.96137 0.90493 0.89940 0.89224 0.91334 0.91819 0.92333 0.84403 0.83772 0.97825 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.95 8.99 71.98 0.65 -5.30 16 2 C 0.21 11.32 1.72 44.17 0.08 11.40 16 3 H -0.04 -2.33 7.96 -2.39 -0.02 -2.35 16 4 C -0.52 -30.29 7.79 25.60 0.20 -30.09 16 5 H 0.05 3.10 7.16 -2.91 -0.02 3.08 16 6 C 0.01 0.55 5.35 84.65 0.45 1.00 16 7 N -0.92 -55.33 11.52 21.45 0.25 -55.09 16 8 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.53 -24.00 5.10 -862.26 -4.40 -28.40 16 13 C 0.03 1.00 5.73 86.65 0.50 1.50 16 14 C -0.10 -2.78 5.61 31.80 0.18 -2.60 16 15 C -0.09 -2.60 2.73 -9.92 -0.03 -2.62 16 16 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 17 C 0.10 2.53 2.60 44.91 0.12 2.65 16 18 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 19 C -0.18 -3.07 9.29 71.98 0.67 -2.40 16 20 N -0.86 -20.36 8.66 -168.68 -1.46 -21.82 16 21 C 0.07 3.16 5.01 86.45 0.43 3.59 16 22 H 0.03 1.23 7.40 -2.39 -0.02 1.22 16 23 H 0.05 3.12 6.24 -2.39 -0.01 3.10 16 24 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 26 H 0.02 0.80 7.89 -2.39 -0.02 0.78 16 27 H 0.08 2.70 7.85 -2.38 -0.02 2.68 16 28 H 0.08 2.10 7.74 -2.39 -0.02 2.08 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.13 7.26 -2.39 -0.02 1.12 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.34 7.28 9.00 -89.70 -0.81 6.47 16 34 H 0.35 6.68 9.07 -89.70 -0.81 5.87 16 35 H 0.00 0.16 7.66 -2.39 -0.02 0.14 16 36 H 0.06 2.84 7.11 -2.39 -0.02 2.82 16 Total: -1.00 -65.30 280.43 -0.91 -66.21 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -0.57 Total: 14.26 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 3.24 Total: -22.88 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -5.61 Total: -105.31 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -65.30 -0.91 -66.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252786922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.106 kcal (2) G-P(sol) polarization free energy of solvation -65.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds