Wall clock time and date at job start Mon Mar 30 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47043 * 2 1 4 4 C 1.50696 * 109.46870 * 239.99073 * 2 1 3 5 5 H 1.07994 * 120.00245 * 239.99558 * 4 2 1 6 6 C 1.37878 * 119.99789 * 60.00601 * 4 2 1 7 7 N 1.31512 * 119.99893 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00065 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46739 * 59.99956 * 8 6 4 10 10 H 1.48504 * 109.47045 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47091 * 299.99885 * 8 6 4 12 12 N 1.46906 * 109.46597 * 119.99558 * 2 1 3 13 13 C 1.48542 * 110.99573 * 177.60273 * 12 2 1 14 14 C 1.54928 * 103.22598 * 159.72041 * 13 12 2 15 15 C 1.54602 * 102.92450 * 322.58646 * 14 13 12 16 16 H 1.08997 * 110.30641 * 263.04513 * 15 14 13 17 17 C 1.52995 * 110.39106 * 140.91700 * 15 14 13 18 18 H 1.08997 * 109.47202 * 299.41718 * 17 15 14 19 19 C 1.53002 * 109.46796 * 179.42317 * 17 15 14 20 20 N 1.46896 * 109.47448 * 59.42554 * 17 15 14 21 21 C 1.47893 * 111.00125 * 294.99581 * 12 2 1 22 22 H 1.08995 * 109.46896 * 60.00612 * 1 2 3 23 23 H 1.08997 * 109.47038 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47009 * 300.00443 * 1 2 3 25 25 H 0.97011 * 120.00192 * 180.02562 * 7 6 4 26 26 H 1.09002 * 110.66484 * 278.15739 * 13 12 2 27 27 H 1.08997 * 110.66250 * 41.28224 * 13 12 2 28 28 H 1.08998 * 110.72543 * 204.22919 * 14 13 12 29 29 H 1.08998 * 110.88120 * 81.01305 * 14 13 12 30 30 H 1.09003 * 109.47336 * 60.00296 * 19 17 15 31 31 H 1.09002 * 109.47260 * 180.02562 * 19 17 15 32 32 H 1.08996 * 109.47239 * 299.99888 * 19 17 15 33 33 H 1.00899 * 111.00277 * 61.28381 * 20 17 15 34 34 H 1.00900 * 111.00376 * 185.23608 * 20 17 15 35 35 H 1.08996 * 109.92208 * 333.51254 * 21 12 2 36 36 H 1.08998 * 109.91562 * 94.61011 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9429 0.8294 -2.6034 8 14 2.3224 -1.1200 -4.0078 9 1 1.8278 -2.5202 -4.0078 10 1 1.8268 -0.4204 -5.2204 11 1 3.8074 -1.1195 -4.0076 12 7 2.0196 -0.6925 1.1996 13 6 3.5034 -0.7627 1.2053 14 6 3.8407 -1.0121 2.6967 15 6 2.7914 -0.1513 3.4371 16 1 3.2198 0.8118 3.7145 17 6 2.2830 -0.8834 4.6807 18 1 1.8144 -1.8216 4.3838 19 6 1.2578 -0.0079 5.4043 20 7 3.4105 -1.1621 5.5801 21 6 1.6462 0.0443 2.4264 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7082 1.1606 -3.4845 26 1 3.8516 -1.5911 0.5883 27 1 3.9343 0.1790 0.8655 28 1 4.8503 -0.6713 2.9260 29 1 3.7238 -2.0656 2.9506 30 1 0.4211 0.1989 4.7370 31 1 0.8959 -0.5292 6.2905 32 1 1.7263 0.9303 5.7012 33 1 3.8489 -0.3065 5.8863 34 1 3.1155 -1.7193 6.3679 35 1 1.5267 1.1040 2.2013 36 1 0.7169 -0.3562 2.8316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252786923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:42 Heat of formation + Delta-G solvation = -28.277959 kcal Electronic energy + Delta-G solvation = -14835.903452 eV Core-core repulsion = 12546.364302 eV Total energy + Delta-G solvation = -2289.539150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.24981 -37.17082 -35.11765 -32.72668 -30.56913 -29.17421 -28.57127 -27.00682 -23.87340 -22.31970 -21.56039 -20.47474 -18.44472 -17.38124 -16.68371 -16.44374 -15.85731 -14.98598 -14.82655 -14.57513 -14.38917 -14.03404 -13.55218 -13.34046 -13.13069 -12.96385 -12.76842 -12.56679 -12.26836 -12.19533 -12.00708 -11.81843 -11.60211 -11.45542 -11.28308 -10.89322 -10.53817 -9.50613 -9.01877 -8.12669 -6.24976 1.41180 1.43522 1.51161 2.41706 3.15192 3.47972 3.55652 3.80307 3.95289 4.18777 4.39915 4.46257 4.52541 4.55629 4.76611 4.77834 4.89432 4.90455 4.99563 5.06236 5.09837 5.12936 5.22925 5.29978 5.32620 5.45445 5.52429 5.70930 5.77021 6.22045 6.34512 6.36829 6.67941 6.73639 6.89442 7.44495 8.93466 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055296 B = 0.007463 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.244136 B = 3750.958395 C = 4105.245508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.208 3.792 3 H -0.039 1.039 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.522 5.522 13 C 0.046 3.954 14 C -0.088 4.088 15 C -0.081 4.081 16 H 0.072 0.928 17 C 0.106 3.894 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.844 5.844 21 C 0.043 3.957 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.026 0.974 25 H 0.262 0.738 26 H 0.062 0.938 27 H 0.016 0.984 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.344 0.656 34 H 0.349 0.651 35 H 0.018 0.982 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -1.822 14.424 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 H -0.021 1.021 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.247 5.247 13 C -0.083 4.083 14 C -0.127 4.127 15 C -0.101 4.101 16 H 0.090 0.910 17 C -0.006 4.006 18 H 0.089 0.911 19 C -0.242 4.242 20 N -0.374 5.374 21 C -0.086 4.086 22 H 0.078 0.922 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.036 0.964 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.099 -2.608 13.651 14.240 hybrid contribution -0.225 1.324 -0.554 1.453 sum 2.874 -1.284 13.097 13.470 Atomic orbital electron populations 1.21587 0.97315 0.99127 0.99550 1.19222 0.92804 0.90014 0.87858 1.02141 1.21385 1.31208 1.12326 0.91107 0.92608 1.25750 0.95328 0.95773 1.01998 1.70017 1.37737 1.24218 1.24153 0.85557 0.78717 0.78701 0.78338 1.19632 1.20740 1.19665 1.64780 1.09682 1.48156 1.02062 1.23016 0.88761 0.98843 0.97631 1.22290 0.98349 1.00480 0.91532 1.21946 0.94846 0.98820 0.94456 0.90953 1.21264 0.90124 0.97512 0.91705 0.91083 1.22614 1.00122 1.00589 1.00885 1.58774 1.30491 1.24762 1.23362 1.22886 0.99081 0.95342 0.91287 0.92159 0.95066 0.95530 0.92878 0.91977 0.96544 0.90467 0.90873 0.92763 0.91419 0.92197 0.84264 0.83712 0.96355 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.95 71.98 0.64 -5.40 16 2 C 0.21 11.18 1.77 44.17 0.08 11.26 16 3 H -0.04 -2.32 7.96 -2.39 -0.02 -2.34 16 4 C -0.52 -29.94 8.06 25.60 0.21 -29.73 16 5 H 0.06 3.19 6.81 -2.91 -0.02 3.17 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -54.48 11.32 21.45 0.24 -54.24 16 8 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.52 -23.58 5.10 -862.24 -4.40 -27.97 16 13 C 0.05 1.88 5.69 86.64 0.49 2.37 16 14 C -0.09 -2.77 6.24 31.80 0.20 -2.58 16 15 C -0.08 -2.35 2.73 -9.91 -0.03 -2.37 16 16 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 17 C 0.11 2.42 2.62 44.91 0.12 2.54 16 18 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.18 -3.56 9.28 71.98 0.67 -2.90 16 20 N -0.84 -15.56 8.84 -168.69 -1.49 -17.05 16 21 C 0.04 1.58 4.72 86.45 0.41 1.99 16 22 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 23 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.03 1.19 7.35 -2.38 -0.02 1.18 16 25 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 26 H 0.06 2.67 7.32 -2.39 -0.02 2.65 16 27 H 0.02 0.72 8.02 -2.39 -0.02 0.70 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.30 7.87 -2.39 -0.02 2.28 16 30 H 0.05 1.20 6.77 -2.39 -0.02 1.18 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.34 5.47 8.99 -89.69 -0.81 4.67 16 34 H 0.35 5.09 9.07 -89.69 -0.81 4.28 16 35 H 0.02 0.72 7.65 -2.39 -0.02 0.70 16 36 H 0.07 2.61 6.63 -2.39 -0.02 2.60 16 Total: -1.00 -62.64 279.17 -0.95 -63.58 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -0.56 Total: 12.71 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 3.24 Total: -23.81 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -5.65 Total: -99.26 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -62.64 -0.95 -63.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252786923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.307 kcal (2) G-P(sol) polarization free energy of solvation -62.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds