Wall clock time and date at job start Mon Mar 30 2020 02:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 C 1.50698 * 109.47385 * 239.99865 * 2 1 3 5 5 H 1.07997 * 120.00729 * 245.45732 * 4 2 1 6 6 C 1.37885 * 119.99782 * 65.45637 * 4 2 1 7 7 N 1.31516 * 119.99892 * 9.56648 * 6 4 2 8 8 Si 1.86798 * 120.00120 * 189.56209 * 6 4 2 9 9 H 1.48499 * 109.47086 * 84.99511 * 8 6 4 10 10 H 1.48497 * 109.47159 * 204.99541 * 8 6 4 11 11 H 1.48506 * 109.47094 * 324.99591 * 8 6 4 12 12 N 1.46897 * 109.47149 * 119.99991 * 2 1 3 13 13 C 1.46891 * 111.00226 * 275.00177 * 12 2 1 14 14 H 1.09002 * 110.76801 * 328.19670 * 13 12 2 15 15 C 1.55143 * 110.70868 * 204.99741 * 13 12 2 16 16 C 1.54907 * 101.65410 * 205.96119 * 15 13 12 17 17 H 1.09001 * 110.37832 * 278.24230 * 16 15 13 18 18 C 1.52999 * 110.37115 * 155.90048 * 16 15 13 19 19 N 1.47846 * 104.79561 * 37.07211 * 16 15 13 20 20 C 1.46893 * 110.99963 * 213.63301 * 19 16 15 21 21 C 1.47449 * 108.56590 * 335.90337 * 19 16 15 22 22 H 1.08997 * 109.47018 * 304.25088 * 1 2 3 23 23 H 1.09000 * 109.47114 * 64.25556 * 1 2 3 24 24 H 1.09003 * 109.46991 * 184.24952 * 1 2 3 25 25 H 0.96992 * 119.99755 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00341 * 38.95687 * 12 2 1 27 27 H 1.08997 * 110.99425 * 324.05553 * 15 13 12 28 28 H 1.09004 * 110.98999 * 87.83706 * 15 13 12 29 29 H 1.08999 * 109.47680 * 59.99961 * 18 16 15 30 30 H 1.08999 * 109.47379 * 180.02562 * 18 16 15 31 31 H 1.09007 * 109.47433 * 299.99727 * 18 16 15 32 32 H 1.08999 * 109.47375 * 60.00223 * 20 19 16 33 33 H 1.09004 * 109.47608 * 179.97438 * 20 19 16 34 34 H 1.09000 * 109.47384 * 300.00119 * 20 19 16 35 35 H 1.09000 * 109.88173 * 241.58399 * 21 19 16 36 36 H 1.08995 * 109.88488 * 120.39831 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1339 6 6 1.7946 -0.1774 -2.4796 7 7 1.2993 1.0356 -2.5935 8 14 2.1759 -1.1781 -4.0102 9 1 1.0239 -2.0610 -4.3240 10 1 2.4226 -0.2614 -5.1521 11 1 3.3844 -2.0073 -3.7710 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2225 2.3468 14 1 2.3083 1.2375 2.0199 15 6 3.1299 -0.2663 3.3816 16 6 2.5856 0.3517 4.6937 17 1 2.8909 1.3947 4.7772 18 6 3.0772 -0.4469 5.9026 19 7 1.1151 0.2537 4.5755 20 6 0.4575 1.3938 5.2278 21 6 0.7624 0.1876 3.1454 22 1 -0.3633 0.5784 0.8494 23 1 -0.3633 0.4464 -0.9257 24 1 -0.3633 -1.0249 0.0762 25 1 1.1317 1.4104 -3.4723 26 1 1.4496 -1.4980 1.4100 27 1 3.1437 -1.3547 3.4390 28 1 4.1208 0.1229 3.1478 29 1 4.1668 -0.4329 5.9287 30 1 2.6858 -0.0003 6.8166 31 1 2.7289 -1.4768 5.8239 32 1 0.7850 2.3205 4.7565 33 1 -0.6234 1.2971 5.1256 34 1 0.7228 1.4103 6.2849 35 1 0.1434 1.0435 2.8763 36 1 0.2278 -0.7393 2.9379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252806349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:18 Heat of formation + Delta-G solvation = -1.056275 kcal Electronic energy + Delta-G solvation = -14704.433030 eV Core-core repulsion = 12416.074301 eV Total energy + Delta-G solvation = -2288.358729 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.12665 -35.58117 -32.61830 -31.68304 -30.09014 -27.13400 -25.84673 -25.07110 -24.02539 -20.41348 -20.34922 -19.72779 -16.44914 -15.90046 -15.01111 -14.69406 -14.17549 -13.79082 -13.58621 -13.19541 -12.69036 -12.35722 -12.21853 -11.95157 -11.75453 -11.41508 -11.27177 -11.08427 -10.87322 -10.78881 -10.63938 -10.48756 -10.32887 -10.17232 -9.73509 -8.97464 -8.32314 -8.20230 -7.24403 -5.99800 -3.99083 3.34288 3.40265 3.44161 4.12398 4.45781 4.85635 5.03169 5.25856 5.32753 5.36680 5.45919 5.54788 5.58398 5.67923 5.75146 5.87707 5.93364 6.01503 6.08842 6.22351 6.36673 6.47713 6.58897 6.64361 6.80748 7.03474 7.15109 7.25321 7.34085 7.61486 7.90226 8.23008 8.55362 8.62977 9.07501 9.64551 11.09585 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057793 B = 0.006781 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.372153 B = 4128.162865 C = 4408.518311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.209 3.791 3 H 0.039 0.961 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.670 5.670 13 C 0.072 3.928 14 H 0.075 0.925 15 C -0.112 4.112 16 C 0.062 3.938 17 H 0.050 0.950 18 C -0.131 4.131 19 N -0.531 5.531 20 C 0.022 3.978 21 C 0.017 3.983 22 H 0.012 0.988 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.260 0.740 26 H 0.328 0.672 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -0.149 13.282 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.101 3.899 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.299 5.299 13 C -0.040 4.040 14 H 0.093 0.907 15 C -0.151 4.151 16 C -0.046 4.046 17 H 0.068 0.932 18 C -0.189 4.189 19 N -0.256 5.256 20 C -0.127 4.127 21 C -0.112 4.112 22 H 0.031 0.969 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.621 -0.379 13.204 13.224 hybrid contribution -0.732 0.521 -1.100 1.420 sum -0.111 0.142 12.103 12.105 Atomic orbital electron populations 1.22450 1.01040 0.98473 1.00292 1.19267 0.89187 0.94802 0.86623 0.94322 1.21116 1.34540 1.08245 0.89735 0.91961 1.24948 0.95626 0.94743 0.99027 1.69966 1.45831 1.14082 1.23675 0.86583 0.78694 0.80026 0.82528 1.20727 1.21488 1.19910 1.60787 1.57782 1.08389 1.02942 1.22807 0.92470 0.97353 0.91410 0.90659 1.22760 0.98631 1.01406 0.92311 1.22614 0.87520 0.98171 0.96291 0.93196 1.21664 0.99856 1.00715 0.96635 1.63480 1.07209 1.41114 1.13812 1.22499 0.99496 0.91602 0.99111 1.23763 0.99070 1.01524 0.86862 0.96940 0.91184 0.95176 0.93074 0.85383 0.90445 0.91056 0.92561 0.93327 0.91985 0.95729 0.91738 0.91860 0.93080 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 8.83 37.16 0.33 -3.49 16 2 C 0.21 5.22 2.44 -68.87 -0.17 5.05 16 3 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 4 C -0.50 -13.83 8.76 -34.44 -0.30 -14.13 16 5 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 6 C 0.06 1.61 5.16 -17.82 -0.09 1.52 16 7 N -0.90 -25.97 12.16 55.43 0.67 -25.30 16 8 Si 0.89 21.59 29.55 -169.99 -5.02 16.57 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.67 -14.16 6.13 -99.06 -0.61 -14.77 16 13 C 0.07 1.30 3.24 -65.89 -0.21 1.09 16 14 H 0.08 1.47 7.45 -51.93 -0.39 1.09 16 15 C -0.11 -1.73 6.18 -24.59 -0.15 -1.88 16 16 C 0.06 0.85 3.05 -66.19 -0.20 0.64 16 17 H 0.05 0.67 7.77 -51.93 -0.40 0.26 16 18 C -0.13 -1.49 9.59 37.16 0.36 -1.14 16 19 N -0.53 -7.71 5.10 -231.60 -1.18 -8.89 16 20 C 0.02 0.27 9.12 60.06 0.55 0.82 16 21 C 0.02 0.28 5.37 -2.83 -0.02 0.27 16 22 H 0.01 0.25 6.49 -51.93 -0.34 -0.09 16 23 H 0.07 1.82 6.82 -51.93 -0.35 1.47 16 24 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.33 6.62 7.74 -39.29 -0.30 6.32 16 27 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.02 0.30 8.09 -51.93 -0.42 -0.12 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.85 6.97 -51.93 -0.36 0.49 16 36 H 0.08 1.28 7.49 -51.93 -0.39 0.89 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -28.34 283.32 -8.04 -36.38 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.26 Total: 3.01 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.11 Total: -48.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.34 -8.04 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252806349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.323 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds