Wall clock time and date at job start Mon Mar 30 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 C 1.50698 * 109.47385 * 239.99865 * 2 1 3 5 5 H 1.07997 * 120.00729 * 245.45732 * 4 2 1 6 6 C 1.37885 * 119.99782 * 65.45637 * 4 2 1 7 7 N 1.31516 * 119.99892 * 9.56648 * 6 4 2 8 8 Si 1.86798 * 120.00120 * 189.56209 * 6 4 2 9 9 H 1.48499 * 109.47086 * 84.99511 * 8 6 4 10 10 H 1.48497 * 109.47159 * 204.99541 * 8 6 4 11 11 H 1.48506 * 109.47094 * 324.99591 * 8 6 4 12 12 N 1.46897 * 109.47149 * 119.99991 * 2 1 3 13 13 C 1.46891 * 111.00226 * 275.00177 * 12 2 1 14 14 H 1.09002 * 110.76801 * 328.19670 * 13 12 2 15 15 C 1.55143 * 110.70868 * 204.99741 * 13 12 2 16 16 C 1.54907 * 101.65410 * 205.96119 * 15 13 12 17 17 H 1.09001 * 110.37832 * 278.24230 * 16 15 13 18 18 C 1.52999 * 110.37115 * 155.90048 * 16 15 13 19 19 N 1.47846 * 104.79561 * 37.07211 * 16 15 13 20 20 C 1.46893 * 110.99963 * 213.63301 * 19 16 15 21 21 C 1.47449 * 108.56590 * 335.90337 * 19 16 15 22 22 H 1.08997 * 109.47018 * 304.25088 * 1 2 3 23 23 H 1.09000 * 109.47114 * 64.25556 * 1 2 3 24 24 H 1.09003 * 109.46991 * 184.24952 * 1 2 3 25 25 H 0.96992 * 119.99755 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00341 * 38.95687 * 12 2 1 27 27 H 1.08997 * 110.99425 * 324.05553 * 15 13 12 28 28 H 1.09004 * 110.98999 * 87.83706 * 15 13 12 29 29 H 1.08999 * 109.47680 * 59.99961 * 18 16 15 30 30 H 1.08999 * 109.47379 * 180.02562 * 18 16 15 31 31 H 1.09007 * 109.47433 * 299.99727 * 18 16 15 32 32 H 1.08999 * 109.47375 * 60.00223 * 20 19 16 33 33 H 1.09004 * 109.47608 * 179.97438 * 20 19 16 34 34 H 1.09000 * 109.47384 * 300.00119 * 20 19 16 35 35 H 1.09000 * 109.88173 * 241.58399 * 21 19 16 36 36 H 1.08995 * 109.88488 * 120.39831 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1339 6 6 1.7946 -0.1774 -2.4796 7 7 1.2993 1.0356 -2.5935 8 14 2.1759 -1.1781 -4.0102 9 1 1.0239 -2.0610 -4.3240 10 1 2.4226 -0.2614 -5.1521 11 1 3.3844 -2.0073 -3.7710 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2225 2.3468 14 1 2.3083 1.2375 2.0199 15 6 3.1299 -0.2663 3.3816 16 6 2.5856 0.3517 4.6937 17 1 2.8909 1.3947 4.7772 18 6 3.0772 -0.4469 5.9026 19 7 1.1151 0.2537 4.5755 20 6 0.4575 1.3938 5.2278 21 6 0.7624 0.1876 3.1454 22 1 -0.3633 0.5784 0.8494 23 1 -0.3633 0.4464 -0.9257 24 1 -0.3633 -1.0249 0.0762 25 1 1.1317 1.4104 -3.4723 26 1 1.4496 -1.4980 1.4100 27 1 3.1437 -1.3547 3.4390 28 1 4.1208 0.1229 3.1478 29 1 4.1668 -0.4329 5.9287 30 1 2.6858 -0.0003 6.8166 31 1 2.7289 -1.4768 5.8239 32 1 0.7850 2.3205 4.7565 33 1 -0.6234 1.2971 5.1256 34 1 0.7228 1.4103 6.2849 35 1 0.1434 1.0435 2.8763 36 1 0.2278 -0.7393 2.9379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252806349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:17 Heat of formation + Delta-G solvation = -20.847010 kcal Electronic energy + Delta-G solvation = -14705.291221 eV Core-core repulsion = 12416.074301 eV Total energy + Delta-G solvation = -2289.216920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41258 -37.31010 -34.52143 -32.83436 -31.69500 -28.74035 -27.30159 -26.83421 -25.24985 -22.30606 -21.80429 -20.90847 -18.40467 -17.31163 -16.63229 -16.36173 -15.50504 -15.30793 -14.87793 -14.48279 -14.41374 -13.85383 -13.54389 -13.37157 -13.13932 -12.98006 -12.82229 -12.69359 -12.39785 -12.36401 -12.16423 -12.10645 -11.85902 -11.71493 -11.50045 -10.94714 -10.46415 -9.40856 -8.92390 -8.13030 -6.20284 1.43155 1.43724 1.53954 2.44091 2.98477 3.17088 3.50536 3.82960 3.90578 4.10003 4.25506 4.43060 4.49068 4.50424 4.57637 4.70948 4.73565 4.84661 4.92280 4.96932 4.99140 5.03306 5.09026 5.19332 5.24362 5.40552 5.46367 5.63578 5.75515 5.97478 6.15720 6.22471 6.66267 6.83457 6.94249 7.48221 8.95179 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057793 B = 0.006781 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.372153 B = 4128.162865 C = 4408.518311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.216 3.784 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.925 5.925 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.673 5.673 13 C 0.067 3.933 14 H 0.053 0.947 15 C -0.106 4.106 16 C 0.065 3.935 17 H 0.055 0.945 18 C -0.125 4.125 19 N -0.535 5.535 20 C 0.020 3.980 21 C 0.028 3.972 22 H 0.031 0.969 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.261 0.739 26 H 0.335 0.665 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -0.889 14.463 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.107 3.893 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.194 1.194 12 N -0.303 5.303 13 C -0.045 4.045 14 H 0.072 0.928 15 C -0.145 4.145 16 C -0.043 4.043 17 H 0.073 0.927 18 C -0.182 4.182 19 N -0.260 5.260 20 C -0.129 4.129 21 C -0.102 4.102 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.153 0.847 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.771 -1.124 14.414 14.478 hybrid contribution -0.758 0.788 -1.409 1.784 sum 0.013 -0.336 13.004 13.009 Atomic orbital electron populations 1.22245 0.99898 0.99101 0.99545 1.18995 0.89923 0.92746 0.87621 0.98036 1.21438 1.34762 1.08187 0.91216 0.92646 1.25726 0.95501 0.95615 1.01991 1.70083 1.46667 1.15409 1.24348 0.85567 0.78721 0.78570 0.78755 1.19882 1.21156 1.19446 1.60676 1.57689 1.08920 1.02995 1.22823 0.94806 0.95735 0.91095 0.92834 1.22713 0.97914 1.01427 0.92408 1.22673 0.86834 0.98684 0.96122 0.92741 1.21621 1.00779 0.99962 0.95863 1.63550 1.07936 1.42332 1.12171 1.22582 0.99676 0.90585 1.00010 1.23537 0.97654 1.00956 0.88080 0.94993 0.94081 0.94134 0.93017 0.84677 0.90458 0.90897 0.91143 0.92020 0.92500 0.96008 0.91251 0.89777 0.93781 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.00 8.83 71.98 0.64 -6.37 16 2 C 0.22 11.00 2.44 44.17 0.11 11.10 16 3 H 0.00 0.10 7.38 -2.39 -0.02 0.08 16 4 C -0.52 -29.09 8.76 25.60 0.22 -28.87 16 5 H 0.06 3.12 7.83 -2.91 -0.02 3.10 16 6 C 0.01 0.56 5.16 84.66 0.44 1.00 16 7 N -0.93 -54.47 12.16 21.45 0.26 -54.21 16 8 Si 0.96 44.36 29.55 68.60 2.03 46.38 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 N -0.67 -28.62 6.13 -467.30 -2.87 -31.48 16 13 C 0.07 2.43 3.24 46.10 0.15 2.58 16 14 H 0.05 2.15 7.45 -2.39 -0.02 2.14 16 15 C -0.11 -3.14 6.18 31.98 0.20 -2.95 16 16 C 0.07 1.63 3.05 45.38 0.14 1.76 16 17 H 0.05 1.33 7.77 -2.39 -0.02 1.31 16 18 C -0.12 -2.48 9.59 71.98 0.69 -1.79 16 19 N -0.54 -14.48 5.10 -886.65 -4.52 -19.00 16 20 C 0.02 0.44 9.12 127.69 1.17 1.61 16 21 C 0.03 0.88 5.37 86.64 0.47 1.34 16 22 H 0.03 1.33 6.49 -2.39 -0.02 1.32 16 23 H 0.04 2.16 6.82 -2.39 -0.02 2.14 16 24 H 0.04 1.78 8.06 -2.39 -0.02 1.76 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.33 13.37 7.74 -89.69 -0.69 12.68 16 27 H 0.08 2.30 8.06 -2.39 -0.02 2.29 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.02 0.50 8.09 -2.39 -0.02 0.48 16 33 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.45 6.97 -2.39 -0.02 1.43 16 36 H 0.07 2.33 7.49 -2.39 -0.02 2.31 16 Total: -1.00 -60.26 283.32 -0.55 -60.80 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.34 Total: 18.07 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.21 Total: -20.57 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -7.12 Total: -104.69 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.26 -0.55 -60.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252806349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.957 kcal (2) G-P(sol) polarization free energy of solvation -60.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds