Wall clock time and date at job start Mon Mar 30 2020 02:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47388 * 239.99824 * 2 1 3 5 5 H 1.08000 * 120.00252 * 240.00260 * 4 2 1 6 6 C 1.37881 * 119.99665 * 59.99421 * 4 2 1 7 7 N 1.31510 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99588 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47268 * 60.00482 * 8 6 4 10 10 H 1.48504 * 109.46814 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47301 * 300.00052 * 8 6 4 12 12 N 1.46895 * 109.47229 * 119.99298 * 2 1 3 13 13 C 1.46894 * 111.00419 * 275.00078 * 12 2 1 14 14 H 1.08997 * 110.64479 * 31.85160 * 13 12 2 15 15 C 1.54604 * 110.72457 * 154.99885 * 13 12 2 16 16 C 1.53999 * 105.14048 * 140.31537 * 15 13 12 17 17 H 1.08997 * 109.91955 * 241.87353 * 16 15 13 18 18 C 1.53000 * 109.91415 * 120.57693 * 16 15 13 19 19 N 1.47899 * 107.05499 * 1.22634 * 16 15 13 20 20 C 1.46906 * 110.99831 * 214.15340 * 19 16 15 21 21 C 1.48530 * 105.82565 * 334.66857 * 19 16 15 22 22 H 1.09004 * 109.47265 * 59.99947 * 1 2 3 23 23 H 1.08992 * 109.47100 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47210 * 300.00391 * 1 2 3 25 25 H 0.97001 * 120.00513 * 179.97438 * 7 6 4 26 26 H 1.00905 * 111.00116 * 38.96237 * 12 2 1 27 27 H 1.09001 * 110.30354 * 21.40114 * 15 13 12 28 28 H 1.09000 * 110.39036 * 259.27839 * 15 13 12 29 29 H 1.08996 * 109.47010 * 300.95608 * 18 16 15 30 30 H 1.09002 * 109.46853 * 60.96011 * 18 16 15 31 31 H 1.09004 * 109.46430 * 180.95795 * 18 16 15 32 32 H 1.09001 * 109.46544 * 60.00187 * 20 19 16 33 33 H 1.09001 * 109.47272 * 179.97438 * 20 19 16 34 34 H 1.09000 * 109.47033 * 300.00242 * 20 19 16 35 35 H 1.09002 * 110.67228 * 157.64122 * 21 19 16 36 36 H 1.09004 * 110.67104 * 280.77525 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8300 -2.6035 8 14 2.3213 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8268 -0.4201 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6923 1.1995 13 6 2.0825 0.2228 2.3468 14 1 1.2982 0.9768 2.2804 15 6 1.9783 -0.5590 3.6765 16 6 2.9773 0.1277 4.6262 17 1 3.7508 -0.5794 4.9260 18 6 2.2437 0.6576 5.8599 19 7 3.5837 1.2510 3.8794 20 6 4.9856 1.4484 4.2719 21 6 3.4794 0.8860 2.4434 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7093 1.1616 -3.4845 26 1 1.4496 -1.4978 1.4101 27 1 2.2563 -1.6020 3.5248 28 1 0.9672 -0.4922 4.0782 29 1 1.4761 1.3665 5.5495 30 1 1.7781 -0.1730 6.3904 31 1 2.9544 1.1568 6.5186 32 1 5.5528 0.5418 4.0611 33 1 5.4074 2.2800 3.7074 34 1 5.0367 1.6693 5.3380 35 1 3.5269 1.7759 1.8157 36 1 4.2612 0.1779 2.1686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252806350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:20 Heat of formation + Delta-G solvation = 0.248041 kcal Electronic energy + Delta-G solvation = -14676.746263 eV Core-core repulsion = 12388.444094 eV Total energy + Delta-G solvation = -2288.302170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00643 -35.58077 -32.67198 -31.62740 -30.08776 -27.02797 -25.78916 -25.09463 -23.95694 -20.72644 -19.85705 -19.67691 -16.33441 -15.68737 -15.13654 -14.56317 -14.38656 -13.85900 -13.55615 -13.13709 -12.74434 -12.38127 -12.25815 -12.03921 -11.60906 -11.29683 -11.12058 -10.95820 -10.87971 -10.78988 -10.60697 -10.36278 -10.25802 -10.07303 -9.72120 -8.95490 -8.33439 -8.21347 -7.24159 -5.95712 -3.99088 3.35845 3.39753 3.43029 4.18783 4.46908 4.88904 4.98777 5.22723 5.32013 5.35787 5.49555 5.59030 5.60574 5.75446 5.85177 5.91507 5.96071 6.10295 6.14791 6.27373 6.37915 6.51614 6.55842 6.72493 6.86387 7.10484 7.14315 7.29484 7.45181 7.77175 7.91986 8.31536 8.56507 8.65342 9.07796 9.66097 11.11316 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049646 B = 0.006951 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.859982 B = 4027.114349 C = 4258.751144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.678 5.678 13 C 0.086 3.914 14 H 0.051 0.949 15 C -0.131 4.131 16 C 0.064 3.936 17 H 0.048 0.952 18 C -0.133 4.133 19 N -0.523 5.523 20 C 0.019 3.981 21 C 0.050 3.950 22 H 0.088 0.912 23 H 0.027 0.973 24 H 0.005 0.995 25 H 0.260 0.740 26 H 0.327 0.673 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -0.607 12.856 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.308 5.308 13 C -0.025 4.025 14 H 0.069 0.931 15 C -0.169 4.169 16 C -0.045 4.045 17 H 0.066 0.934 18 C -0.191 4.191 19 N -0.248 5.248 20 C -0.130 4.130 21 C -0.078 4.078 22 H 0.107 0.893 23 H 0.046 0.954 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.380 0.086 12.652 13.096 hybrid contribution -0.186 -1.028 -0.845 1.344 sum 3.194 -0.942 11.806 12.267 Atomic orbital electron populations 1.22432 1.00756 0.99119 1.00496 1.19204 0.89550 0.94413 0.86447 0.94786 1.21120 1.30235 1.12418 0.89666 0.92085 1.24949 0.95357 0.95209 0.99005 1.69873 1.37287 1.23159 1.23412 0.86578 0.79151 0.79599 0.82125 1.20406 1.21465 1.20342 1.60825 1.58024 1.08759 1.03224 1.22283 0.95798 0.94666 0.89795 0.93092 1.22700 0.98989 0.99706 0.95547 1.22308 0.96193 0.91470 0.94510 0.93389 1.21748 1.00248 1.00721 0.96350 1.64656 1.15786 1.39491 1.04841 1.22464 0.89072 1.00508 1.00919 1.23218 0.97766 0.99449 0.87379 0.89290 0.95405 0.97617 0.93028 0.85568 0.90958 0.91469 0.91989 0.92793 0.93153 0.95613 0.91452 0.91944 0.90411 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.92 37.16 0.33 -3.77 16 2 C 0.21 5.35 2.44 -68.87 -0.17 5.18 16 3 H 0.03 0.95 7.86 -51.92 -0.41 0.54 16 4 C -0.50 -13.80 8.84 -34.44 -0.30 -14.10 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.90 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.68 -14.42 6.08 -99.01 -0.60 -15.03 16 13 C 0.09 1.59 3.14 -65.85 -0.21 1.38 16 14 H 0.05 1.02 7.23 -51.93 -0.38 0.65 16 15 C -0.13 -1.96 6.06 -25.37 -0.15 -2.11 16 16 C 0.06 0.88 3.09 -66.64 -0.21 0.67 16 17 H 0.05 0.64 7.73 -51.93 -0.40 0.23 16 18 C -0.13 -1.55 9.32 37.16 0.35 -1.20 16 19 N -0.52 -7.96 5.18 -230.78 -1.20 -9.16 16 20 C 0.02 0.25 9.40 60.07 0.56 0.81 16 21 C 0.05 0.89 6.24 -1.90 -0.01 0.88 16 22 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.00 0.11 7.51 -51.93 -0.39 -0.28 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.33 6.59 8.07 -39.29 -0.32 6.28 16 27 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 28 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.32 8.00 -51.93 -0.42 -0.09 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.05 1.01 7.96 -51.93 -0.41 0.59 16 LS Contribution 285.35 15.07 4.30 4.30 Total: -1.00 -28.35 285.35 -8.15 -36.50 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.35 Total: 2.85 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.10 Total: -10.82 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -1.17 Total: -49.45 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.35 -8.15 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252806350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.747 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds