Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47288 * 2 1 4 4 C 1.50696 * 109.47057 * 239.99783 * 2 1 3 5 5 H 1.08004 * 120.00408 * 240.00196 * 4 2 1 6 6 C 1.37878 * 120.00083 * 60.00737 * 4 2 1 7 7 N 1.31513 * 119.99935 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00063 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47034 * 89.99722 * 8 6 4 10 10 H 1.48503 * 109.46916 * 209.99728 * 8 6 4 11 11 H 1.48499 * 109.46996 * 329.99593 * 8 6 4 12 12 N 1.46900 * 109.46834 * 120.00085 * 2 1 3 13 13 C 1.46903 * 110.99993 * 45.41567 * 12 2 1 14 14 C 1.46896 * 111.00074 * 281.46394 * 12 2 1 15 15 H 1.09003 * 109.46926 * 315.89189 * 14 12 2 16 16 C 1.52997 * 109.47527 * 195.89219 * 14 12 2 17 17 N 1.46906 * 109.46939 * 62.57979 * 16 14 12 18 18 C 1.52999 * 109.47534 * 75.88708 * 14 12 2 19 19 C 1.52992 * 117.50347 * 242.84883 * 18 14 12 20 20 C 1.52997 * 60.00359 * 252.51136 * 19 18 14 21 21 H 1.08997 * 109.47291 * 300.00362 * 1 2 3 22 22 H 1.09006 * 109.46807 * 60.00300 * 1 2 3 23 23 H 1.09000 * 109.47728 * 179.97438 * 1 2 3 24 24 H 0.96998 * 120.00262 * 180.02562 * 7 6 4 25 25 H 1.08991 * 109.47147 * 64.13267 * 13 12 2 26 26 H 1.09000 * 109.47146 * 304.13168 * 13 12 2 27 27 H 1.09005 * 109.47308 * 184.13756 * 13 12 2 28 28 H 1.08997 * 109.47500 * 182.58117 * 16 14 12 29 29 H 1.09000 * 109.47352 * 302.58421 * 16 14 12 30 30 H 1.00903 * 110.99885 * 184.37899 * 17 16 14 31 31 H 1.00898 * 110.99754 * 308.33096 * 17 16 14 32 32 H 1.09000 * 115.54658 * 28.55972 * 18 14 12 33 33 H 1.09007 * 117.49783 * 0.02562 * 19 18 14 34 34 H 1.09001 * 117.50078 * 145.01973 * 19 18 14 35 35 H 1.09001 * 117.49523 * 252.51132 * 20 19 18 36 36 H 1.08998 * 117.51837 * 107.47846 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1615 -4.4123 10 1 2.4875 -0.1402 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6925 1.1994 13 6 1.2874 -1.9470 1.4188 14 6 1.9381 0.1778 2.3800 15 1 2.2997 1.1735 2.1230 16 6 2.7995 -0.4035 3.5028 17 7 4.2051 -0.4329 3.0764 18 6 0.4841 0.2684 2.8475 19 6 -0.1866 1.6429 2.8075 20 6 0.2063 1.0224 4.1496 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7084 1.1609 -3.4844 25 1 1.4814 -2.6302 0.5920 26 1 0.2189 -1.7390 1.4752 27 1 1.6185 -2.4027 2.3520 28 1 2.7030 0.2173 4.3935 29 1 2.4671 -1.4168 3.7284 30 1 4.7847 -0.8781 3.7721 31 1 4.3017 -0.8872 2.1807 32 1 -0.1355 -0.6009 2.6274 33 1 0.4078 2.4827 2.4476 34 1 -1.2478 1.6781 2.5607 35 1 -0.5963 0.6493 4.7858 36 1 1.0595 1.4536 4.6733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253168503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 39.746323 kcal Electronic energy + Delta-G solvation = -15226.790952 eV Core-core repulsion = 12940.201556 eV Total energy + Delta-G solvation = -2286.589396 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01653 -35.43462 -33.96282 -32.26596 -28.87920 -27.08332 -25.35505 -24.66292 -22.55591 -21.71733 -19.82885 -18.62948 -16.17293 -16.03813 -15.12679 -14.97589 -14.40822 -14.07332 -13.56845 -13.18732 -12.76666 -12.23954 -12.09852 -11.48350 -11.22624 -11.08468 -11.01046 -10.74452 -10.61177 -10.52601 -10.44601 -10.05874 -9.93894 -9.74267 -9.38786 -8.67915 -8.30424 -8.18855 -7.10602 -5.93713 -3.97053 3.33915 3.40606 3.44737 4.13931 4.45943 4.88827 5.02322 5.23623 5.34877 5.37766 5.43959 5.70253 5.73847 5.88503 5.98875 6.08628 6.19865 6.21051 6.33533 6.41842 6.43440 6.68138 6.77710 6.93965 7.03251 7.24042 7.50920 7.63197 7.80381 7.92097 7.98484 8.24078 8.45796 8.66740 9.08824 9.67451 11.12799 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036035 B = 0.009778 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.831819 B = 2862.934468 C = 3303.216585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.215 3.785 3 H 0.035 0.965 4 C -0.494 4.494 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.284 1.284 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.523 5.523 13 C 0.027 3.973 14 C 0.112 3.888 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.848 5.848 18 C -0.171 4.171 19 C -0.170 4.170 20 C -0.188 4.188 21 H 0.029 0.971 22 H 0.082 0.918 23 H 0.027 0.973 24 H 0.258 0.742 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.326 0.674 31 H 0.358 0.642 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -1.936 10.755 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.109 3.891 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.078 0.922 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.245 5.245 13 C -0.122 4.122 14 C 0.002 3.998 15 H 0.099 0.901 16 C -0.053 4.053 17 N -0.378 5.378 18 C -0.191 4.191 19 C -0.207 4.207 20 C -0.226 4.226 21 H 0.048 0.952 22 H 0.101 0.899 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.137 0.863 31 H 0.173 0.827 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.087 -1.146 10.506 10.569 hybrid contribution -0.866 -1.270 -0.773 1.720 sum -0.952 -2.415 9.734 10.074 Atomic orbital electron populations 1.22643 1.00659 0.99296 1.01589 1.19252 0.90032 0.94043 0.85745 0.94735 1.21124 1.30172 1.12266 0.89733 0.92219 1.24919 0.95406 0.95181 0.98898 1.69894 1.37281 1.23127 1.23167 0.86562 0.79188 0.79247 0.82757 1.21009 1.21398 1.19921 1.62500 1.55022 1.04294 1.02720 1.22356 0.96441 0.93509 0.99865 1.21366 0.89579 0.97926 0.90903 0.90094 1.21729 0.88602 0.98157 0.96814 1.58692 1.07458 1.63390 1.08296 1.23246 0.99637 0.96162 1.00046 1.22909 1.00837 0.96941 0.99999 1.22981 1.02963 1.05629 0.91042 0.95182 0.89923 0.95432 0.93182 0.91557 0.95271 0.94192 0.92013 0.96171 0.86295 0.82694 0.87440 0.88882 0.89383 0.89703 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.36 7.70 37.16 0.29 -4.07 16 2 C 0.22 5.34 2.28 -68.87 -0.16 5.19 16 3 H 0.03 0.97 7.67 -51.93 -0.40 0.57 16 4 C -0.49 -13.53 8.17 -34.44 -0.28 -13.81 16 5 H 0.06 1.65 7.66 -52.48 -0.40 1.24 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.52 -10.82 3.88 -228.30 -0.89 -11.70 16 13 C 0.03 0.51 7.88 60.07 0.47 0.98 16 14 C 0.11 2.02 2.20 -67.72 -0.15 1.87 16 15 H 0.08 1.63 7.43 -51.93 -0.39 1.25 16 16 C 0.08 1.21 6.08 -3.82 -0.02 1.18 16 17 N -0.85 -13.09 9.65 -10.37 -0.10 -13.19 16 18 C -0.17 -2.78 2.99 -90.62 -0.27 -3.05 16 19 C -0.17 -2.64 8.55 -26.74 -0.23 -2.87 16 20 C -0.19 -2.56 9.67 -26.73 -0.26 -2.81 16 21 H 0.03 0.63 3.89 -51.93 -0.20 0.43 16 22 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 23 H 0.03 0.64 6.25 -51.93 -0.32 0.31 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 26 H 0.03 0.55 4.06 -51.93 -0.21 0.34 16 27 H 0.04 0.66 6.40 -51.93 -0.33 0.33 16 28 H 0.06 0.88 6.85 -51.93 -0.36 0.52 16 29 H 0.02 0.31 6.54 -51.93 -0.34 -0.03 16 30 H 0.33 4.13 9.08 -39.29 -0.36 3.77 16 31 H 0.36 6.10 8.29 -39.29 -0.33 5.78 16 32 H 0.11 1.84 5.35 -51.93 -0.28 1.56 16 33 H 0.09 1.50 8.03 -51.92 -0.42 1.08 16 34 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.17 7.22 -51.93 -0.37 0.79 16 LS Contribution 269.46 15.07 4.06 4.06 Total: -1.00 -27.87 269.46 -7.41 -35.28 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.39 Total: 9.99 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -0.70 Total: -15.92 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.36 Total: -49.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.87 -7.41 -35.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253168503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.029 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds