Wall clock time and date at job start Mon Mar 30 2020 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47288 * 2 1 4 4 C 1.50696 * 109.47057 * 239.99783 * 2 1 3 5 5 H 1.08004 * 120.00408 * 240.00196 * 4 2 1 6 6 C 1.37878 * 120.00083 * 60.00737 * 4 2 1 7 7 N 1.31513 * 119.99935 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00063 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47034 * 89.99722 * 8 6 4 10 10 H 1.48503 * 109.46916 * 209.99728 * 8 6 4 11 11 H 1.48499 * 109.46996 * 329.99593 * 8 6 4 12 12 N 1.46900 * 109.46834 * 120.00085 * 2 1 3 13 13 C 1.46903 * 110.99993 * 45.41567 * 12 2 1 14 14 C 1.46896 * 111.00074 * 281.46394 * 12 2 1 15 15 H 1.09003 * 109.46926 * 315.89189 * 14 12 2 16 16 C 1.52997 * 109.47527 * 195.89219 * 14 12 2 17 17 N 1.46906 * 109.46939 * 62.57979 * 16 14 12 18 18 C 1.52999 * 109.47534 * 75.88708 * 14 12 2 19 19 C 1.52992 * 117.50347 * 242.84883 * 18 14 12 20 20 C 1.52997 * 60.00359 * 252.51136 * 19 18 14 21 21 H 1.08997 * 109.47291 * 300.00362 * 1 2 3 22 22 H 1.09006 * 109.46807 * 60.00300 * 1 2 3 23 23 H 1.09000 * 109.47728 * 179.97438 * 1 2 3 24 24 H 0.96998 * 120.00262 * 180.02562 * 7 6 4 25 25 H 1.08991 * 109.47147 * 64.13267 * 13 12 2 26 26 H 1.09000 * 109.47146 * 304.13168 * 13 12 2 27 27 H 1.09005 * 109.47308 * 184.13756 * 13 12 2 28 28 H 1.08997 * 109.47500 * 182.58117 * 16 14 12 29 29 H 1.09000 * 109.47352 * 302.58421 * 16 14 12 30 30 H 1.00903 * 110.99885 * 184.37899 * 17 16 14 31 31 H 1.00898 * 110.99754 * 308.33096 * 17 16 14 32 32 H 1.09000 * 115.54658 * 28.55972 * 18 14 12 33 33 H 1.09007 * 117.49783 * 0.02562 * 19 18 14 34 34 H 1.09001 * 117.50078 * 145.01973 * 19 18 14 35 35 H 1.09001 * 117.49523 * 252.51132 * 20 19 18 36 36 H 1.08998 * 117.51837 * 107.47846 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1615 -4.4123 10 1 2.4875 -0.1402 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6925 1.1994 13 6 1.2874 -1.9470 1.4188 14 6 1.9381 0.1778 2.3800 15 1 2.2997 1.1735 2.1230 16 6 2.7995 -0.4035 3.5028 17 7 4.2051 -0.4329 3.0764 18 6 0.4841 0.2684 2.8475 19 6 -0.1866 1.6429 2.8075 20 6 0.2063 1.0224 4.1496 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7084 1.1609 -3.4844 25 1 1.4814 -2.6302 0.5920 26 1 0.2189 -1.7390 1.4752 27 1 1.6185 -2.4027 2.3520 28 1 2.7030 0.2173 4.3935 29 1 2.4671 -1.4168 3.7284 30 1 4.7847 -0.8781 3.7721 31 1 4.3017 -0.8872 2.1807 32 1 -0.1355 -0.6009 2.6274 33 1 0.4078 2.4827 2.4476 34 1 -1.2478 1.6781 2.5607 35 1 -0.5963 0.6493 4.7858 36 1 1.0595 1.4536 4.6733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253168503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:55 Heat of formation + Delta-G solvation = 20.180312 kcal Electronic energy + Delta-G solvation = -15227.639398 eV Core-core repulsion = 12940.201556 eV Total energy + Delta-G solvation = -2287.437842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49037 -36.95581 -35.41589 -34.13188 -30.68608 -28.56962 -27.34804 -26.32855 -23.87736 -22.94281 -21.58528 -20.10292 -18.19968 -17.50713 -16.75380 -16.40284 -16.03257 -15.58125 -15.01067 -14.69992 -14.38089 -14.07894 -13.44782 -13.13463 -12.97110 -12.69053 -12.55282 -12.38259 -12.31902 -12.19985 -12.14392 -11.87330 -11.68166 -11.14752 -11.03654 -10.47902 -10.37023 -9.41256 -8.75219 -8.05807 -6.16671 1.41815 1.43060 1.53549 2.44620 2.92294 3.22267 3.45168 3.64428 4.03152 4.14767 4.17694 4.33700 4.41079 4.61290 4.65269 4.77063 4.85674 4.88646 4.92205 5.03116 5.04727 5.10037 5.19711 5.27896 5.28279 5.44838 5.58356 5.76172 5.89636 6.29932 6.41705 6.58412 6.79460 6.82852 6.97670 7.52351 8.99133 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036035 B = 0.009778 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.831819 B = 2862.934468 C = 3303.216585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.224 3.776 3 H -0.006 1.006 4 C -0.509 4.509 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.530 5.530 13 C 0.032 3.968 14 C 0.114 3.886 15 H 0.051 0.949 16 C 0.086 3.914 17 N -0.857 5.857 18 C -0.188 4.188 19 C -0.186 4.186 20 C -0.152 4.152 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.028 0.972 24 H 0.258 0.742 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.344 0.656 31 H 0.348 0.652 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 -2.894 12.306 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.117 3.883 3 H 0.012 0.988 4 C -0.548 4.548 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.194 1.194 12 N -0.252 5.252 13 C -0.116 4.116 14 C 0.005 3.995 15 H 0.069 0.931 16 C -0.045 4.045 17 N -0.388 5.388 18 C -0.208 4.208 19 C -0.223 4.223 20 C -0.190 4.190 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.064 -2.113 12.091 12.275 hybrid contribution -0.849 -0.937 -1.195 1.740 sum -0.913 -3.050 10.896 11.352 Atomic orbital electron populations 1.22458 1.00019 0.99075 1.01118 1.18926 0.90325 0.91926 0.87117 0.98846 1.21423 1.30098 1.12172 0.91093 0.92827 1.25686 0.95637 0.95886 1.01791 1.70035 1.38186 1.24312 1.23691 0.85580 0.78797 0.78192 0.79169 1.20319 1.21185 1.19424 1.62351 1.55240 1.05037 1.02546 1.22322 0.96359 0.92311 1.00565 1.21327 0.91435 0.96114 0.90634 0.93059 1.21681 0.87985 0.98791 0.96038 1.58674 1.07950 1.63763 1.08397 1.23090 0.98268 0.96316 1.03105 1.22936 1.00830 0.96138 1.02431 1.23047 1.03547 1.02563 0.89800 0.92812 0.93164 0.95324 0.93247 0.93305 0.95199 0.91254 0.90145 0.95137 0.84341 0.83843 0.87853 0.90255 0.88933 0.87282 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -8.13 7.70 71.98 0.55 -7.57 16 2 C 0.22 11.42 2.28 44.17 0.10 11.52 16 3 H -0.01 -0.37 7.67 -2.39 -0.02 -0.39 16 4 C -0.51 -28.41 8.17 25.60 0.21 -28.20 16 5 H 0.05 2.99 7.66 -2.91 -0.02 2.97 16 6 C 0.01 0.44 5.30 84.66 0.45 0.89 16 7 N -0.92 -54.18 11.32 21.45 0.24 -53.94 16 8 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.53 -21.86 3.88 -876.21 -3.40 -25.26 16 13 C 0.03 1.19 7.88 127.69 1.01 2.20 16 14 C 0.11 4.02 2.20 44.91 0.10 4.12 16 15 H 0.05 2.10 7.43 -2.39 -0.02 2.09 16 16 C 0.09 2.45 6.08 86.30 0.52 2.97 16 17 N -0.86 -25.03 9.65 -186.71 -1.80 -26.83 16 18 C -0.19 -5.79 2.99 -10.80 -0.03 -5.82 16 19 C -0.19 -5.57 8.55 30.59 0.26 -5.30 16 20 C -0.15 -3.63 9.67 30.59 0.30 -3.33 16 21 H 0.05 2.29 3.89 -2.39 -0.01 2.28 16 22 H 0.05 2.76 6.07 -2.38 -0.01 2.75 16 23 H 0.03 1.33 6.25 -2.39 -0.01 1.32 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 26 H 0.03 1.09 4.06 -2.39 -0.01 1.08 16 27 H 0.07 2.13 6.40 -2.38 -0.02 2.11 16 28 H 0.08 2.01 6.85 -2.39 -0.02 1.99 16 29 H 0.03 0.82 6.54 -2.39 -0.02 0.80 16 30 H 0.34 7.89 9.08 -89.69 -0.81 7.08 16 31 H 0.35 11.54 8.29 -89.70 -0.74 10.80 16 32 H 0.10 3.32 5.35 -2.39 -0.01 3.31 16 33 H 0.08 2.58 8.03 -2.38 -0.02 2.56 16 34 H 0.09 2.66 8.12 -2.39 -0.02 2.64 16 35 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 2.24 7.22 -2.39 -0.02 2.22 16 Total: -1.00 -60.48 269.46 0.07 -60.41 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.47 Total: 27.48 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.47 Total: -28.52 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -4.96 Total: -106.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.48 0.07 -60.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253168503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.592 kcal (2) G-P(sol) polarization free energy of solvation -60.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds