Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50244 * 2 1 4 4 C 1.53033 * 109.50621 * 120.07872 * 2 1 3 5 5 N 1.46852 * 109.52498 * 60.79986 * 4 2 1 6 6 C 1.46898 * 111.00061 * 185.84155 * 5 4 2 7 7 C 1.46843 * 111.19485 * 61.74169 * 5 4 2 8 8 C 1.53034 * 109.52558 * 298.25934 * 7 5 4 9 9 C 1.53113 * 109.27636 * 59.18264 * 8 7 5 10 10 H 1.08998 * 109.52492 * 62.25194 * 9 8 7 11 11 N 1.46908 * 109.52198 * 182.44104 * 9 8 7 12 12 C 1.46897 * 110.99747 * 274.68219 * 11 9 8 13 13 C 1.50701 * 109.47047 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00050 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99973 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99786 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99812 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47251 * 59.99830 * 17 15 13 19 19 H 1.48502 * 109.46907 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47263 * 300.00115 * 17 15 13 21 21 H 1.08996 * 109.46892 * 299.99681 * 1 2 3 22 22 H 1.09001 * 109.47140 * 60.00215 * 1 2 3 23 23 H 1.09001 * 109.46459 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46686 * 180.81902 * 4 2 1 25 25 H 1.09001 * 109.46063 * 300.78797 * 4 2 1 26 26 H 1.09002 * 109.47186 * 60.00170 * 6 5 4 27 27 H 1.09004 * 109.46951 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.47387 * 300.00231 * 6 5 4 29 29 H 1.09004 * 109.46121 * 58.28000 * 7 5 4 30 30 H 1.09000 * 109.45779 * 178.25156 * 7 5 4 31 31 H 1.09000 * 109.50014 * 179.12107 * 8 7 5 32 32 H 1.09001 * 109.50182 * 299.19743 * 8 7 5 33 33 H 1.00900 * 110.99657 * 38.63113 * 11 9 8 34 34 H 1.09000 * 109.47357 * 299.99706 * 12 11 9 35 35 H 1.08998 * 109.47786 * 59.99936 * 12 11 9 36 36 H 0.97002 * 119.99591 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 1.2482 5 7 1.5684 -2.1133 1.2382 6 6 1.9232 -2.7990 2.4879 7 6 2.0862 -2.8416 0.0729 8 6 1.5766 -2.1819 -1.2104 9 6 2.0421 -0.7237 -1.2484 10 1 3.1313 -0.6894 -1.2684 11 7 1.5070 -0.0687 -2.4496 12 6 2.3779 -0.3031 -3.6091 13 6 1.7984 0.3828 -4.8194 14 1 0.8752 0.9370 -4.7357 15 6 2.4468 0.3029 -6.0336 16 7 3.5707 -0.3724 -6.1357 17 14 1.7281 1.1525 -7.5339 18 1 1.6279 2.6115 -7.2761 19 1 2.6086 0.9157 -8.7061 20 1 0.3760 0.6052 -7.8125 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 3.1309 -0.7099 1.2550 25 1 1.6664 -0.2186 2.1390 26 1 1.4648 -2.2802 3.3298 27 1 1.5610 -3.8266 2.4540 28 1 3.0066 -2.7990 2.6075 29 1 3.1760 -2.8187 0.0852 30 1 1.7444 -3.8760 0.1099 31 1 1.9738 -2.7134 -2.0752 32 1 0.4874 -2.2175 -1.2301 33 1 0.5640 -0.3740 -2.6382 34 1 3.3705 0.0984 -3.4051 35 1 2.4510 -1.3740 -3.7983 36 1 4.0270 -0.4283 -6.9898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253305611.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -7.512647 kcal Electronic energy + Delta-G solvation = -14709.925004 eV Core-core repulsion = 12421.286306 eV Total energy + Delta-G solvation = -2288.638698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.30454 -35.48877 -33.08451 -31.80544 -30.54746 -26.96010 -26.58626 -24.76888 -22.60350 -22.09239 -21.02727 -18.39897 -16.51923 -15.71113 -14.91011 -14.84042 -14.65524 -14.06284 -13.84479 -13.51937 -12.87555 -12.38151 -12.24094 -12.20642 -11.91228 -11.44212 -11.26949 -11.16291 -11.05349 -10.74228 -10.70197 -10.35824 -10.12488 -9.98648 -9.67947 -9.11106 -8.45214 -8.21835 -7.18434 -6.00570 -4.02265 3.35413 3.38991 3.42397 4.04101 4.45251 5.00639 5.04847 5.15620 5.28890 5.35264 5.42922 5.48492 5.57484 5.63596 5.79050 5.84964 5.86442 5.95082 6.01428 6.10140 6.29540 6.33783 6.50312 6.63624 6.67978 6.87868 7.16288 7.20330 7.32096 7.48500 7.82400 8.17357 8.46450 8.67663 9.07370 9.62552 11.10487 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061230 B = 0.006415 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.181589 B = 4363.780120 C = 4595.717081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 H 0.075 0.925 4 C 0.060 3.940 5 N -0.540 5.540 6 C 0.026 3.974 7 C 0.061 3.939 8 C -0.146 4.146 9 C 0.092 3.908 10 H 0.064 0.936 11 N -0.682 5.682 12 C 0.194 3.806 13 C -0.514 4.514 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.039 0.961 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.330 0.670 34 H 0.025 0.975 35 H -0.014 1.014 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -3.761 14.212 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.093 0.907 4 C -0.068 4.068 5 N -0.264 5.264 6 C -0.123 4.123 7 C -0.068 4.068 8 C -0.186 4.186 9 C -0.020 4.020 10 H 0.083 0.917 11 N -0.311 5.311 12 C 0.068 3.932 13 C -0.552 4.552 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.043 0.957 35 H 0.004 0.996 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.419 -3.176 14.163 14.912 hybrid contribution 0.543 -0.613 -0.999 1.291 sum -2.876 -3.788 13.164 13.997 Atomic orbital electron populations 1.21669 0.94795 1.01900 1.00736 1.21159 0.96885 0.98833 0.92729 0.90672 1.22172 0.97011 0.88606 0.99015 1.61920 1.59963 1.02418 1.02128 1.22331 0.98303 0.99316 0.92325 1.22043 0.96917 0.97241 0.90563 1.22379 1.01846 0.98202 0.96161 1.21539 0.98547 0.90194 0.91701 0.91729 1.60743 1.05980 1.60133 1.04257 1.19560 0.92655 0.94465 0.86551 1.21174 1.08808 1.32174 0.93060 0.92060 1.24987 0.94995 0.95568 0.99019 1.69957 1.16769 1.41689 1.25462 0.86550 0.78822 0.80081 0.81870 1.20173 1.21386 1.20281 0.94142 0.92222 0.92086 0.95264 0.91131 0.91646 0.91698 0.96045 0.95181 0.91349 0.91490 0.91022 0.85311 0.95700 0.99620 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.44 37.16 0.31 -1.63 16 2 C -0.08 -1.18 2.94 -90.54 -0.27 -1.44 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.06 0.80 4.90 -3.83 -0.02 0.78 16 5 N -0.54 -7.05 4.19 -242.96 -1.02 -8.07 16 6 C 0.03 0.27 9.59 60.06 0.58 0.84 16 7 C 0.06 0.84 5.46 -3.84 -0.02 0.82 16 8 C -0.15 -2.38 4.99 -26.65 -0.13 -2.51 16 9 C 0.09 1.65 2.24 -67.59 -0.15 1.50 16 10 H 0.06 1.27 7.80 -51.93 -0.41 0.86 16 11 N -0.68 -14.70 5.69 -107.86 -0.61 -15.32 16 12 C 0.19 5.14 5.24 -4.98 -0.03 5.11 16 13 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.93 7.19 -51.93 -0.37 0.56 16 23 H 0.06 0.90 6.01 -51.93 -0.31 0.59 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.07 1.19 7.54 -51.93 -0.39 0.80 16 32 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 33 H 0.33 6.88 7.68 -39.29 -0.30 6.58 16 34 H 0.02 0.72 8.06 -51.93 -0.42 0.30 16 35 H -0.01 -0.39 7.51 -51.93 -0.39 -0.78 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 280.22 15.07 4.22 4.22 Total: -1.00 -29.56 280.22 -8.12 -37.67 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.28 Total: 1.05 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.14 Total: -10.05 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.90 Total: -49.78 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.56 -8.12 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253305611.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.160 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds